Wall clock time and date at job start Wed Apr 1 2020 04:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86798 * 120.00034 * 2 1 4 4 H 1.48502 * 109.46835 * 270.00003 * 3 2 1 5 5 H 1.48505 * 109.47040 * 29.99801 * 3 2 1 6 6 H 1.48495 * 109.47481 * 149.99725 * 3 2 1 7 7 C 1.38812 * 120.00163 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00239 * 179.97438 * 7 2 1 9 9 N 1.36942 * 120.00166 * 0.02562 * 7 2 1 10 10 C 1.47023 * 125.64366 * 0.02562 * 9 7 2 11 11 C 1.54328 * 107.27033 * 178.89472 * 10 9 7 12 12 C 1.55161 * 102.94207 * 337.80961 * 11 10 9 13 13 H 1.08999 * 110.99869 * 277.38903 * 12 11 10 14 14 O 1.42896 * 111.00228 * 153.57467 * 12 11 10 15 15 C 1.42907 * 113.99668 * 150.00185 * 14 12 11 16 16 C 1.52997 * 109.47013 * 179.97438 * 15 14 12 17 17 C 1.53039 * 109.46112 * 174.99938 * 16 15 14 18 18 C 1.53191 * 109.31388 * 181.38525 * 17 16 15 19 19 N 1.46927 * 108.77541 * 305.36379 * 18 17 16 20 20 C 1.34776 * 120.63405 * 233.58303 * 19 18 17 21 21 O 1.21687 * 120.00323 * 180.14439 * 20 19 18 22 22 C 1.46682 * 119.99591 * 0.14626 * 20 19 18 23 23 C 1.37870 * 126.23340 * 150.80850 * 22 20 19 24 24 C 1.39833 * 107.08443 * 180.24511 * 23 22 20 25 25 C 1.35456 * 107.86773 * 359.63073 * 24 23 22 26 26 N 1.35535 * 108.86574 * 0.37368 * 25 24 23 27 27 H 0.97001 * 125.67707 * 179.76261 * 26 25 24 28 28 C 1.46934 * 118.73846 * 53.86028 * 19 18 17 29 29 C 1.53045 * 109.46052 * 295.06728 * 16 15 14 30 30 C 1.47422 * 125.64971 * 179.97438 * 9 7 2 31 31 H 0.96998 * 120.00462 * 0.02562 * 1 2 3 32 32 H 1.09004 * 109.88641 * 59.48128 * 10 9 7 33 33 H 1.08996 * 109.88391 * 298.31086 * 10 9 7 34 34 H 1.08997 * 110.72140 * 219.44411 * 11 10 9 35 35 H 1.08998 * 110.71731 * 96.16842 * 11 10 9 36 36 H 1.09001 * 109.47168 * 60.00034 * 15 14 12 37 37 H 1.09000 * 109.46889 * 299.99827 * 15 14 12 38 38 H 1.09004 * 109.44869 * 55.02939 * 16 15 14 39 39 H 1.08996 * 109.49728 * 61.43236 * 17 16 15 40 40 H 1.08998 * 109.52059 * 301.35071 * 17 16 15 41 41 H 1.08996 * 109.59078 * 185.57688 * 18 17 16 42 42 H 1.09007 * 109.58715 * 65.14802 * 18 17 16 43 43 H 1.07998 * 126.45578 * 359.97438 * 23 22 20 44 44 H 1.08000 * 126.06841 * 179.77276 * 24 23 22 45 45 H 1.07992 * 125.56848 * 180.15984 * 25 24 23 46 46 H 1.09002 * 109.58593 * 65.92484 * 28 19 18 47 47 H 1.08996 * 109.58450 * 186.34899 * 28 19 18 48 48 H 1.09003 * 109.49804 * 298.56710 * 29 16 15 49 49 H 1.09000 * 109.49911 * 58.62775 * 29 16 15 50 50 H 1.09001 * 110.36420 * 85.33685 * 30 9 7 51 51 H 1.08997 * 110.37081 * 323.00945 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0463 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1375 -2.5328 -0.0005 11 6 -0.4484 -4.0442 -0.0285 12 6 0.8524 -4.6558 -0.6127 13 1 0.8577 -4.5958 -1.7010 14 8 1.0249 -6.0054 -0.1759 15 6 1.7251 -6.8327 -1.1072 16 6 1.8515 -8.2473 -0.5381 17 6 2.4896 -9.1630 -1.5852 18 6 2.5828 -10.5856 -1.0247 19 7 3.3000 -10.5429 0.2569 20 6 4.3742 -11.3288 0.4693 21 8 4.9580 -11.2860 1.5361 22 6 4.8395 -12.2355 -0.5856 23 6 6.1373 -12.6561 -0.7847 24 6 6.1287 -13.5026 -1.8977 25 6 4.8527 -13.5890 -2.3442 26 7 4.0601 -12.8211 -1.5573 27 1 3.1029 -12.7038 -1.6616 28 6 2.8202 -9.6317 1.3050 29 6 2.7276 -8.2158 0.7163 30 6 1.9335 -3.7312 0.0005 31 1 -0.4851 0.8400 -0.0004 32 1 -0.5570 -2.0517 -0.8841 33 1 -0.5549 -2.0851 0.9013 34 1 -1.2980 -4.2511 -0.6793 35 1 -0.6323 -4.4187 0.9784 36 1 2.7194 -6.4217 -1.2823 37 1 1.1753 -6.8668 -2.0477 38 1 0.8618 -8.6246 -0.2804 39 1 3.4890 -8.8002 -1.8251 40 1 1.8777 -9.1667 -2.4872 41 1 3.1252 -11.2199 -1.7259 42 1 1.5800 -10.9836 -0.8692 43 1 6.9990 -12.3801 -0.1950 44 1 6.9866 -14.0009 -2.3242 45 1 4.5216 -14.1716 -3.1911 46 1 1.8363 -9.9535 1.6465 47 1 3.5192 -9.6364 2.1413 48 1 3.7249 -7.8619 0.4548 49 1 2.2850 -7.5448 1.4525 50 1 2.1656 -4.0425 1.0190 51 1 2.8335 -3.7403 -0.6143 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088227620.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:03 Heat of formation + Delta-G solvation = -15.920290 kcal Electronic energy + Delta-G solvation = -30364.528556 eV Core-core repulsion = 26264.991421 eV Total energy + Delta-G solvation = -4099.537136 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.49697 -40.69590 -39.90126 -38.72421 -37.38193 -34.78246 -33.94263 -32.67424 -31.75938 -31.13775 -30.25407 -29.08310 -28.12068 -26.33081 -24.89257 -24.39744 -22.75771 -22.06395 -21.90473 -21.77142 -21.13810 -20.78476 -19.01787 -18.83233 -17.91072 -17.55252 -16.73389 -16.67216 -16.57210 -16.31127 -15.90703 -15.66806 -15.17210 -15.10234 -14.94820 -14.73158 -14.69786 -14.28713 -14.23873 -14.03427 -13.82722 -13.71975 -13.59681 -13.21009 -13.16013 -13.11807 -12.93913 -12.73847 -12.33592 -12.28585 -12.18224 -12.04909 -11.82876 -11.72231 -11.70827 -11.43306 -11.39782 -11.17172 -10.74174 -10.41042 -9.96237 -9.83687 -9.15932 -8.94972 -7.88182 -5.25116 0.49216 1.44489 1.46748 1.55574 1.73501 1.81440 2.08140 2.39047 2.45156 2.66184 3.30288 3.47073 3.66282 3.68496 3.76261 3.85210 3.90227 4.02495 4.07089 4.17326 4.23313 4.29216 4.33824 4.38809 4.43431 4.49101 4.54428 4.61653 4.62361 4.68291 4.74014 4.81132 4.83641 4.88178 4.95956 5.01697 5.03646 5.08506 5.11566 5.15294 5.27214 5.39075 5.40910 5.45913 5.61704 5.71143 5.76094 5.92140 6.14082 6.25662 6.36519 6.53856 6.98070 7.06390 7.72241 8.36541 9.22077 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.022169 B = 0.001781 C = 0.001745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.702880 B =15717.272613 C =16044.368458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.066 4.066 3 Si 0.982 3.018 4 H -0.282 1.282 5 H -0.292 1.292 6 H -0.271 1.271 7 C -0.247 4.247 8 H 0.081 0.919 9 N -0.626 5.626 10 C 0.185 3.815 11 C -0.126 4.126 12 C 0.095 3.905 13 H 0.078 0.922 14 O -0.381 6.381 15 C 0.060 3.940 16 C -0.076 4.076 17 C -0.122 4.122 18 C 0.087 3.913 19 N -0.606 5.606 20 C 0.582 3.418 21 O -0.581 6.581 22 C -0.077 4.077 23 C -0.134 4.134 24 C -0.227 4.227 25 C 0.042 3.958 26 N -0.530 5.530 27 H 0.433 0.567 28 C 0.115 3.885 29 C -0.121 4.121 30 C 0.116 3.884 31 H 0.249 0.751 32 H 0.020 0.980 33 H 0.009 0.991 34 H 0.090 0.910 35 H 0.071 0.929 36 H 0.040 0.960 37 H 0.067 0.933 38 H 0.093 0.907 39 H 0.059 0.941 40 H 0.108 0.892 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.130 0.870 44 H 0.159 0.841 45 H 0.216 0.784 46 H 0.089 0.911 47 H 0.072 0.928 48 H 0.049 0.951 49 H 0.074 0.926 50 H 0.020 0.980 51 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.301 -31.588 -9.559 33.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.259 4.259 3 Si 0.809 3.191 4 H -0.209 1.209 5 H -0.219 1.219 6 H -0.196 1.196 7 C -0.375 4.375 8 H 0.098 0.902 9 N -0.354 5.354 10 C 0.060 3.940 11 C -0.164 4.164 12 C 0.036 3.964 13 H 0.096 0.904 14 O -0.300 6.300 15 C -0.017 4.017 16 C -0.095 4.095 17 C -0.160 4.160 18 C -0.035 4.035 19 N -0.338 5.338 20 C 0.373 3.627 21 O -0.462 6.462 22 C -0.189 4.189 23 C -0.161 4.161 24 C -0.251 4.251 25 C -0.094 4.094 26 N -0.132 5.132 27 H 0.278 0.722 28 C -0.007 4.007 29 C -0.160 4.160 30 C -0.010 4.010 31 H 0.058 0.942 32 H 0.038 0.962 33 H 0.027 0.973 34 H 0.108 0.892 35 H 0.090 0.910 36 H 0.058 0.942 37 H 0.085 0.915 38 H 0.111 0.889 39 H 0.078 0.922 40 H 0.126 0.874 41 H 0.122 0.878 42 H 0.122 0.878 43 H 0.148 0.852 44 H 0.177 0.823 45 H 0.232 0.768 46 H 0.107 0.893 47 H 0.090 0.910 48 H 0.068 0.932 49 H 0.092 0.908 50 H 0.037 0.963 51 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 3.289 -31.376 -8.792 32.751 hybrid contribution 0.331 1.740 0.265 1.791 sum 3.620 -29.636 -8.527 31.050 Atomic orbital electron populations 1.70170 1.06257 1.25472 1.57973 1.25696 0.96729 1.01100 1.02350 0.85035 0.77542 0.78841 0.77632 1.20913 1.21879 1.19584 1.19445 0.90968 0.83630 1.43492 0.90158 1.44669 1.02640 1.00881 1.87221 1.20930 0.83642 0.91203 0.98202 1.22828 0.96970 0.94800 1.01782 1.23014 0.94806 0.81004 0.97600 0.90444 1.87848 1.76994 1.19823 1.45340 1.22754 0.95691 0.90791 0.92436 1.21088 1.00298 0.92959 0.95124 1.21867 1.01875 0.93583 0.98670 1.22466 0.98499 0.98672 0.83826 1.48170 1.28942 1.39921 1.16736 1.17540 0.79519 0.79883 0.85780 1.90806 1.57756 1.70349 1.27244 1.20045 0.93115 1.08291 0.97489 1.21492 0.94830 1.00057 0.99745 1.21202 0.98542 1.05642 0.99687 1.22786 0.90383 0.97923 0.98325 1.42717 1.10945 1.36630 1.22947 0.72159 1.21722 1.00404 0.88490 0.90113 1.21916 0.99786 0.95851 0.98425 1.22033 0.95777 0.85479 0.97716 0.94206 0.96224 0.97275 0.89171 0.91047 0.94205 0.91500 0.88911 0.92179 0.87353 0.87792 0.87829 0.85160 0.82345 0.76757 0.89320 0.90954 0.93175 0.90751 0.96264 0.94158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.71 10.31 21.65 0.22 -57.49 16 2 C -0.07 -3.80 5.49 84.86 0.47 -3.34 16 3 Si 0.98 46.34 29.55 68.60 2.03 48.37 16 4 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 5 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 6 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 7 C -0.25 -14.21 10.28 84.03 0.86 -13.35 16 8 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 9 N -0.63 -33.37 3.39 -691.97 -2.35 -35.72 16 10 C 0.19 9.34 5.37 86.73 0.47 9.81 16 11 C -0.13 -4.71 6.69 31.79 0.21 -4.50 16 12 C 0.09 3.29 3.54 31.99 0.11 3.40 16 13 H 0.08 2.53 7.83 -2.39 -0.02 2.51 16 14 O -0.38 -11.17 9.66 -148.98 -1.44 -12.61 16 15 C 0.06 1.27 5.15 71.98 0.37 1.64 16 16 C -0.08 -1.22 2.39 -10.77 -0.03 -1.25 16 17 C -0.12 -1.28 5.36 30.67 0.16 -1.12 16 18 C 0.09 0.76 5.57 86.36 0.48 1.24 16 19 N -0.61 -10.56 2.97 -822.76 -2.44 -13.00 16 20 C 0.58 13.66 7.63 86.45 0.66 14.32 16 21 O -0.58 -18.95 16.42 -4.31 -0.07 -19.02 16 22 C -0.08 -1.40 6.37 40.35 0.26 -1.15 16 23 C -0.13 -2.55 10.77 22.57 0.24 -2.31 16 24 C -0.23 -2.75 10.81 22.01 0.24 -2.51 16 25 C 0.04 0.28 11.89 83.48 0.99 1.27 16 26 N -0.53 -4.65 4.74 -183.62 -0.87 -5.52 16 27 H 0.43 1.15 6.47 -92.71 -0.60 0.55 16 28 C 0.11 2.21 6.46 86.51 0.56 2.77 16 29 C -0.12 -2.47 5.29 30.82 0.16 -2.31 16 30 C 0.12 4.98 6.97 86.86 0.61 5.59 16 31 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 32 H 0.02 1.08 7.38 -2.38 -0.02 1.06 16 33 H 0.01 0.51 7.51 -2.39 -0.02 0.49 16 34 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16 35 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 36 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.07 1.19 8.12 -2.39 -0.02 1.17 16 38 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 39 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.10 0.60 3.87 -2.39 -0.01 0.60 16 42 H 0.10 0.39 8.14 -2.38 -0.02 0.37 16 43 H 0.13 2.72 8.06 -2.91 -0.02 2.69 16 44 H 0.16 1.31 8.06 -2.91 -0.02 1.28 16 45 H 0.22 -0.51 8.06 -2.91 -0.02 -0.53 16 46 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 47 H 0.07 1.75 7.00 -2.39 -0.02 1.73 16 48 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 49 H 0.07 1.75 7.79 -2.39 -0.02 1.73 16 50 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 51 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -79.86 400.22 2.23 -77.62 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: 0.33 Total: 9.15 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: 6.83 Total: 8.21 kcal Atomic # 7 Polarization: -106.28 SS G_CDS: -5.44 Total: -111.72 kcal Atomic # 8 Polarization: -30.12 SS G_CDS: -1.51 Total: -31.63 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -79.86 2.23 -77.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088227620.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.704 kcal (2) G-P(sol) polarization free energy of solvation -79.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds