Wall clock time and date at job start Wed Apr 1 2020 04:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86798 * 120.00034 * 2 1 4 4 H 1.48502 * 109.46835 * 270.00003 * 3 2 1 5 5 H 1.48505 * 109.47040 * 29.99801 * 3 2 1 6 6 H 1.48495 * 109.47481 * 149.99725 * 3 2 1 7 7 C 1.38812 * 120.00163 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00239 * 179.97438 * 7 2 1 9 9 N 1.36942 * 120.00166 * 0.02562 * 7 2 1 10 10 C 1.47023 * 125.64366 * 0.02562 * 9 7 2 11 11 C 1.54328 * 107.27033 * 178.89472 * 10 9 7 12 12 C 1.55161 * 102.94207 * 337.80961 * 11 10 9 13 13 H 1.08999 * 110.99869 * 277.38903 * 12 11 10 14 14 O 1.42896 * 111.00228 * 153.57467 * 12 11 10 15 15 C 1.42907 * 113.99668 * 150.00185 * 14 12 11 16 16 C 1.52997 * 109.47013 * 179.97438 * 15 14 12 17 17 C 1.53039 * 109.46112 * 174.99938 * 16 15 14 18 18 C 1.53191 * 109.31388 * 181.38525 * 17 16 15 19 19 N 1.46927 * 108.77541 * 305.36379 * 18 17 16 20 20 C 1.34776 * 120.63405 * 233.58303 * 19 18 17 21 21 O 1.21687 * 120.00323 * 180.14439 * 20 19 18 22 22 C 1.46682 * 119.99591 * 0.14626 * 20 19 18 23 23 C 1.37870 * 126.23340 * 150.80850 * 22 20 19 24 24 C 1.39833 * 107.08443 * 180.24511 * 23 22 20 25 25 C 1.35456 * 107.86773 * 359.63073 * 24 23 22 26 26 N 1.35535 * 108.86574 * 0.37368 * 25 24 23 27 27 H 0.97001 * 125.67707 * 179.76261 * 26 25 24 28 28 C 1.46934 * 118.73846 * 53.86028 * 19 18 17 29 29 C 1.53045 * 109.46052 * 295.06728 * 16 15 14 30 30 C 1.47422 * 125.64971 * 179.97438 * 9 7 2 31 31 H 0.96998 * 120.00462 * 0.02562 * 1 2 3 32 32 H 1.09004 * 109.88641 * 59.48128 * 10 9 7 33 33 H 1.08996 * 109.88391 * 298.31086 * 10 9 7 34 34 H 1.08997 * 110.72140 * 219.44411 * 11 10 9 35 35 H 1.08998 * 110.71731 * 96.16842 * 11 10 9 36 36 H 1.09001 * 109.47168 * 60.00034 * 15 14 12 37 37 H 1.09000 * 109.46889 * 299.99827 * 15 14 12 38 38 H 1.09004 * 109.44869 * 55.02939 * 16 15 14 39 39 H 1.08996 * 109.49728 * 61.43236 * 17 16 15 40 40 H 1.08998 * 109.52059 * 301.35071 * 17 16 15 41 41 H 1.08996 * 109.59078 * 185.57688 * 18 17 16 42 42 H 1.09007 * 109.58715 * 65.14802 * 18 17 16 43 43 H 1.07998 * 126.45578 * 359.97438 * 23 22 20 44 44 H 1.08000 * 126.06841 * 179.77276 * 24 23 22 45 45 H 1.07992 * 125.56848 * 180.15984 * 25 24 23 46 46 H 1.09002 * 109.58593 * 65.92484 * 28 19 18 47 47 H 1.08996 * 109.58450 * 186.34899 * 28 19 18 48 48 H 1.09003 * 109.49804 * 298.56710 * 29 16 15 49 49 H 1.09000 * 109.49911 * 58.62775 * 29 16 15 50 50 H 1.09001 * 110.36420 * 85.33685 * 30 9 7 51 51 H 1.08997 * 110.37081 * 323.00945 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0463 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1375 -2.5328 -0.0005 11 6 -0.4484 -4.0442 -0.0285 12 6 0.8524 -4.6558 -0.6127 13 1 0.8577 -4.5958 -1.7010 14 8 1.0249 -6.0054 -0.1759 15 6 1.7251 -6.8327 -1.1072 16 6 1.8515 -8.2473 -0.5381 17 6 2.4896 -9.1630 -1.5852 18 6 2.5828 -10.5856 -1.0247 19 7 3.3000 -10.5429 0.2569 20 6 4.3742 -11.3288 0.4693 21 8 4.9580 -11.2860 1.5361 22 6 4.8395 -12.2355 -0.5856 23 6 6.1373 -12.6561 -0.7847 24 6 6.1287 -13.5026 -1.8977 25 6 4.8527 -13.5890 -2.3442 26 7 4.0601 -12.8211 -1.5573 27 1 3.1029 -12.7038 -1.6616 28 6 2.8202 -9.6317 1.3050 29 6 2.7276 -8.2158 0.7163 30 6 1.9335 -3.7312 0.0005 31 1 -0.4851 0.8400 -0.0004 32 1 -0.5570 -2.0517 -0.8841 33 1 -0.5549 -2.0851 0.9013 34 1 -1.2980 -4.2511 -0.6793 35 1 -0.6323 -4.4187 0.9784 36 1 2.7194 -6.4217 -1.2823 37 1 1.1753 -6.8668 -2.0477 38 1 0.8618 -8.6246 -0.2804 39 1 3.4890 -8.8002 -1.8251 40 1 1.8777 -9.1667 -2.4872 41 1 3.1252 -11.2199 -1.7259 42 1 1.5800 -10.9836 -0.8692 43 1 6.9990 -12.3801 -0.1950 44 1 6.9866 -14.0009 -2.3242 45 1 4.5216 -14.1716 -3.1911 46 1 1.8363 -9.9535 1.6465 47 1 3.5192 -9.6364 2.1413 48 1 3.7249 -7.8619 0.4548 49 1 2.2850 -7.5448 1.4525 50 1 2.1656 -4.0425 1.0190 51 1 2.8335 -3.7403 -0.6143 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088227620.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:04 Heat of formation + Delta-G solvation = 5.668829 kcal Electronic energy + Delta-G solvation = -30363.592382 eV Core-core repulsion = 26264.991421 eV Total energy + Delta-G solvation = -4098.600961 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.90620 -39.95522 -38.59635 -37.62992 -35.93004 -33.72995 -32.13545 -31.99310 -31.15419 -29.68455 -29.18892 -27.76243 -26.80235 -24.45625 -24.06027 -23.64895 -22.01482 -21.28635 -20.55770 -20.33948 -20.19930 -19.92761 -18.20991 -16.97450 -16.82071 -16.54402 -15.97744 -15.78705 -15.32801 -14.75226 -14.55918 -14.44783 -14.38422 -14.30967 -14.12369 -13.72828 -13.64030 -13.26166 -13.14275 -12.96252 -12.70567 -12.64590 -12.48817 -12.22981 -12.01520 -11.66498 -11.61614 -11.17012 -11.03732 -10.89541 -10.87766 -10.78118 -10.55051 -10.33173 -10.19788 -10.09018 -9.78822 -9.72123 -9.38705 -9.09775 -9.07467 -8.60630 -8.60461 -6.84411 -5.71894 -3.05894 1.15398 2.32398 2.48884 2.63857 3.05524 3.39838 3.44782 3.46968 3.76376 4.08765 4.27326 4.49107 4.50452 4.60524 4.65187 4.70322 4.86697 4.94337 4.99382 5.04294 5.14426 5.29350 5.29599 5.34772 5.41495 5.47843 5.53356 5.58307 5.62290 5.67484 5.69740 5.73989 5.75560 5.80947 5.85675 5.91030 6.15405 6.20402 6.26919 6.32821 6.47346 6.51389 6.52582 6.67811 6.71974 6.88665 7.00169 7.54678 7.60593 7.60954 7.78481 7.81716 8.24791 9.20964 9.81084 10.46673 11.39818 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.022169 B = 0.001781 C = 0.001745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.702880 B =15717.272613 C =16044.368458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.009 4.009 3 Si 0.913 3.087 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.228 4.228 8 H 0.078 0.922 9 N -0.604 5.604 10 C 0.178 3.822 11 C -0.139 4.139 12 C 0.073 3.927 13 H 0.065 0.935 14 O -0.377 6.377 15 C 0.068 3.932 16 C -0.084 4.084 17 C -0.128 4.128 18 C 0.090 3.910 19 N -0.610 5.610 20 C 0.589 3.411 21 O -0.528 6.528 22 C -0.051 4.051 23 C -0.111 4.111 24 C -0.208 4.208 25 C 0.014 3.986 26 N -0.544 5.544 27 H 0.419 0.581 28 C 0.112 3.888 29 C -0.126 4.126 30 C 0.121 3.879 31 H 0.252 0.748 32 H 0.048 0.952 33 H 0.046 0.954 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.047 0.953 37 H 0.045 0.955 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.074 0.926 43 H 0.146 0.854 44 H 0.143 0.857 45 H 0.171 0.829 46 H 0.070 0.930 47 H 0.096 0.904 48 H 0.067 0.933 49 H 0.090 0.910 50 H 0.028 0.972 51 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.094 -29.168 -6.878 30.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.205 4.205 3 Si 0.744 3.256 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.356 4.356 8 H 0.096 0.904 9 N -0.332 5.332 10 C 0.054 3.946 11 C -0.178 4.178 12 C 0.015 3.985 13 H 0.083 0.917 14 O -0.296 6.296 15 C -0.009 4.009 16 C -0.103 4.103 17 C -0.166 4.166 18 C -0.034 4.034 19 N -0.343 5.343 20 C 0.377 3.623 21 O -0.404 6.404 22 C -0.163 4.163 23 C -0.138 4.138 24 C -0.233 4.233 25 C -0.121 4.121 26 N -0.145 5.145 27 H 0.262 0.738 28 C -0.010 4.010 29 C -0.164 4.164 30 C -0.006 4.006 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.099 0.901 39 H 0.091 0.909 40 H 0.098 0.902 41 H 0.107 0.893 42 H 0.092 0.908 43 H 0.164 0.836 44 H 0.161 0.839 45 H 0.188 0.812 46 H 0.089 0.911 47 H 0.114 0.886 48 H 0.086 0.914 49 H 0.109 0.891 50 H 0.045 0.955 51 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 4.104 -28.931 -6.080 29.846 hybrid contribution 0.032 1.065 -0.546 1.197 sum 4.137 -27.866 -6.626 28.940 Atomic orbital electron populations 1.69954 1.04884 1.25074 1.57118 1.24817 0.95762 0.97706 1.02253 0.86095 0.78605 0.83383 0.77545 1.21610 1.21626 1.20662 1.19064 0.90455 0.82293 1.43783 0.90417 1.44362 1.01752 0.99747 1.87361 1.21165 0.84399 0.87727 1.01341 1.23004 0.95311 0.98881 1.00566 1.23409 0.97382 0.80211 0.97498 0.91692 1.87849 1.76594 1.21122 1.44027 1.22458 0.96188 0.90292 0.92006 1.21102 0.99865 0.93976 0.95308 1.21883 1.02305 0.93966 0.98445 1.22185 0.97209 0.98749 0.85239 1.48088 1.29465 1.41033 1.15751 1.17171 0.79593 0.79544 0.85952 1.90847 1.55969 1.68497 1.25040 1.20373 0.92553 1.06966 0.96415 1.21331 0.94864 0.98991 0.98602 1.20924 0.96761 1.05480 1.00092 1.22100 0.91355 0.99916 0.98712 1.42764 1.10334 1.37364 1.24072 0.73818 1.21819 1.00189 0.88554 0.90409 1.22006 1.00563 0.95926 0.97930 1.21880 0.94424 0.86537 0.97754 0.93719 0.93418 0.93588 0.91994 0.91508 0.93440 0.93647 0.90111 0.90880 0.90223 0.89319 0.90780 0.83594 0.83878 0.81157 0.91138 0.88579 0.91394 0.89126 0.95476 0.94619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.27 10.31 55.49 0.57 -26.70 16 2 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 3 Si 0.91 22.27 29.55 -169.99 -5.02 17.24 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.23 -6.45 10.28 -15.06 -0.15 -6.61 16 8 H 0.08 2.13 7.83 -52.49 -0.41 1.71 16 9 N -0.60 -15.81 3.39 -170.07 -0.58 -16.39 16 10 C 0.18 4.39 5.37 -3.06 -0.02 4.38 16 11 C -0.14 -2.69 6.69 -24.89 -0.17 -2.86 16 12 C 0.07 1.33 3.54 -24.58 -0.09 1.25 16 13 H 0.07 1.14 7.83 -51.93 -0.41 0.74 16 14 O -0.38 -5.92 9.66 -35.23 -0.34 -6.26 16 15 C 0.07 0.81 5.15 37.16 0.19 1.00 16 16 C -0.08 -0.78 2.39 -90.58 -0.22 -1.00 16 17 C -0.13 -0.89 5.36 -26.61 -0.14 -1.03 16 18 C 0.09 0.54 5.57 -3.71 -0.02 0.52 16 19 N -0.61 -5.59 2.97 -174.04 -0.52 -6.11 16 20 C 0.59 6.76 7.63 -12.85 -0.10 6.66 16 21 O -0.53 -8.00 16.42 5.20 0.09 -7.91 16 22 C -0.05 -0.48 6.37 -81.98 -0.52 -1.00 16 23 C -0.11 -1.05 10.77 -39.12 -0.42 -1.47 16 24 C -0.21 -1.46 10.81 -39.98 -0.43 -1.89 16 25 C 0.01 0.07 11.89 -16.91 -0.20 -0.13 16 26 N -0.54 -3.22 4.74 -9.39 -0.04 -3.27 16 27 H 0.42 1.42 6.47 -40.82 -0.26 1.16 16 28 C 0.11 1.08 6.46 -3.48 -0.02 1.06 16 29 C -0.13 -1.30 5.29 -26.39 -0.14 -1.44 16 30 C 0.12 2.60 6.97 -2.53 -0.02 2.58 16 31 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 32 H 0.05 1.28 7.38 -51.93 -0.38 0.89 16 33 H 0.05 1.25 7.51 -51.93 -0.39 0.86 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.05 0.50 8.12 -51.93 -0.42 0.07 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.09 0.43 3.87 -51.93 -0.20 0.22 16 42 H 0.07 0.32 8.14 -51.92 -0.42 -0.10 16 43 H 0.15 1.36 8.06 -52.49 -0.42 0.93 16 44 H 0.14 0.74 8.06 -52.49 -0.42 0.31 16 45 H 0.17 0.31 8.06 -52.49 -0.42 -0.11 16 46 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 47 H 0.10 1.07 7.00 -51.93 -0.36 0.71 16 48 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 49 H 0.09 1.05 7.79 -51.93 -0.40 0.65 16 50 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 51 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 400.22 15.07 6.03 6.03 Total: -1.00 -34.52 400.22 -10.68 -45.20 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -8.30 Total: -1.50 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: -2.56 Total: -0.34 kcal Atomic # 7 Polarization: -51.90 SS G_CDS: -0.57 Total: -52.46 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: -0.26 Total: -14.17 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.52 -10.68 -45.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088227620.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.866 kcal (2) G-P(sol) polarization free energy of solvation -34.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds