Wall clock time and date at job start Wed Apr 1 2020 04:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86800 * 119.99611 * 2 1 4 4 H 1.48498 * 109.47035 * 239.99991 * 3 2 1 5 5 H 1.48503 * 109.47563 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46892 * 120.00284 * 3 2 1 7 7 C 1.38812 * 120.00160 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99861 * 194.45912 * 7 2 1 9 9 N 1.36939 * 119.99667 * 14.44888 * 7 2 1 10 10 C 1.46535 * 119.73426 * 205.16609 * 9 7 2 11 11 C 1.53149 * 108.25046 * 236.40192 * 10 9 7 12 12 C 1.53062 * 109.21745 * 301.59438 * 11 10 9 13 13 H 1.09003 * 113.84290 * 274.48000 * 12 11 10 14 14 C 1.54084 * 111.39625 * 142.39461 * 12 11 10 15 15 N 1.47287 * 87.60673 * 273.97235 * 14 12 11 16 16 C 1.34775 * 136.54140 * 151.36500 * 15 14 12 17 17 O 1.21281 * 119.99780 * 180.02562 * 16 15 14 18 18 C 1.50697 * 119.99893 * 0.02562 * 16 15 14 19 19 H 1.08993 * 109.87597 * 59.56312 * 18 16 15 20 20 C 1.54322 * 109.88245 * 298.54243 * 18 16 15 21 21 C 1.55157 * 103.10772 * 218.30264 * 20 18 16 22 22 C 1.55393 * 101.36247 * 35.49586 * 21 20 18 23 23 N 1.47020 * 109.88001 * 180.74090 * 18 16 15 24 24 C 1.34780 * 125.64922 * 298.38887 * 23 18 16 25 25 O 1.21289 * 119.99441 * 0.02562 * 24 23 18 26 26 C 1.50699 * 120.00339 * 180.02562 * 24 23 18 27 27 C 1.53000 * 117.49614 * 248.62243 * 26 24 23 28 28 C 1.52998 * 117.49768 * 180.02562 * 26 24 23 29 29 C 1.46469 * 86.91334 * 331.62207 * 15 14 12 30 30 H 1.09001 * 111.44075 * 276.12715 * 29 15 14 31 31 C 1.45699 * 119.73998 * 25.14966 * 9 7 2 32 32 H 0.96997 * 119.99672 * 359.97438 * 1 2 3 33 33 H 1.08998 * 109.70889 * 116.71668 * 10 9 7 34 34 H 1.09000 * 109.71307 * 356.09193 * 10 9 7 35 35 H 1.08999 * 109.51631 * 181.66455 * 11 10 9 36 36 H 1.09008 * 109.55814 * 61.53759 * 11 10 9 37 37 H 1.08999 * 113.52437 * 159.29004 * 14 12 11 38 38 H 1.09000 * 113.58955 * 28.66668 * 14 12 11 39 39 H 1.09005 * 110.72296 * 336.75825 * 20 18 16 40 40 H 1.08997 * 110.72034 * 99.84961 * 20 18 16 41 41 H 1.08995 * 111.00727 * 153.66324 * 21 20 18 42 42 H 1.08997 * 111.00659 * 277.52307 * 21 20 18 43 43 H 1.08996 * 110.34379 * 204.17058 * 22 21 20 44 44 H 1.09003 * 110.44074 * 81.91537 * 22 21 20 45 45 H 1.08997 * 115.54908 * 34.32899 * 26 24 23 46 46 H 1.09005 * 117.49903 * 359.97438 * 27 26 24 47 47 H 1.09001 * 117.49974 * 145.02139 * 27 26 24 48 48 H 1.09005 * 117.49918 * 214.97632 * 28 26 24 49 49 H 1.08998 * 117.50175 * 359.97438 * 28 26 24 50 50 H 1.09005 * 108.78692 * 260.91279 * 31 9 7 51 51 H 1.09003 * 108.78798 * 19.23954 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0647 -1.2170 0.2330 9 7 1.3581 -2.3691 -0.2970 10 6 1.8766 -3.6413 0.2130 11 6 2.1182 -4.5729 -0.9783 12 6 0.8051 -4.7670 -1.7404 13 1 0.1758 -5.5613 -1.3388 14 6 1.0419 -4.8287 -3.2617 15 7 0.9666 -3.3578 -3.2708 16 6 1.4785 -2.3566 -4.0137 17 8 1.2100 -1.2045 -3.7461 18 6 2.3844 -2.6686 -5.1769 19 1 1.8581 -3.2918 -5.8997 20 6 3.6485 -3.3987 -4.6764 21 6 4.7741 -2.7995 -5.5603 22 6 4.2936 -1.3297 -5.7132 23 7 2.8257 -1.4202 -5.8158 24 6 2.0214 -0.5090 -6.3983 25 8 0.8219 -0.6871 -6.4238 26 6 2.6123 0.7311 -7.0179 27 6 2.3231 2.0690 -6.3343 28 6 1.6468 1.7274 -7.6630 29 6 0.0892 -3.4745 -2.1038 30 1 -0.9438 -3.6590 -2.3988 31 6 0.1540 -2.3361 -1.1166 32 1 -0.4849 0.8400 0.0004 33 1 1.1489 -4.0903 0.8890 34 1 2.8141 -3.4706 0.7421 35 1 2.4769 -5.5375 -0.6193 36 1 2.8622 -4.1317 -1.6415 37 1 0.2311 -5.3094 -3.8091 38 1 2.0235 -5.2159 -3.5350 39 1 3.8281 -3.1813 -3.6234 40 1 3.5625 -4.4733 -4.8376 41 1 5.7374 -2.8482 -5.0526 42 1 4.8186 -3.2989 -6.5281 43 1 4.7105 -0.8868 -6.6177 44 1 4.5773 -0.7435 -4.8391 45 1 3.5899 0.6042 -7.4830 46 1 1.7050 2.0522 -5.4366 47 1 3.1105 2.8226 -6.3494 48 1 1.9891 2.2562 -8.5526 49 1 0.5842 1.4857 -7.6396 50 1 -0.7170 -2.3857 -0.4631 51 1 0.1280 -1.3940 -1.6644 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084706355.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:57 Heat of formation + Delta-G solvation = 40.887548 kcal Electronic energy + Delta-G solvation = -33566.573029 eV Core-core repulsion = 29469.499266 eV Total energy + Delta-G solvation = -4097.073763 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.77499 -39.92177 -38.07809 -36.66293 -35.77974 -35.14712 -32.14558 -31.67840 -30.25043 -30.01972 -28.17327 -26.84123 -25.18298 -23.81613 -23.34434 -22.41885 -22.29594 -21.69442 -20.89086 -19.92594 -18.71368 -17.75502 -17.44261 -17.25970 -16.14336 -15.79826 -15.62791 -15.23857 -14.93183 -14.51225 -14.21527 -14.08448 -13.87161 -13.57615 -13.39970 -13.22801 -13.11634 -12.87662 -12.67104 -12.56540 -12.29004 -12.00712 -11.91819 -11.59479 -11.50879 -11.37250 -11.32701 -11.01477 -10.97742 -10.62369 -10.59313 -10.55049 -10.46046 -10.43474 -10.16016 -9.82232 -9.73216 -9.61695 -9.53766 -9.03279 -8.43556 -8.18581 -7.98079 -6.54267 -5.60434 -3.02443 2.65985 2.91691 3.31722 3.48274 3.50017 3.55178 3.56877 3.94669 4.33958 4.40213 4.63780 4.71152 4.74149 4.77202 4.80095 4.91227 4.94253 5.09580 5.13267 5.25539 5.33558 5.48512 5.49274 5.52410 5.60188 5.61665 5.62855 5.65837 5.71879 5.74388 5.77938 5.80710 5.93935 6.00533 6.06308 6.17179 6.19184 6.21704 6.30440 6.41045 6.44198 6.59211 6.64764 6.82159 7.02943 7.56917 7.62840 7.82744 8.00376 8.39532 8.46553 8.62869 8.93580 9.40575 10.05406 10.52765 11.47592 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009057 B = 0.005465 C = 0.004124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3090.685940 B = 5122.518867 C = 6788.185357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.012 3.988 3 Si 0.900 3.100 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.253 4.253 8 H 0.060 0.940 9 N -0.584 5.584 10 C 0.148 3.852 11 C -0.114 4.114 12 C -0.112 4.112 13 H 0.090 0.910 14 C 0.093 3.907 15 N -0.633 5.633 16 C 0.534 3.466 17 O -0.494 6.494 18 C 0.128 3.872 19 H 0.091 0.909 20 C -0.121 4.121 21 C -0.130 4.130 22 C 0.101 3.899 23 N -0.599 5.599 24 C 0.566 3.434 25 O -0.525 6.525 26 C -0.189 4.189 27 C -0.149 4.149 28 C -0.149 4.149 29 C 0.122 3.878 30 H 0.068 0.932 31 C 0.167 3.833 32 H 0.252 0.748 33 H 0.018 0.982 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.059 0.941 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.073 0.927 45 H 0.120 0.880 46 H 0.104 0.896 47 H 0.102 0.898 48 H 0.100 0.900 49 H 0.107 0.893 50 H 0.028 0.972 51 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.288 -9.289 -14.007 19.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.186 4.186 3 Si 0.731 3.269 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.382 4.382 8 H 0.078 0.922 9 N -0.306 5.306 10 C 0.022 3.978 11 C -0.153 4.153 12 C -0.132 4.132 13 H 0.108 0.892 14 C -0.030 4.030 15 N -0.371 5.371 16 C 0.320 3.680 17 O -0.366 6.366 18 C 0.021 3.979 19 H 0.109 0.891 20 C -0.160 4.160 21 C -0.168 4.168 22 C -0.022 4.022 23 N -0.334 5.334 24 C 0.355 3.645 25 O -0.400 6.400 26 C -0.210 4.210 27 C -0.187 4.187 28 C -0.187 4.187 29 C 0.017 3.983 30 H 0.086 0.914 31 C 0.041 3.959 32 H 0.062 0.938 33 H 0.036 0.964 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.106 0.894 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.092 0.908 45 H 0.138 0.862 46 H 0.123 0.877 47 H 0.121 0.879 48 H 0.119 0.881 49 H 0.125 0.875 50 H 0.045 0.955 51 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 8.390 -8.292 -14.068 18.359 hybrid contribution 0.428 0.721 -0.105 0.845 sum 8.818 -7.571 -14.173 18.329 Atomic orbital electron populations 1.69993 1.05203 1.25322 1.54154 1.24906 0.95210 0.98034 1.00477 0.86404 0.78939 0.83933 0.77641 1.21153 1.21738 1.21255 1.18997 0.91514 0.84657 1.43057 0.92206 1.43447 1.29692 1.01504 1.55999 1.20711 0.97292 0.87345 0.92488 1.21837 0.94887 0.99209 0.99387 1.22688 0.98844 0.97740 0.93900 0.89151 1.23337 1.01029 0.81849 0.96810 1.49383 1.50187 1.05673 1.31862 1.19965 0.81189 0.84469 0.82393 1.90790 1.58693 1.19168 1.67976 1.21371 0.96094 0.86613 0.93854 0.89133 1.22642 0.92311 0.99740 1.01270 1.22857 0.98733 0.94765 1.00430 1.22432 0.79894 0.97680 1.02194 1.48024 1.07359 1.21193 1.56797 1.19181 0.85711 0.82438 0.77129 1.90704 1.14482 1.76356 1.58424 1.22097 1.01686 0.90195 1.07004 1.22956 1.03337 0.94722 0.97637 1.22928 0.99275 1.00004 0.96457 1.22450 0.92763 0.96752 0.86289 0.91415 1.20154 0.88680 0.96439 0.90597 0.93794 0.96392 0.92733 0.92789 0.92197 0.90757 0.91182 0.89428 0.89511 0.89367 0.90436 0.90405 0.90845 0.86247 0.87712 0.87922 0.88135 0.87490 0.95455 0.87865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.16 10.94 55.49 0.61 -27.55 16 2 C 0.01 0.37 4.94 -17.43 -0.09 0.29 16 3 Si 0.90 23.77 29.58 -169.99 -5.03 18.74 16 4 H -0.28 -7.59 7.11 56.52 0.40 -7.18 16 5 H -0.29 -7.75 7.11 56.52 0.40 -7.35 16 6 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 7 C -0.25 -7.30 9.53 -15.06 -0.14 -7.44 16 8 H 0.06 1.70 7.83 -52.49 -0.41 1.29 16 9 N -0.58 -15.07 3.03 -175.06 -0.53 -15.60 16 10 C 0.15 3.06 6.46 -3.95 -0.03 3.04 16 11 C -0.11 -1.84 5.69 -26.62 -0.15 -1.99 16 12 C -0.11 -1.72 4.57 -90.45 -0.41 -2.13 16 13 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 14 C 0.09 1.25 7.52 -11.54 -0.09 1.16 16 15 N -0.63 -11.88 3.30 -188.03 -0.62 -12.50 16 16 C 0.53 11.18 6.86 -10.99 -0.08 11.11 16 17 O -0.49 -13.21 14.26 -8.94 -0.13 -13.34 16 18 C 0.13 2.03 3.15 -68.11 -0.21 1.81 16 19 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 20 C -0.12 -1.41 5.58 -24.90 -0.14 -1.55 16 21 C -0.13 -1.17 7.12 -24.32 -0.17 -1.34 16 22 C 0.10 1.17 6.70 -2.26 -0.02 1.15 16 23 N -0.60 -9.52 2.84 -164.02 -0.47 -9.98 16 24 C 0.57 10.14 6.79 -10.98 -0.07 10.07 16 25 O -0.52 -11.59 15.51 -8.94 -0.14 -11.73 16 26 C -0.19 -2.58 5.54 -91.77 -0.51 -3.09 16 27 C -0.15 -2.05 10.23 -26.76 -0.27 -2.33 16 28 C -0.15 -1.88 10.04 -26.76 -0.27 -2.15 16 29 C 0.12 2.43 3.98 -77.96 -0.31 2.12 16 30 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 31 C 0.17 4.30 4.59 -5.57 -0.03 4.28 16 32 H 0.25 7.73 8.31 -40.82 -0.34 7.39 16 33 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.05 1.11 7.87 -51.93 -0.41 0.70 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.06 1.04 7.68 -51.92 -0.40 0.64 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.07 0.77 6.71 -51.93 -0.35 0.42 16 39 H 0.09 1.23 7.84 -51.93 -0.41 0.82 16 40 H 0.09 0.78 7.41 -51.93 -0.38 0.39 16 41 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.08 0.68 7.00 -51.93 -0.36 0.32 16 44 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 45 H 0.12 1.23 7.07 -51.93 -0.37 0.86 16 46 H 0.10 1.80 8.14 -51.93 -0.42 1.38 16 47 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 48 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 49 H 0.11 1.56 7.67 -51.93 -0.40 1.16 16 50 H 0.03 0.76 8.00 -51.93 -0.42 0.35 16 51 H 0.10 3.16 4.95 -51.93 -0.26 2.90 16 LS Contribution 396.14 15.07 5.97 5.97 Total: -1.00 -38.76 396.14 -11.69 -50.45 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -8.37 Total: 2.55 kcal Atomic # 6 Polarization: 15.98 SS G_CDS: -2.99 Total: 13.00 kcal Atomic # 7 Polarization: -64.63 SS G_CDS: -1.01 Total: -65.64 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: -0.27 Total: -25.08 kcal Atomic # 14 Polarization: 23.77 SS G_CDS: -5.03 Total: 18.74 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -38.76 -11.69 -50.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084706355.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.339 kcal (2) G-P(sol) polarization free energy of solvation -38.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds