Wall clock time and date at job start Wed Apr 1 2020 04:57:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31609 * 1
3 3 Si 1.86800 * 120.00106 * 2 1
4 4 H 1.48501 * 109.47162 * 270.00412 * 3 2 1
5 5 H 1.48507 * 109.46930 * 29.99712 * 3 2 1
6 6 H 1.48502 * 109.47503 * 149.99822 * 3 2 1
7 7 C 1.38813 * 120.00567 * 180.02562 * 2 1 3
8 8 H 1.07998 * 120.00500 * 187.57093 * 7 2 1
9 9 N 1.36937 * 119.99832 * 7.56689 * 7 2 1
10 10 C 1.44580 * 118.64714 * 212.67062 * 9 7 2
11 11 C 1.54863 * 109.60079 * 270.72742 * 10 9 7
12 12 C 1.47098 * 110.31934 * 288.73198 * 11 10 9
13 13 C 1.52565 * 114.32629 * 62.80198 * 12 11 10
14 14 H 1.09005 * 109.48679 * 34.95511 * 13 12 11
15 15 C 1.53005 * 109.48770 * 154.99751 * 13 12 11
16 16 C 1.53041 * 109.45908 * 300.45738 * 15 13 12
17 17 C 1.53193 * 109.31177 * 178.61408 * 16 15 13
18 18 N 1.46928 * 108.77620 * 54.63652 * 17 16 15
19 19 C 1.34771 * 120.63066 * 126.36259 * 18 17 16
20 20 O 1.21689 * 120.00019 * 176.20197 * 19 18 17
21 21 C 1.46722 * 120.00215 * 356.21245 * 19 18 17
22 22 C 1.36341 * 126.64245 * 186.59730 * 21 19 18
23 23 N 1.33695 * 107.45237 * 179.83817 * 22 21 19
24 24 C 1.30627 * 108.99113 * 0.43385 * 23 22 21
25 25 O 1.33664 * 109.15770 * 359.72822 * 24 23 22
26 26 C 1.46925 * 118.73649 * 306.39140 * 18 17 16
27 27 C 1.53037 * 109.45763 * 180.39034 * 15 13 12
28 28 C 1.50878 * 109.36035 * 274.98505 * 13 12 11
29 29 C 1.47609 * 118.64050 * 32.64768 * 9 7 2
30 30 H 0.96999 * 120.00624 * 0.02562 * 1 2 3
31 31 H 1.09000 * 109.44922 * 150.68132 * 10 9 7
32 32 H 1.09004 * 109.44469 * 30.76454 * 10 9 7
33 33 H 1.08994 * 109.32702 * 168.47316 * 11 10 9
34 34 H 1.09001 * 109.32752 * 48.99079 * 11 10 9
35 35 H 1.08998 * 108.50961 * 301.54844 * 12 11 10
36 36 H 1.08999 * 108.38503 * 183.96958 * 12 11 10
37 37 H 1.08993 * 109.45607 * 60.41643 * 15 13 12
38 38 H 1.09004 * 109.49881 * 298.56793 * 16 15 13
39 39 H 1.09007 * 109.49735 * 58.66370 * 16 15 13
40 40 H 1.08999 * 109.58699 * 294.84940 * 17 16 15
41 41 H 1.09002 * 109.70210 * 174.49100 * 17 16 15
42 42 H 1.08002 * 126.27522 * 0.02562 * 22 21 19
43 43 H 1.08000 * 125.42095 * 179.71052 * 24 23 22
44 44 H 1.08995 * 109.59095 * 293.81974 * 26 18 17
45 45 H 1.09000 * 109.70188 * 173.46441 * 26 18 17
46 46 H 1.09001 * 109.50157 * 301.33722 * 27 15 13
47 47 H 1.09006 * 109.49836 * 61.43356 * 27 15 13
48 48 H 1.08996 * 109.36588 * 212.07744 * 28 13 12
49 49 H 1.08999 * 109.36672 * 331.69973 * 28 13 12
50 50 H 1.08994 * 108.94717 * 258.55380 * 29 9 7
51 51 H 1.08997 * 108.94847 * 17.27387 * 29 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3161 0.0000 0.0000
3 14 2.2501 1.6177 0.0000
4 1 2.4975 2.0465 -1.4001
5 1 1.4475 2.6527 0.7000
6 1 3.5477 1.4402 0.7001
7 6 2.0103 -1.2021 -0.0005
8 1 3.0832 -1.2062 0.1227
9 7 1.3346 -2.3828 -0.1572
10 6 1.8355 -3.5622 0.5125
11 6 2.8484 -4.2900 -0.4054
12 6 2.1505 -4.9255 -1.5335
13 6 1.4351 -3.9480 -2.4611
14 1 2.0119 -3.0258 -2.5320
15 6 1.2967 -4.5718 -3.8513
16 6 2.6862 -4.8927 -4.4068
17 6 2.5422 -5.5486 -5.7837
18 7 1.7365 -4.6711 -6.6436
19 6 2.1966 -4.2796 -7.8484
20 8 1.4921 -3.6098 -8.5804
21 6 3.5468 -4.6611 -8.2774
22 6 4.1927 -4.2401 -9.4020
23 7 5.3974 -4.8198 -9.4133
24 6 5.5135 -5.5795 -8.3570
25 8 4.3901 -5.5038 -7.6366
26 6 0.4200 -4.2280 -6.1649
27 6 0.5877 -3.5869 -4.7837
28 6 0.0653 -3.6438 -1.9066
29 6 0.1246 -2.3988 -1.0025
30 1 -0.4851 0.8400 -0.0004
31 1 1.0052 -4.2311 0.7391
32 1 2.3297 -3.2708 1.4393
33 1 3.3732 -5.0527 0.1699
34 1 3.5711 -3.5693 -0.7880
35 1 1.4160 -5.6259 -1.1358
36 1 2.8804 -5.4859 -2.1177
37 1 0.7131 -5.4896 -3.7809
38 1 3.2620 -3.9720 -4.5007
39 1 3.1995 -5.5760 -3.7302
40 1 2.0459 -6.5134 -5.6788
41 1 3.5275 -5.6909 -6.2277
42 1 3.8037 -3.5603 -10.1456
43 1 6.3792 -6.1744 -8.1059
44 1 -0.2494 -5.0849 -6.0911
45 1 0.0035 -3.4976 -6.8586
46 1 -0.3925 -3.3406 -4.3755
47 1 1.1833 -2.6784 -4.8741
48 1 -0.6252 -3.4601 -2.7298
49 1 -0.2868 -4.4959 -1.3252
50 1 -0.7559 -2.3851 -0.3603
51 1 0.1190 -1.5071 -1.6294
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001075455868.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:57:04
Heat of formation + Delta-G solvation = -2.491862 kcal
Electronic energy + Delta-G solvation = -32023.971118 eV
Core-core repulsion = 27925.016283 eV
Total energy + Delta-G solvation = -4098.954835 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.98 seconds
Orbital eigenvalues (eV)
-44.51429 -41.33860 -40.06350 -38.29048 -36.29748 -35.75214 -34.31263 -32.86643
-32.48623 -31.94370 -31.12556 -28.20811 -26.91300 -25.45847 -25.34982 -24.13640
-23.83441 -23.47320 -22.03069 -21.09850 -20.76319 -20.49899 -18.77577 -18.47971
-18.15962 -17.90499 -17.21089 -16.93185 -16.45849 -16.02329 -15.79128 -15.43320
-15.30290 -15.28066 -15.09563 -15.01578 -14.80909 -14.32135 -14.18368 -14.11860
-13.81533 -13.43716 -13.25033 -12.95723 -12.79252 -12.72615 -12.59655 -12.49324
-12.33661 -12.24585 -12.04338 -11.99747 -11.80775 -11.51861 -11.44023 -11.29003
-11.27239 -11.19817 -10.90063 -10.65164 -10.43192 -10.29399 -9.73363 -8.51060
-7.83328 -5.36768 -0.25323 1.29150 1.40892 1.42424 1.43578 1.51840
1.87699 2.01740 2.49683 3.21169 3.30560 3.45768 3.68469 3.74181
3.84233 3.86446 3.88997 4.08736 4.11552 4.21955 4.32808 4.41401
4.43788 4.50885 4.54331 4.59127 4.63838 4.68242 4.79556 4.85424
4.88375 4.90289 4.97076 5.04490 5.10629 5.12943 5.22603 5.28266
5.30580 5.33688 5.40346 5.45642 5.46979 5.60057 5.61008 5.67932
5.78516 5.86983 5.89062 6.10493 6.46095 6.48976 6.79611 7.23263
8.00854 8.40229 9.19986
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.012773 B = 0.002818 C = 0.002705
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2191.522278 B = 9934.933564 C =10348.867649
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.935 5.935
2 C -0.045 4.045
3 Si 0.958 3.042
4 H -0.289 1.289
5 H -0.294 1.294
6 H -0.269 1.269
7 C -0.260 4.260
8 H 0.058 0.942
9 N -0.602 5.602
10 C 0.151 3.849
11 C -0.132 4.132
12 C -0.100 4.100
13 C -0.059 4.059
14 H 0.038 0.962
15 C -0.072 4.072
16 C -0.124 4.124
17 C 0.092 3.908
18 N -0.596 5.596
19 C 0.599 3.401
20 O -0.560 6.560
21 C -0.124 4.124
22 C 0.049 3.951
23 N -0.527 5.527
24 C 0.220 3.780
25 O -0.181 6.181
26 C 0.117 3.883
27 C -0.128 4.128
28 C -0.128 4.128
29 C 0.193 3.807
30 H 0.247 0.753
31 H 0.038 0.962
32 H 0.028 0.972
33 H 0.073 0.927
34 H 0.035 0.965
35 H 0.059 0.941
36 H 0.077 0.923
37 H 0.091 0.909
38 H 0.044 0.956
39 H 0.102 0.898
40 H 0.097 0.903
41 H 0.115 0.885
42 H 0.197 0.803
43 H 0.307 0.693
44 H 0.096 0.904
45 H 0.078 0.922
46 H 0.083 0.917
47 H 0.039 0.961
48 H 0.070 0.930
49 H 0.057 0.943
50 H -0.013 1.013
51 H 0.029 0.971
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.162 -18.956 -14.024 24.952
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.581 5.581
2 C -0.241 4.241
3 Si 0.787 3.213
4 H -0.216 1.216
5 H -0.221 1.221
6 H -0.193 1.193
7 C -0.391 4.391
8 H 0.075 0.925
9 N -0.325 5.325
10 C 0.024 3.976
11 C -0.172 4.172
12 C -0.137 4.137
13 C -0.078 4.078
14 H 0.057 0.943
15 C -0.090 4.090
16 C -0.162 4.162
17 C -0.028 4.028
18 N -0.326 5.326
19 C 0.387 3.613
20 O -0.441 6.441
21 C -0.178 4.178
22 C -0.093 4.093
23 N -0.254 5.254
24 C -0.003 4.003
25 O -0.069 6.069
26 C -0.004 4.004
27 C -0.166 4.166
28 C -0.166 4.166
29 C 0.068 3.932
30 H 0.056 0.944
31 H 0.057 0.943
32 H 0.046 0.954
33 H 0.091 0.909
34 H 0.054 0.946
35 H 0.078 0.922
36 H 0.095 0.905
37 H 0.109 0.891
38 H 0.063 0.937
39 H 0.120 0.880
40 H 0.115 0.885
41 H 0.132 0.868
42 H 0.214 0.786
43 H 0.321 0.679
44 H 0.114 0.886
45 H 0.096 0.904
46 H 0.102 0.898
47 H 0.058 0.942
48 H 0.088 0.912
49 H 0.075 0.925
50 H 0.005 0.995
51 H 0.048 0.952
Dipole moment (debyes) X Y Z Total
from point charges 8.110 -18.469 -14.750 24.988
hybrid contribution -0.371 1.778 0.788 1.980
sum 7.738 -16.690 -13.961 23.095
Atomic orbital electron populations
1.70171 1.06455 1.25405 1.56059 1.25876 0.96100 1.01201 1.00906
0.85404 0.78273 0.80246 0.77360 1.21604 1.22062 1.19331 1.19410
0.90547 0.85415 1.43742 0.92472 1.43766 1.29648 1.05352 1.53735
1.20881 0.95174 0.88059 0.93437 1.21304 0.98576 0.99058 0.98230
1.20445 0.99655 0.97492 0.96065 1.20407 0.95610 0.97931 0.93872
0.94339 1.21150 0.96387 0.98558 0.92934 1.22022 0.97153 1.01141
0.95887 1.22539 0.97167 0.93041 0.90092 1.48171 1.19689 1.48438
1.16341 1.16778 0.83134 0.79444 0.81911 1.90859 1.56939 1.41543
1.54779 1.22850 0.94226 1.02842 0.97924 1.23756 0.89617 0.99282
0.96645 1.70518 1.19054 1.12359 1.23516 1.29787 0.90069 0.95686
0.84792 1.84633 1.24652 1.51680 1.45935 1.21729 0.83060 1.00556
0.95105 1.22014 1.01855 0.98289 0.94475 1.22067 0.97672 0.98062
0.98811 1.20696 0.86663 0.95002 0.90846 0.94379 0.94325 0.95377
0.90856 0.94588 0.92244 0.90478 0.89072 0.93715 0.87958 0.88475
0.86769 0.78612 0.67850 0.88584 0.90366 0.89832 0.94206 0.91206
0.92458 0.99540 0.95211
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -56.01 10.96 21.65 0.24 -55.77 16
2 C -0.05 -2.57 5.04 84.86 0.43 -2.14 16
3 Si 0.96 45.88 29.56 68.60 2.03 47.90 16
4 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16
5 H -0.29 -14.14 7.11 99.48 0.71 -13.44 16
6 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16
7 C -0.26 -14.36 9.39 84.03 0.79 -13.57 16
8 H 0.06 3.13 7.84 -2.91 -0.02 3.10 16
9 N -0.60 -29.74 2.25 -698.29 -1.57 -31.31 16
10 C 0.15 6.12 5.65 87.37 0.49 6.61 16
11 C -0.13 -4.18 5.74 29.40 0.17 -4.01 16
12 C -0.10 -2.62 4.57 28.61 0.13 -2.49 16
13 C -0.06 -1.78 1.40 -11.63 -0.02 -1.80 16
14 H 0.04 1.51 7.48 -2.38 -0.02 1.49 16
15 C -0.07 -1.58 1.71 -10.77 -0.02 -1.60 16
16 C -0.12 -2.32 5.11 30.67 0.16 -2.17 16
17 C 0.09 1.45 6.32 86.36 0.55 2.00 16
18 N -0.60 -12.84 2.97 -823.55 -2.45 -15.29 16
19 C 0.60 15.21 7.67 86.46 0.66 15.87 16
20 O -0.56 -17.82 16.33 -4.31 -0.07 -17.90 16
21 C -0.12 -2.57 6.88 24.05 0.17 -2.41 16
22 C 0.05 1.00 11.67 83.97 0.98 1.98 16
23 N -0.53 -9.35 11.26 -315.08 -3.55 -12.89 16
24 C 0.22 2.22 13.21 130.42 1.72 3.94 16
25 O -0.18 -2.62 7.27 -7.13 -0.05 -2.67 16
26 C 0.12 2.53 6.42 86.37 0.55 3.09 16
27 C -0.13 -3.16 5.13 30.67 0.16 -3.00 16
28 C -0.13 -4.39 5.11 30.24 0.15 -4.23 16
29 C 0.19 9.25 4.63 86.50 0.40 9.65 16
30 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16
31 H 0.04 1.48 8.07 -2.39 -0.02 1.46 16
32 H 0.03 1.19 7.99 -2.39 -0.02 1.17 16
33 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16
34 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16
35 H 0.06 1.46 7.36 -2.39 -0.02 1.44 16
36 H 0.08 1.58 5.42 -2.39 -0.01 1.57 16
37 H 0.09 1.65 8.14 -2.39 -0.02 1.64 16
38 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16
39 H 0.10 1.54 5.92 -2.38 -0.01 1.52 16
40 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16
41 H 0.12 1.62 3.79 -51.58 -0.20 1.43 16
42 H 0.20 3.71 8.06 -2.91 -0.02 3.69 16
43 H 0.31 -0.77 8.06 -2.91 -0.02 -0.80 16
44 H 0.10 1.62 8.14 -2.39 -0.02 1.61 16
45 H 0.08 1.96 7.03 -2.39 -0.02 1.94 16
46 H 0.08 2.09 5.97 -2.39 -0.01 2.08 16
47 H 0.04 1.21 8.14 -2.38 -0.02 1.19 16
48 H 0.07 2.19 5.50 -2.39 -0.01 2.18 16
49 H 0.06 1.82 7.32 -2.39 -0.02 1.80 16
50 H -0.01 -0.73 7.97 -2.39 -0.02 -0.75 16
51 H 0.03 1.63 6.56 -2.39 -0.02 1.61 16
Total: -1.00 -74.68 383.20 2.80 -71.88
By element:
Atomic # 1 Polarization: 9.56 SS G_CDS: 0.75 Total: 10.31 kcal
Atomic # 6 Polarization: -1.75 SS G_CDS: 7.48 Total: 5.72 kcal
Atomic # 7 Polarization: -107.93 SS G_CDS: -7.33 Total: -115.26 kcal
Atomic # 8 Polarization: -20.44 SS G_CDS: -0.12 Total: -20.56 kcal
Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.90 kcal
Total: -74.68 2.80 -71.88 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001075455868.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 69.389 kcal
(2) G-P(sol) polarization free energy of solvation -74.682 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.293 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.801 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.881 kcal
(6) G-S(sol) free energy of system = (1) + (5) -2.492 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.99 seconds