Wall clock time and date at job start Wed Apr 1 2020 04:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 119.99705 * 2 1 4 4 H 1.48492 * 109.47227 * 239.99752 * 3 2 1 5 5 H 1.48500 * 109.47306 * 0.02562 * 3 2 1 6 6 H 1.48511 * 109.47087 * 120.00091 * 3 2 1 7 7 C 1.38806 * 120.00321 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99938 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00094 * 0.02562 * 7 2 1 10 10 C 1.46503 * 120.00056 * 180.02562 * 9 7 2 11 11 H 1.08995 * 109.47545 * 34.99092 * 10 9 7 12 12 C 1.53003 * 109.46660 * 274.99354 * 10 9 7 13 13 C 1.52997 * 109.47241 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47114 * 59.99975 * 13 12 10 15 15 C 1.53003 * 109.47087 * 300.00120 * 14 13 12 16 16 C 1.52997 * 109.47241 * 59.99958 * 15 14 13 17 17 H 1.09004 * 109.46812 * 60.00212 * 16 15 14 18 18 N 1.46498 * 109.47036 * 180.02562 * 16 15 14 19 19 C 1.34777 * 119.99828 * 274.72131 * 18 16 15 20 20 O 1.21583 * 119.99943 * 0.28074 * 19 18 16 21 21 C 1.47511 * 119.99935 * 180.27949 * 19 18 16 22 22 C 1.36826 * 126.94031 * 180.02562 * 21 19 18 23 23 C 1.41271 * 103.84479 * 179.97438 * 22 21 19 24 24 C 1.50698 * 126.70655 * 180.02562 * 23 22 21 25 25 C 1.54265 * 110.03097 * 32.90426 * 24 23 22 26 26 C 1.54971 * 104.16124 * 217.13827 * 25 24 23 27 27 C 1.54884 * 102.77647 * 37.88869 * 26 25 24 28 28 C 1.53879 * 110.02987 * 275.68928 * 24 23 22 29 29 N 1.30132 * 106.58867 * 359.97438 * 23 22 21 30 30 O 1.20886 * 111.98163 * 359.70386 * 29 23 22 31 31 H 0.96999 * 120.00722 * 359.97438 * 1 2 3 32 32 H 0.96998 * 120.00006 * 359.97438 * 9 7 2 33 33 H 1.09004 * 109.47044 * 299.99840 * 12 10 9 34 34 H 1.08997 * 109.47066 * 59.99946 * 12 10 9 35 35 H 1.09003 * 109.47189 * 180.02562 * 13 12 10 36 36 H 1.08995 * 109.47096 * 299.99819 * 13 12 10 37 37 H 1.08995 * 109.47266 * 59.99948 * 14 13 12 38 38 H 1.09000 * 109.47204 * 180.02562 * 14 13 12 39 39 H 1.09009 * 109.46941 * 299.99855 * 15 14 13 40 40 H 1.08997 * 109.47066 * 180.02562 * 15 14 13 41 41 H 0.97001 * 120.00384 * 95.00578 * 18 16 15 42 42 H 1.08000 * 128.07903 * 359.96693 * 22 21 19 43 43 H 1.08998 * 110.01537 * 154.29610 * 24 23 22 44 44 H 1.08995 * 110.48865 * 335.78420 * 25 24 23 45 45 H 1.08999 * 110.48511 * 98.43119 * 25 24 23 46 46 H 1.09001 * 110.71701 * 279.57526 * 26 25 24 47 47 H 1.08996 * 110.92117 * 156.29750 * 26 25 24 48 48 H 1.09001 * 110.49016 * 203.41098 * 27 26 25 49 49 H 1.08998 * 110.59889 * 80.81750 * 27 26 25 50 50 H 1.08999 * 110.02973 * 238.56343 * 28 24 23 51 51 H 1.08998 * 110.03237 * 359.97438 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0583 -3.6567 0.0017 11 1 2.9686 -3.5502 0.5916 12 6 2.4231 -4.0361 -1.4350 13 6 3.1876 -5.3614 -1.4340 14 6 2.3096 -6.4562 -0.8247 15 6 1.9448 -6.0768 0.6120 16 6 1.1802 -4.7516 0.6110 17 1 0.2699 -4.8578 0.0209 18 7 0.8315 -4.3880 1.9866 19 6 -0.2898 -4.8797 2.5499 20 8 -1.0093 -5.6291 1.9181 21 6 -0.6443 -4.5088 3.9329 22 6 -1.7405 -4.9219 4.6399 23 6 -1.5970 -4.2815 5.8909 24 6 -2.5324 -4.3842 7.0679 25 6 -3.1706 -5.7879 7.1147 26 6 -4.6225 -5.5286 7.5907 27 6 -4.9887 -4.2078 6.8693 28 6 -3.6877 -3.3798 6.9123 29 7 -0.4987 -3.5864 5.8286 30 8 0.0493 -3.7011 4.7572 31 1 -0.4851 0.8400 0.0004 32 1 0.3557 -2.3881 0.0005 33 1 1.5127 -4.1427 -2.0249 34 1 3.0482 -3.2560 -1.8692 35 1 3.4479 -5.6315 -2.4575 36 1 4.0979 -5.2553 -0.8440 37 1 1.3993 -6.5624 -1.4147 38 1 2.8544 -7.4003 -0.8236 39 1 2.8552 -5.9707 1.2021 40 1 1.3196 -6.8570 1.0462 41 1 1.4054 -3.7901 2.4907 42 1 -2.5310 -5.5831 4.3169 43 1 -1.9904 -4.1895 7.9933 44 1 -3.1696 -6.2407 6.1233 45 1 -2.6430 -6.4233 7.8259 46 1 -4.6564 -5.4000 8.6726 47 1 -5.2846 -6.3359 7.2781 48 1 -5.7874 -3.6911 7.4014 49 1 -5.2827 -4.4030 5.8380 50 1 -3.7070 -2.6982 7.7626 51 1 -3.5715 -2.8178 5.9856 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085427610.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:17 Heat of formation + Delta-G solvation = 7.248354 kcal Electronic energy + Delta-G solvation = -31083.830998 eV Core-core repulsion = 26985.298530 eV Total energy + Delta-G solvation = -4098.532468 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.95841 -39.80990 -38.59863 -37.89703 -34.24372 -34.03768 -33.70143 -32.00409 -31.16090 -29.38041 -28.99298 -28.87973 -27.74739 -24.28905 -23.70980 -23.39759 -21.93573 -21.13474 -20.90466 -20.78402 -19.96453 -19.27607 -18.15201 -17.65127 -17.14782 -16.32186 -16.07763 -15.80063 -15.38767 -15.07838 -14.68737 -14.37515 -14.00541 -13.86919 -13.72073 -13.59358 -13.46109 -13.32621 -12.98777 -12.68419 -12.23515 -12.17089 -12.13727 -11.91629 -11.53157 -11.38177 -11.35991 -11.10800 -10.94673 -10.93163 -10.90350 -10.77489 -10.76095 -10.62221 -10.38194 -10.20447 -10.07816 -10.05351 -9.74811 -9.69244 -9.63727 -8.93777 -8.75551 -7.00915 -5.78769 -3.08968 0.90493 2.04020 2.73546 3.18127 3.40221 3.42748 3.47268 3.48254 3.84631 4.20796 4.35367 4.54733 4.64215 4.67939 4.95593 5.01896 5.09105 5.10145 5.14323 5.19742 5.24681 5.25428 5.36881 5.39086 5.46141 5.48211 5.51173 5.60212 5.64733 5.67557 5.75279 5.76828 5.85269 5.89482 5.90764 5.93714 5.94569 6.05442 6.06491 6.08467 6.26181 6.38520 6.43129 6.44134 6.54338 6.72554 6.84566 7.02106 7.60753 7.66613 8.11469 8.25206 8.38081 9.50009 10.05011 10.40017 11.43023 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009519 B = 0.003078 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2940.900869 B = 9095.883051 C =11319.567698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.009 4.009 3 Si 0.905 3.095 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.242 4.242 8 H 0.070 0.930 9 N -0.722 5.722 10 C 0.172 3.828 11 H 0.053 0.947 12 C -0.133 4.133 13 C -0.120 4.120 14 C -0.113 4.113 15 C -0.125 4.125 16 C 0.139 3.861 17 H 0.089 0.911 18 N -0.688 5.688 19 C 0.604 3.396 20 O -0.523 6.523 21 C -0.069 4.069 22 C -0.157 4.157 23 C 0.018 3.982 24 C -0.013 4.013 25 C -0.119 4.119 26 C -0.124 4.124 27 C -0.125 4.125 28 C -0.117 4.117 29 N -0.346 5.346 30 O 0.121 5.879 31 H 0.256 0.744 32 H 0.385 0.615 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.411 0.589 42 H 0.180 0.820 43 H 0.090 0.910 44 H 0.075 0.925 45 H 0.071 0.929 46 H 0.068 0.932 47 H 0.070 0.930 48 H 0.067 0.933 49 H 0.069 0.931 50 H 0.071 0.929 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.815 -14.620 11.552 19.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.206 4.206 3 Si 0.736 3.264 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.212 1.212 7 C -0.373 4.373 8 H 0.088 0.912 9 N -0.363 5.363 10 C 0.062 3.938 11 H 0.071 0.929 12 C -0.174 4.174 13 C -0.158 4.158 14 C -0.151 4.151 15 C -0.164 4.164 16 C 0.035 3.965 17 H 0.107 0.893 18 N -0.337 5.337 19 C 0.387 3.613 20 O -0.400 6.400 21 C -0.135 4.135 22 C -0.179 4.179 23 C -0.140 4.140 24 C -0.033 4.033 25 C -0.157 4.157 26 C -0.161 4.161 27 C -0.162 4.162 28 C -0.155 4.155 29 N -0.046 5.046 30 O 0.048 5.952 31 H 0.065 0.935 32 H 0.219 0.781 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.246 0.754 42 H 0.197 0.803 43 H 0.109 0.891 44 H 0.094 0.906 45 H 0.089 0.911 46 H 0.087 0.913 47 H 0.088 0.912 48 H 0.086 0.914 49 H 0.088 0.912 50 H 0.090 0.910 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.565 -14.166 11.961 18.880 hybrid contribution -0.068 0.945 -0.224 0.974 sum -3.632 -13.220 11.738 18.048 Atomic orbital electron populations 1.69652 1.05100 1.25802 1.57120 1.24731 0.95438 0.97641 1.02743 0.86309 0.78553 0.83709 0.77824 1.21307 1.21776 1.21235 1.19140 0.90888 0.83938 1.43379 0.91191 1.42408 1.05787 0.99465 1.88596 1.20478 0.93940 0.85650 0.93752 0.92909 1.22220 1.00029 0.95582 0.99530 1.21590 0.98555 0.95640 1.00054 1.21469 0.99987 0.98111 0.95570 1.21888 1.00148 0.96903 0.97467 1.21459 0.99483 0.94480 0.81108 0.89312 1.45853 1.23890 1.48063 1.15856 1.16507 0.81801 0.80888 0.82128 1.90835 1.51344 1.36734 1.61071 1.24355 0.95659 0.98493 0.95034 1.22702 0.99631 1.03272 0.92306 1.23539 0.95374 0.97550 0.97514 1.20196 0.93170 0.96728 0.93160 1.22513 0.95709 0.95061 1.02405 1.22502 0.95831 0.97598 1.00191 1.22377 0.97006 0.95802 1.01056 1.22206 0.93171 0.97398 1.02769 1.73733 1.09932 1.19441 1.01498 1.85015 1.42237 1.50806 1.17097 0.93452 0.78144 0.92385 0.91458 0.92611 0.92315 0.91876 0.92262 0.91763 0.91794 0.75353 0.80284 0.89130 0.90624 0.91058 0.91341 0.91175 0.91411 0.91244 0.91037 0.91225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.59 13.06 55.49 0.72 -26.87 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 3 Si 0.91 22.04 29.55 -169.99 -5.02 17.01 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.24 -6.39 9.93 -15.06 -0.15 -6.54 16 8 H 0.07 1.79 7.83 -52.48 -0.41 1.37 16 9 N -0.72 -16.96 4.95 -53.42 -0.26 -17.23 16 10 C 0.17 3.15 2.29 -67.93 -0.16 2.99 16 11 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 12 C -0.13 -2.21 5.50 -26.73 -0.15 -2.36 16 13 C -0.12 -1.57 5.92 -26.73 -0.16 -1.72 16 14 C -0.11 -1.39 5.92 -26.73 -0.16 -1.54 16 15 C -0.12 -1.67 5.50 -26.73 -0.15 -1.82 16 16 C 0.14 2.27 1.98 -67.93 -0.13 2.13 16 17 H 0.09 1.62 7.57 -51.93 -0.39 1.23 16 18 N -0.69 -11.18 4.90 -54.86 -0.27 -11.45 16 19 C 0.60 10.12 7.79 -12.48 -0.10 10.03 16 20 O -0.52 -9.77 16.57 5.29 0.09 -9.69 16 21 C -0.07 -1.07 7.29 -36.31 -0.26 -1.33 16 22 C -0.16 -2.11 9.88 -38.94 -0.38 -2.50 16 23 C 0.02 0.24 6.01 -82.16 -0.49 -0.26 16 24 C -0.01 -0.13 3.43 -90.65 -0.31 -0.44 16 25 C -0.12 -0.95 6.32 -25.03 -0.16 -1.11 16 26 C -0.12 -0.84 6.91 -24.70 -0.17 -1.01 16 27 C -0.12 -0.97 6.83 -25.07 -0.17 -1.14 16 28 C -0.12 -1.11 6.45 -25.61 -0.17 -1.27 16 29 N -0.35 -5.35 12.04 33.52 0.40 -4.95 16 30 O 0.12 1.93 11.04 15.55 0.17 2.10 16 31 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.38 9.99 7.80 -40.82 -0.32 9.67 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.80 8.14 -51.92 -0.42 0.38 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.41 6.55 8.43 -40.82 -0.34 6.20 16 42 H 0.18 2.08 7.28 -52.49 -0.38 1.69 16 43 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.08 0.63 6.25 -51.93 -0.32 0.30 16 45 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 47 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 50 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 51 H 0.07 0.79 7.67 -51.93 -0.40 0.39 16 LS Contribution 408.24 15.07 6.15 6.15 Total: -1.00 -30.32 408.24 -9.85 -40.17 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: -8.47 Total: 12.99 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: -3.36 Total: -8.25 kcal Atomic # 7 Polarization: -61.08 SS G_CDS: 0.59 Total: -60.49 kcal Atomic # 8 Polarization: -7.84 SS G_CDS: 0.26 Total: -7.59 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -30.32 -9.85 -40.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085427610.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.417 kcal (2) G-P(sol) polarization free energy of solvation -30.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds