Wall clock time and date at job start Wed Apr 1 2020 04:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86800 * 120.00106 * 2 1 4 4 H 1.48501 * 109.47162 * 270.00412 * 3 2 1 5 5 H 1.48507 * 109.46930 * 29.99712 * 3 2 1 6 6 H 1.48502 * 109.47503 * 149.99822 * 3 2 1 7 7 C 1.38813 * 120.00567 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00500 * 187.57093 * 7 2 1 9 9 N 1.36937 * 119.99832 * 7.56689 * 7 2 1 10 10 C 1.44580 * 118.64714 * 212.67062 * 9 7 2 11 11 C 1.54863 * 109.60079 * 270.72742 * 10 9 7 12 12 C 1.47098 * 110.31934 * 288.73198 * 11 10 9 13 13 C 1.52565 * 114.32629 * 62.80198 * 12 11 10 14 14 H 1.09005 * 109.48679 * 34.95511 * 13 12 11 15 15 C 1.53005 * 109.48770 * 154.99751 * 13 12 11 16 16 C 1.53041 * 109.45908 * 300.45738 * 15 13 12 17 17 C 1.53193 * 109.31177 * 178.61408 * 16 15 13 18 18 N 1.46928 * 108.77620 * 54.63652 * 17 16 15 19 19 C 1.34771 * 120.63066 * 126.36259 * 18 17 16 20 20 O 1.21689 * 120.00019 * 176.20197 * 19 18 17 21 21 C 1.46722 * 120.00215 * 356.21245 * 19 18 17 22 22 C 1.36341 * 126.64245 * 186.59730 * 21 19 18 23 23 N 1.33695 * 107.45237 * 179.83817 * 22 21 19 24 24 C 1.30627 * 108.99113 * 0.43385 * 23 22 21 25 25 O 1.33664 * 109.15770 * 359.72822 * 24 23 22 26 26 C 1.46925 * 118.73649 * 306.39140 * 18 17 16 27 27 C 1.53037 * 109.45763 * 180.39034 * 15 13 12 28 28 C 1.50878 * 109.36035 * 274.98505 * 13 12 11 29 29 C 1.47609 * 118.64050 * 32.64768 * 9 7 2 30 30 H 0.96999 * 120.00624 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.44922 * 150.68132 * 10 9 7 32 32 H 1.09004 * 109.44469 * 30.76454 * 10 9 7 33 33 H 1.08994 * 109.32702 * 168.47316 * 11 10 9 34 34 H 1.09001 * 109.32752 * 48.99079 * 11 10 9 35 35 H 1.08998 * 108.50961 * 301.54844 * 12 11 10 36 36 H 1.08999 * 108.38503 * 183.96958 * 12 11 10 37 37 H 1.08993 * 109.45607 * 60.41643 * 15 13 12 38 38 H 1.09004 * 109.49881 * 298.56793 * 16 15 13 39 39 H 1.09007 * 109.49735 * 58.66370 * 16 15 13 40 40 H 1.08999 * 109.58699 * 294.84940 * 17 16 15 41 41 H 1.09002 * 109.70210 * 174.49100 * 17 16 15 42 42 H 1.08002 * 126.27522 * 0.02562 * 22 21 19 43 43 H 1.08000 * 125.42095 * 179.71052 * 24 23 22 44 44 H 1.08995 * 109.59095 * 293.81974 * 26 18 17 45 45 H 1.09000 * 109.70188 * 173.46441 * 26 18 17 46 46 H 1.09001 * 109.50157 * 301.33722 * 27 15 13 47 47 H 1.09006 * 109.49836 * 61.43356 * 27 15 13 48 48 H 1.08996 * 109.36588 * 212.07744 * 28 13 12 49 49 H 1.08999 * 109.36672 * 331.69973 * 28 13 12 50 50 H 1.08994 * 108.94717 * 258.55380 * 29 9 7 51 51 H 1.08997 * 108.94847 * 17.27387 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0832 -1.2062 0.1227 9 7 1.3346 -2.3828 -0.1572 10 6 1.8355 -3.5622 0.5125 11 6 2.8484 -4.2900 -0.4054 12 6 2.1505 -4.9255 -1.5335 13 6 1.4351 -3.9480 -2.4611 14 1 2.0119 -3.0258 -2.5320 15 6 1.2967 -4.5718 -3.8513 16 6 2.6862 -4.8927 -4.4068 17 6 2.5422 -5.5486 -5.7837 18 7 1.7365 -4.6711 -6.6436 19 6 2.1966 -4.2796 -7.8484 20 8 1.4921 -3.6098 -8.5804 21 6 3.5468 -4.6611 -8.2774 22 6 4.1927 -4.2401 -9.4020 23 7 5.3974 -4.8198 -9.4133 24 6 5.5135 -5.5795 -8.3570 25 8 4.3901 -5.5038 -7.6366 26 6 0.4200 -4.2280 -6.1649 27 6 0.5877 -3.5869 -4.7837 28 6 0.0653 -3.6438 -1.9066 29 6 0.1246 -2.3988 -1.0025 30 1 -0.4851 0.8400 -0.0004 31 1 1.0052 -4.2311 0.7391 32 1 2.3297 -3.2708 1.4393 33 1 3.3732 -5.0527 0.1699 34 1 3.5711 -3.5693 -0.7880 35 1 1.4160 -5.6259 -1.1358 36 1 2.8804 -5.4859 -2.1177 37 1 0.7131 -5.4896 -3.7809 38 1 3.2620 -3.9720 -4.5007 39 1 3.1995 -5.5760 -3.7302 40 1 2.0459 -6.5134 -5.6788 41 1 3.5275 -5.6909 -6.2277 42 1 3.8037 -3.5603 -10.1456 43 1 6.3792 -6.1744 -8.1059 44 1 -0.2494 -5.0849 -6.0911 45 1 0.0035 -3.4976 -6.8586 46 1 -0.3925 -3.3406 -4.3755 47 1 1.1833 -2.6784 -4.8741 48 1 -0.6252 -3.4601 -2.7298 49 1 -0.2868 -4.4959 -1.3252 50 1 -0.7559 -2.3851 -0.3603 51 1 0.1190 -1.5071 -1.6294 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075455868.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:04 Heat of formation + Delta-G solvation = -2.491862 kcal Electronic energy + Delta-G solvation = -32023.971118 eV Core-core repulsion = 27925.016283 eV Total energy + Delta-G solvation = -4098.954835 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.51429 -41.33860 -40.06350 -38.29048 -36.29748 -35.75214 -34.31263 -32.86643 -32.48623 -31.94370 -31.12556 -28.20811 -26.91300 -25.45847 -25.34982 -24.13640 -23.83441 -23.47320 -22.03069 -21.09850 -20.76319 -20.49899 -18.77577 -18.47971 -18.15962 -17.90499 -17.21089 -16.93185 -16.45849 -16.02329 -15.79128 -15.43320 -15.30290 -15.28066 -15.09563 -15.01578 -14.80909 -14.32135 -14.18368 -14.11860 -13.81533 -13.43716 -13.25033 -12.95723 -12.79252 -12.72615 -12.59655 -12.49324 -12.33661 -12.24585 -12.04338 -11.99747 -11.80775 -11.51861 -11.44023 -11.29003 -11.27239 -11.19817 -10.90063 -10.65164 -10.43192 -10.29399 -9.73363 -8.51060 -7.83328 -5.36768 -0.25323 1.29150 1.40892 1.42424 1.43578 1.51840 1.87699 2.01740 2.49683 3.21169 3.30560 3.45768 3.68469 3.74181 3.84233 3.86446 3.88997 4.08736 4.11552 4.21955 4.32808 4.41401 4.43788 4.50885 4.54331 4.59127 4.63838 4.68242 4.79556 4.85424 4.88375 4.90289 4.97076 5.04490 5.10629 5.12943 5.22603 5.28266 5.30580 5.33688 5.40346 5.45642 5.46979 5.60057 5.61008 5.67932 5.78516 5.86983 5.89062 6.10493 6.46095 6.48976 6.79611 7.23263 8.00854 8.40229 9.19986 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012773 B = 0.002818 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.522278 B = 9934.933564 C =10348.867649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.045 4.045 3 Si 0.958 3.042 4 H -0.289 1.289 5 H -0.294 1.294 6 H -0.269 1.269 7 C -0.260 4.260 8 H 0.058 0.942 9 N -0.602 5.602 10 C 0.151 3.849 11 C -0.132 4.132 12 C -0.100 4.100 13 C -0.059 4.059 14 H 0.038 0.962 15 C -0.072 4.072 16 C -0.124 4.124 17 C 0.092 3.908 18 N -0.596 5.596 19 C 0.599 3.401 20 O -0.560 6.560 21 C -0.124 4.124 22 C 0.049 3.951 23 N -0.527 5.527 24 C 0.220 3.780 25 O -0.181 6.181 26 C 0.117 3.883 27 C -0.128 4.128 28 C -0.128 4.128 29 C 0.193 3.807 30 H 0.247 0.753 31 H 0.038 0.962 32 H 0.028 0.972 33 H 0.073 0.927 34 H 0.035 0.965 35 H 0.059 0.941 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.044 0.956 39 H 0.102 0.898 40 H 0.097 0.903 41 H 0.115 0.885 42 H 0.197 0.803 43 H 0.307 0.693 44 H 0.096 0.904 45 H 0.078 0.922 46 H 0.083 0.917 47 H 0.039 0.961 48 H 0.070 0.930 49 H 0.057 0.943 50 H -0.013 1.013 51 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.162 -18.956 -14.024 24.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.241 4.241 3 Si 0.787 3.213 4 H -0.216 1.216 5 H -0.221 1.221 6 H -0.193 1.193 7 C -0.391 4.391 8 H 0.075 0.925 9 N -0.325 5.325 10 C 0.024 3.976 11 C -0.172 4.172 12 C -0.137 4.137 13 C -0.078 4.078 14 H 0.057 0.943 15 C -0.090 4.090 16 C -0.162 4.162 17 C -0.028 4.028 18 N -0.326 5.326 19 C 0.387 3.613 20 O -0.441 6.441 21 C -0.178 4.178 22 C -0.093 4.093 23 N -0.254 5.254 24 C -0.003 4.003 25 O -0.069 6.069 26 C -0.004 4.004 27 C -0.166 4.166 28 C -0.166 4.166 29 C 0.068 3.932 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.046 0.954 33 H 0.091 0.909 34 H 0.054 0.946 35 H 0.078 0.922 36 H 0.095 0.905 37 H 0.109 0.891 38 H 0.063 0.937 39 H 0.120 0.880 40 H 0.115 0.885 41 H 0.132 0.868 42 H 0.214 0.786 43 H 0.321 0.679 44 H 0.114 0.886 45 H 0.096 0.904 46 H 0.102 0.898 47 H 0.058 0.942 48 H 0.088 0.912 49 H 0.075 0.925 50 H 0.005 0.995 51 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 8.110 -18.469 -14.750 24.988 hybrid contribution -0.371 1.778 0.788 1.980 sum 7.738 -16.690 -13.961 23.095 Atomic orbital electron populations 1.70171 1.06455 1.25405 1.56059 1.25876 0.96100 1.01201 1.00906 0.85404 0.78273 0.80246 0.77360 1.21604 1.22062 1.19331 1.19410 0.90547 0.85415 1.43742 0.92472 1.43766 1.29648 1.05352 1.53735 1.20881 0.95174 0.88059 0.93437 1.21304 0.98576 0.99058 0.98230 1.20445 0.99655 0.97492 0.96065 1.20407 0.95610 0.97931 0.93872 0.94339 1.21150 0.96387 0.98558 0.92934 1.22022 0.97153 1.01141 0.95887 1.22539 0.97167 0.93041 0.90092 1.48171 1.19689 1.48438 1.16341 1.16778 0.83134 0.79444 0.81911 1.90859 1.56939 1.41543 1.54779 1.22850 0.94226 1.02842 0.97924 1.23756 0.89617 0.99282 0.96645 1.70518 1.19054 1.12359 1.23516 1.29787 0.90069 0.95686 0.84792 1.84633 1.24652 1.51680 1.45935 1.21729 0.83060 1.00556 0.95105 1.22014 1.01855 0.98289 0.94475 1.22067 0.97672 0.98062 0.98811 1.20696 0.86663 0.95002 0.90846 0.94379 0.94325 0.95377 0.90856 0.94588 0.92244 0.90478 0.89072 0.93715 0.87958 0.88475 0.86769 0.78612 0.67850 0.88584 0.90366 0.89832 0.94206 0.91206 0.92458 0.99540 0.95211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.01 10.96 21.65 0.24 -55.77 16 2 C -0.05 -2.57 5.04 84.86 0.43 -2.14 16 3 Si 0.96 45.88 29.56 68.60 2.03 47.90 16 4 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 5 H -0.29 -14.14 7.11 99.48 0.71 -13.44 16 6 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 7 C -0.26 -14.36 9.39 84.03 0.79 -13.57 16 8 H 0.06 3.13 7.84 -2.91 -0.02 3.10 16 9 N -0.60 -29.74 2.25 -698.29 -1.57 -31.31 16 10 C 0.15 6.12 5.65 87.37 0.49 6.61 16 11 C -0.13 -4.18 5.74 29.40 0.17 -4.01 16 12 C -0.10 -2.62 4.57 28.61 0.13 -2.49 16 13 C -0.06 -1.78 1.40 -11.63 -0.02 -1.80 16 14 H 0.04 1.51 7.48 -2.38 -0.02 1.49 16 15 C -0.07 -1.58 1.71 -10.77 -0.02 -1.60 16 16 C -0.12 -2.32 5.11 30.67 0.16 -2.17 16 17 C 0.09 1.45 6.32 86.36 0.55 2.00 16 18 N -0.60 -12.84 2.97 -823.55 -2.45 -15.29 16 19 C 0.60 15.21 7.67 86.46 0.66 15.87 16 20 O -0.56 -17.82 16.33 -4.31 -0.07 -17.90 16 21 C -0.12 -2.57 6.88 24.05 0.17 -2.41 16 22 C 0.05 1.00 11.67 83.97 0.98 1.98 16 23 N -0.53 -9.35 11.26 -315.08 -3.55 -12.89 16 24 C 0.22 2.22 13.21 130.42 1.72 3.94 16 25 O -0.18 -2.62 7.27 -7.13 -0.05 -2.67 16 26 C 0.12 2.53 6.42 86.37 0.55 3.09 16 27 C -0.13 -3.16 5.13 30.67 0.16 -3.00 16 28 C -0.13 -4.39 5.11 30.24 0.15 -4.23 16 29 C 0.19 9.25 4.63 86.50 0.40 9.65 16 30 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 31 H 0.04 1.48 8.07 -2.39 -0.02 1.46 16 32 H 0.03 1.19 7.99 -2.39 -0.02 1.17 16 33 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.06 1.46 7.36 -2.39 -0.02 1.44 16 36 H 0.08 1.58 5.42 -2.39 -0.01 1.57 16 37 H 0.09 1.65 8.14 -2.39 -0.02 1.64 16 38 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.10 1.54 5.92 -2.38 -0.01 1.52 16 40 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.12 1.62 3.79 -51.58 -0.20 1.43 16 42 H 0.20 3.71 8.06 -2.91 -0.02 3.69 16 43 H 0.31 -0.77 8.06 -2.91 -0.02 -0.80 16 44 H 0.10 1.62 8.14 -2.39 -0.02 1.61 16 45 H 0.08 1.96 7.03 -2.39 -0.02 1.94 16 46 H 0.08 2.09 5.97 -2.39 -0.01 2.08 16 47 H 0.04 1.21 8.14 -2.38 -0.02 1.19 16 48 H 0.07 2.19 5.50 -2.39 -0.01 2.18 16 49 H 0.06 1.82 7.32 -2.39 -0.02 1.80 16 50 H -0.01 -0.73 7.97 -2.39 -0.02 -0.75 16 51 H 0.03 1.63 6.56 -2.39 -0.02 1.61 16 Total: -1.00 -74.68 383.20 2.80 -71.88 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: 0.75 Total: 10.31 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: 7.48 Total: 5.72 kcal Atomic # 7 Polarization: -107.93 SS G_CDS: -7.33 Total: -115.26 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -0.12 Total: -20.56 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.90 kcal Total: -74.68 2.80 -71.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075455868.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.389 kcal (2) G-P(sol) polarization free energy of solvation -74.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds