Wall clock time and date at job start Wed Apr 1 2020 04:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00125 * 2 1 4 4 H 1.48493 * 109.47397 * 269.99910 * 3 2 1 5 5 H 1.48510 * 109.46813 * 29.99739 * 3 2 1 6 6 H 1.48495 * 109.47179 * 149.99357 * 3 2 1 7 7 C 1.38815 * 120.00325 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00267 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99408 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99589 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.47131 * 35.00777 * 10 9 7 12 12 C 1.52998 * 109.47262 * 275.00203 * 10 9 7 13 13 C 1.52996 * 109.47019 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.47270 * 59.99765 * 13 12 10 15 15 C 1.52998 * 109.47292 * 300.00068 * 14 13 12 16 16 C 1.52996 * 109.47048 * 60.00174 * 15 14 13 17 17 H 1.08994 * 109.47414 * 59.99906 * 16 15 14 18 18 N 1.46501 * 109.47264 * 180.02562 * 16 15 14 19 19 C 1.34774 * 119.99987 * 274.99912 * 18 16 15 20 20 O 1.21617 * 119.99740 * 359.97438 * 19 18 16 21 21 C 1.47412 * 120.00369 * 179.97438 * 19 18 16 22 22 C 1.36094 * 126.44879 * 179.68478 * 21 19 18 23 23 O 1.34264 * 106.94570 * 179.90322 * 22 21 19 24 24 C 1.34050 * 108.22865 * 0.36573 * 23 22 21 25 25 C 1.50696 * 125.37694 * 179.73360 * 24 23 22 26 26 C 1.54266 * 110.03533 * 57.95034 * 25 24 23 27 27 C 1.54967 * 104.15982 * 217.13569 * 26 25 24 28 28 C 1.54887 * 102.77640 * 37.88677 * 27 26 25 29 29 C 1.53877 * 110.03351 * 300.72848 * 25 24 23 30 30 N 1.29932 * 109.24379 * 359.77002 * 24 23 22 31 31 H 0.97000 * 119.99693 * 0.02562 * 1 2 3 32 32 H 0.96995 * 120.00302 * 0.27434 * 9 7 2 33 33 H 1.09002 * 109.46901 * 299.99917 * 12 10 9 34 34 H 1.09001 * 109.47093 * 60.00233 * 12 10 9 35 35 H 1.09007 * 109.47060 * 179.97438 * 13 12 10 36 36 H 1.09002 * 109.46968 * 299.99571 * 13 12 10 37 37 H 1.09007 * 109.46959 * 60.00323 * 14 13 12 38 38 H 1.09002 * 109.46987 * 180.02562 * 14 13 12 39 39 H 1.09001 * 109.47093 * 179.97438 * 15 14 13 40 40 H 1.08994 * 109.47090 * 299.99882 * 15 14 13 41 41 H 0.96997 * 120.00050 * 94.99754 * 18 16 15 42 42 H 1.08000 * 126.52713 * 0.04114 * 22 21 19 43 43 H 1.09003 * 110.01340 * 179.34236 * 25 24 23 44 44 H 1.09000 * 110.48201 * 335.78453 * 26 25 24 45 45 H 1.09001 * 110.48393 * 98.42535 * 26 25 24 46 46 H 1.09001 * 110.71744 * 279.57102 * 27 26 25 47 47 H 1.09002 * 110.92125 * 156.29687 * 27 26 25 48 48 H 1.09002 * 110.48099 * 203.40227 * 28 27 26 49 49 H 1.09007 * 110.59909 * 80.81663 * 28 27 26 50 50 H 1.08995 * 110.03404 * 238.57075 * 29 25 24 51 51 H 1.09006 * 110.03118 * 359.95732 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9687 -3.5505 0.5901 12 6 2.4221 -4.0356 -1.4364 13 6 3.1865 -5.3609 -1.4364 14 6 2.3089 -6.4559 -0.8270 15 6 1.9449 -6.0771 0.6100 16 6 1.1804 -4.7519 0.6100 17 1 0.2698 -4.8577 0.0204 18 7 0.8324 -4.3888 1.9860 19 6 -0.2857 -4.8852 2.5516 20 8 -1.0059 -5.6341 1.9196 21 6 -0.6356 -4.5203 3.9364 22 6 -1.7293 -4.9375 4.6306 23 8 -1.6593 -4.3733 5.8469 24 6 -0.5519 -3.6196 5.8965 25 6 -0.1010 -2.8084 7.0838 26 6 0.0786 -3.7243 8.3121 27 6 -0.4121 -2.8622 9.5027 28 6 -1.6191 -2.1012 8.9001 29 6 -1.1796 -1.7765 7.4575 30 7 0.0710 -3.6983 4.7590 31 1 -0.4850 0.8401 -0.0004 32 1 0.3556 -2.3880 -0.0039 33 1 1.5114 -4.1419 -2.0259 34 1 3.0470 -3.2552 -1.8707 35 1 3.4454 -5.6310 -2.4603 36 1 4.0972 -5.2550 -0.8469 37 1 1.3982 -6.5618 -1.4167 38 1 2.8537 -7.4000 -0.8266 39 1 1.3193 -6.8571 1.0440 40 1 2.8555 -5.9713 1.1995 41 1 1.4067 -3.7912 2.4899 42 1 -2.5045 -5.5986 4.2723 43 1 0.8368 -2.3021 6.8552 44 1 -0.5336 -4.6206 8.2124 45 1 1.1280 -3.9901 8.4395 46 1 0.3641 -2.1660 9.8204 47 1 -0.7284 -3.4915 10.3346 48 1 -1.8080 -1.1835 9.4571 49 1 -2.5072 -2.7332 8.8953 50 1 -0.7650 -0.7696 7.4111 51 1 -2.0289 -1.8620 6.7795 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085378520.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:40 Heat of formation + Delta-G solvation = -32.891775 kcal Electronic energy + Delta-G solvation = -31141.058363 eV Core-core repulsion = 27040.785288 eV Total energy + Delta-G solvation = -4100.273074 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.41554 -39.59381 -38.33255 -37.72017 -34.80843 -33.99650 -33.63228 -31.41415 -31.10286 -29.33894 -29.03629 -28.22794 -27.62527 -24.24924 -23.65212 -22.53564 -21.93655 -21.06924 -20.98373 -20.48226 -19.88332 -19.26783 -17.84597 -17.09309 -16.79283 -16.52808 -15.99505 -15.81562 -15.56866 -14.92993 -14.52759 -14.16834 -14.05301 -13.88700 -13.69596 -13.64707 -13.50433 -13.35642 -12.91653 -12.59529 -12.15489 -12.07862 -12.05494 -11.81742 -11.43366 -11.40962 -11.14276 -11.05742 -11.04037 -10.88759 -10.86884 -10.82257 -10.73995 -10.69778 -10.55356 -10.30953 -10.14009 -9.86927 -9.65596 -9.59442 -8.97521 -8.88368 -8.52063 -6.94711 -5.74022 -3.03448 1.19153 2.11090 2.54857 3.40135 3.44074 3.49054 3.50690 3.60721 3.82519 4.24724 4.28603 4.58688 4.61725 4.89427 4.93545 5.09433 5.09688 5.14886 5.17057 5.18808 5.26199 5.34303 5.35184 5.54338 5.55052 5.55439 5.56462 5.61660 5.68627 5.74625 5.78244 5.84359 5.87221 5.92456 5.97645 5.98473 6.00720 6.02426 6.13034 6.14840 6.35441 6.48580 6.50452 6.54126 6.61087 6.87947 6.92147 7.10752 7.52476 7.71063 7.99012 8.42810 8.54504 9.54696 10.11088 10.46295 11.48081 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008282 B = 0.003415 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3379.840421 B = 8196.680702 C =10651.979025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.010 4.010 3 Si 0.904 3.096 4 H -0.291 1.291 5 H -0.293 1.293 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.721 5.721 10 C 0.173 3.827 11 H 0.051 0.949 12 C -0.133 4.133 13 C -0.120 4.120 14 C -0.113 4.113 15 C -0.124 4.124 16 C 0.140 3.860 17 H 0.085 0.915 18 N -0.686 5.686 19 C 0.601 3.399 20 O -0.549 6.549 21 C -0.060 4.060 22 C 0.001 3.999 23 O -0.196 6.196 24 C 0.202 3.798 25 C 0.004 3.996 26 C -0.119 4.119 27 C -0.123 4.123 28 C -0.124 4.124 29 C -0.121 4.121 30 N -0.451 5.451 31 H 0.254 0.746 32 H 0.384 0.616 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.412 0.588 42 H 0.229 0.771 43 H 0.118 0.882 44 H 0.072 0.928 45 H 0.076 0.924 46 H 0.072 0.928 47 H 0.070 0.930 48 H 0.069 0.931 49 H 0.068 0.932 50 H 0.079 0.921 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.035 -11.028 15.849 19.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.207 4.207 3 Si 0.736 3.264 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.361 5.361 10 C 0.062 3.938 11 H 0.069 0.931 12 C -0.174 4.174 13 C -0.158 4.158 14 C -0.151 4.151 15 C -0.163 4.163 16 C 0.035 3.965 17 H 0.104 0.896 18 N -0.334 5.334 19 C 0.386 3.614 20 O -0.428 6.428 21 C -0.180 4.180 22 C -0.073 4.073 23 O -0.083 6.083 24 C -0.007 4.007 25 C -0.016 4.016 26 C -0.158 4.158 27 C -0.161 4.161 28 C -0.162 4.162 29 C -0.160 4.160 30 N -0.180 5.180 31 H 0.064 0.936 32 H 0.218 0.782 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.248 0.752 42 H 0.245 0.755 43 H 0.136 0.864 44 H 0.091 0.909 45 H 0.095 0.905 46 H 0.090 0.910 47 H 0.089 0.911 48 H 0.088 0.912 49 H 0.086 0.914 50 H 0.098 0.902 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.146 -11.061 15.266 18.852 hybrid contribution -0.298 0.957 0.068 1.004 sum -0.152 -10.105 15.334 18.365 Atomic orbital electron populations 1.69675 1.05093 1.25524 1.57443 1.24721 0.95418 0.97568 1.02946 0.86236 0.78668 0.84093 0.77448 1.21818 1.21897 1.20774 1.19196 0.90889 0.84002 1.42903 0.91207 1.42403 1.05787 0.99473 1.88472 1.20464 0.93948 0.85749 0.93591 0.93089 1.22222 0.99965 0.95535 0.99646 1.21586 0.98549 0.95683 0.99961 1.21471 0.99925 0.98027 0.95698 1.21878 1.00065 0.97133 0.97251 1.21378 0.99175 0.94208 0.81773 0.89646 1.45720 1.24398 1.48080 1.15165 1.16712 0.81335 0.80206 0.83181 1.90781 1.51526 1.37620 1.62893 1.21899 0.96150 1.02485 0.97503 1.25225 1.00729 0.99470 0.81867 1.84331 1.41467 1.49179 1.33276 1.26161 0.83116 0.95081 0.96389 1.20466 1.00365 0.93451 0.87295 1.22501 1.02267 0.98143 0.92841 1.22510 0.97873 0.98540 0.97153 1.22380 0.98250 1.00452 0.95083 1.22259 0.97972 0.98589 0.97144 1.70841 1.29570 1.16602 1.00969 0.93601 0.78169 0.92434 0.91546 0.92662 0.92363 0.91925 0.92364 0.91917 0.91956 0.75187 0.75493 0.86397 0.90888 0.90495 0.90967 0.91118 0.91179 0.91356 0.90185 0.91065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.26 13.06 55.49 0.72 -27.53 16 2 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 3 Si 0.90 22.40 29.55 -169.99 -5.02 17.38 16 4 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.24 -6.52 9.93 -15.06 -0.15 -6.67 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.72 -17.84 4.95 -53.42 -0.26 -18.10 16 10 C 0.17 3.39 2.29 -67.92 -0.16 3.24 16 11 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 12 C -0.13 -2.35 5.50 -26.73 -0.15 -2.50 16 13 C -0.12 -1.67 5.92 -26.73 -0.16 -1.83 16 14 C -0.11 -1.51 5.92 -26.73 -0.16 -1.67 16 15 C -0.12 -1.85 5.49 -26.73 -0.15 -1.99 16 16 C 0.14 2.50 1.98 -67.93 -0.13 2.37 16 17 H 0.09 1.71 7.58 -51.93 -0.39 1.32 16 18 N -0.69 -12.62 4.90 -54.88 -0.27 -12.89 16 19 C 0.60 11.23 7.78 -12.53 -0.10 11.13 16 20 O -0.55 -11.12 16.55 5.26 0.09 -11.04 16 21 C -0.06 -1.01 6.99 -83.02 -0.58 -1.59 16 22 C 0.00 0.01 11.95 29.96 0.36 0.37 16 23 O -0.20 -2.55 10.58 6.49 0.07 -2.48 16 24 C 0.20 2.73 6.50 -13.08 -0.08 2.64 16 25 C 0.00 0.04 3.44 -90.65 -0.31 -0.28 16 26 C -0.12 -0.94 6.36 -25.03 -0.16 -1.10 16 27 C -0.12 -0.79 6.91 -24.70 -0.17 -0.96 16 28 C -0.12 -0.89 6.83 -25.07 -0.17 -1.06 16 29 C -0.12 -1.11 6.45 -25.61 -0.17 -1.28 16 30 N -0.45 -7.41 11.06 -7.66 -0.08 -7.50 16 31 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 32 H 0.38 10.51 7.80 -40.82 -0.32 10.20 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.41 7.76 8.33 -40.82 -0.34 7.42 16 42 H 0.23 2.38 8.06 -52.49 -0.42 1.95 16 43 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.07 0.61 7.72 -51.93 -0.40 0.21 16 45 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 47 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 51 H 0.07 0.75 7.67 -51.93 -0.40 0.35 16 LS Contribution 411.21 15.07 6.20 6.20 Total: -1.00 -32.33 411.21 -9.67 -42.00 By element: Atomic # 1 Polarization: 24.10 SS G_CDS: -8.58 Total: 15.52 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: -2.53 Total: -1.55 kcal Atomic # 7 Polarization: -66.13 SS G_CDS: 0.11 Total: -66.03 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: 0.16 Total: -13.52 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -32.33 -9.67 -42.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085378520.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.112 kcal (2) G-P(sol) polarization free energy of solvation -32.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds