Wall clock time and date at job start Wed Apr 1 2020 04:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86803 * 120.00190 * 2 1 4 4 H 1.48495 * 109.47430 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47150 * 300.00417 * 3 2 1 6 6 H 1.48502 * 109.46892 * 60.00257 * 3 2 1 7 7 C 1.38813 * 120.00241 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00167 * 179.97438 * 7 2 1 9 9 N 1.36943 * 119.99602 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00023 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.51859 * 34.87267 * 10 9 7 12 12 C 1.53792 * 109.52419 * 155.00064 * 10 9 7 13 13 C 1.52441 * 109.40666 * 197.80555 * 12 10 9 14 14 C 1.53954 * 110.73217 * 246.27733 * 13 12 10 15 15 C 1.52873 * 109.73443 * 44.35934 * 14 13 12 16 16 C 1.53444 * 109.38378 * 72.89609 * 15 14 13 17 17 N 1.45329 * 108.41947 * 282.28132 * 16 15 14 18 18 C 1.34775 * 120.36635 * 136.65674 * 17 16 15 19 19 O 1.21615 * 119.99964 * 186.28075 * 18 17 16 20 20 C 1.47417 * 120.00286 * 6.27717 * 18 17 16 21 21 C 1.36092 * 126.45251 * 186.91919 * 20 18 17 22 22 O 1.34254 * 106.94992 * 179.97438 * 21 20 18 23 23 C 1.34044 * 108.22796 * 0.02562 * 22 21 20 24 24 C 1.50708 * 125.37962 * 180.02562 * 23 22 21 25 25 C 1.53778 * 113.61201 * 39.15523 * 24 23 22 26 26 C 1.53961 * 87.01885 * 220.05087 * 25 24 23 27 27 C 1.53784 * 113.60828 * 301.54846 * 24 23 22 28 28 N 1.29931 * 109.24594 * 0.25900 * 23 22 21 29 29 C 1.46966 * 119.26809 * 316.93142 * 17 16 15 30 30 H 0.97000 * 120.00085 * 359.97438 * 1 2 3 31 31 H 0.96999 * 119.99923 * 0.02562 * 9 7 2 32 32 H 1.09005 * 109.48297 * 77.82196 * 12 10 9 33 33 H 1.09000 * 109.48520 * 317.78392 * 12 10 9 34 34 H 1.08994 * 109.23091 * 125.95196 * 13 12 10 35 35 H 1.09003 * 109.22328 * 6.59399 * 13 12 10 36 36 H 1.09000 * 109.42335 * 284.28021 * 14 13 12 37 37 H 1.09004 * 109.38743 * 164.41643 * 14 13 12 38 38 H 1.08999 * 109.48790 * 312.92538 * 15 14 13 39 39 H 1.08996 * 109.49135 * 192.87051 * 15 14 13 40 40 H 1.09001 * 109.67539 * 162.54961 * 16 15 14 41 41 H 1.09004 * 109.67691 * 42.01919 * 16 15 14 42 42 H 1.08000 * 126.51968 * 359.96290 * 21 20 18 43 43 H 1.08997 * 112.85084 * 170.35320 * 24 23 22 44 44 H 1.09000 * 113.61604 * 334.56578 * 25 24 23 45 45 H 1.08997 * 113.61333 * 105.47660 * 25 24 23 46 46 H 1.08994 * 113.53556 * 270.81487 * 26 25 24 47 47 H 1.09000 * 113.66773 * 139.93217 * 26 25 24 48 48 H 1.08995 * 113.61259 * 254.52639 * 27 24 23 49 49 H 1.08995 * 113.61924 * 25.35167 * 27 24 23 50 50 H 1.08995 * 109.53208 * 231.25117 * 29 17 16 51 51 H 1.09001 * 109.53280 * 351.47687 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.9700 -3.5508 0.5869 12 6 1.1772 -4.7588 0.6120 13 6 2.0522 -5.9389 1.0189 14 6 1.7326 -7.1760 0.1601 15 6 1.6083 -6.7673 -1.3077 16 6 3.0016 -6.4534 -1.8686 17 7 3.3965 -5.1337 -1.4052 18 6 4.6486 -4.9155 -0.9568 19 8 4.9399 -3.8421 -0.4649 20 6 5.6651 -5.9780 -1.0624 21 6 6.9210 -5.9505 -0.5389 22 8 7.5074 -7.1127 -0.8672 23 6 6.6320 -7.8383 -1.5771 24 6 6.8913 -9.2117 -2.1408 25 6 7.7003 -10.1207 -1.2006 26 6 8.4488 -10.6138 -2.4523 27 6 8.0906 -9.2666 -3.1019 28 7 5.5262 -7.1685 -1.7067 29 6 2.4137 -4.0413 -1.4253 30 1 -0.4850 0.8400 0.0004 31 1 0.3555 -2.3880 -0.0005 32 1 0.4424 -5.0874 -0.1229 33 1 0.6635 -4.3674 1.4901 34 1 1.8727 -6.1740 2.0679 35 1 3.1005 -5.6710 0.8861 36 1 0.7933 -7.6165 0.4946 37 1 2.5340 -7.9071 0.2664 38 1 0.9768 -5.8825 -1.3866 39 1 1.1631 -7.5839 -1.8761 40 1 2.9699 -6.4654 -2.9581 41 1 3.7161 -7.1961 -1.5136 42 1 7.3619 -5.1466 0.0318 43 1 5.9921 -9.6832 -2.5372 44 1 8.3323 -9.5735 -0.5012 45 1 7.1012 -10.8922 -0.7169 46 1 7.9758 -11.4699 -2.9333 47 1 9.5186 -10.7524 -2.2961 48 1 7.8060 -9.3496 -4.1507 49 1 8.8288 -8.4847 -2.9241 50 1 2.8403 -3.1766 -1.9336 51 1 1.5162 -4.3680 -1.9507 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088411265.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:12 Heat of formation + Delta-G solvation = 37.392760 kcal Electronic energy + Delta-G solvation = -32059.340093 eV Core-core repulsion = 27962.114785 eV Total energy + Delta-G solvation = -4097.225308 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.63524 -40.09999 -39.05483 -37.37998 -35.34285 -34.58363 -33.72928 -32.00042 -30.85780 -29.55911 -27.63902 -26.46722 -26.18299 -26.14572 -24.40106 -23.26393 -22.33315 -22.00446 -20.82183 -20.17818 -19.65459 -18.82588 -17.46217 -17.03113 -16.95911 -16.76878 -16.09375 -15.80147 -15.57973 -15.55319 -14.64960 -14.37996 -14.04048 -13.80410 -13.58787 -13.53765 -13.29976 -13.05106 -12.90365 -12.86074 -12.74305 -12.59272 -12.21924 -11.89741 -11.49847 -11.45450 -11.41993 -11.03352 -11.00716 -10.95663 -10.83473 -10.72896 -10.64443 -10.47982 -10.27283 -10.13675 -10.03030 -9.86848 -9.51405 -9.37825 -9.12473 -8.91182 -8.11737 -6.85077 -5.66796 -2.94810 1.03118 1.87996 2.36564 3.21099 3.44424 3.51492 3.57456 3.61603 3.64979 4.01464 4.10426 4.32221 4.38131 4.66855 4.72575 4.74604 4.94118 5.10437 5.13613 5.18716 5.20450 5.22518 5.38883 5.41783 5.42846 5.43995 5.47775 5.52219 5.56794 5.58484 5.70563 5.78178 5.86994 5.89645 5.92066 5.98581 6.06973 6.12545 6.22394 6.26316 6.37046 6.46966 6.54599 6.61797 6.76266 6.86032 6.96192 7.28717 7.33622 7.78866 7.91001 8.44626 8.53133 9.63941 10.19584 10.55226 11.56040 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016621 B = 0.002815 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.238292 B = 9944.759571 C =11037.495999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.017 4.017 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.229 4.229 8 H 0.075 0.925 9 N -0.720 5.720 10 C 0.163 3.837 11 H 0.066 0.934 12 C -0.130 4.130 13 C -0.115 4.115 14 C -0.111 4.111 15 C -0.151 4.151 16 C 0.094 3.906 17 N -0.583 5.583 18 C 0.588 3.412 19 O -0.522 6.522 20 C -0.059 4.059 21 C 0.005 3.995 22 O -0.195 6.195 23 C 0.200 3.800 24 C -0.019 4.019 25 C -0.133 4.133 26 C -0.139 4.139 27 C -0.131 4.131 28 N -0.453 5.453 29 C 0.099 3.901 30 H 0.253 0.747 31 H 0.383 0.617 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.051 0.949 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.086 0.914 39 H 0.066 0.934 40 H 0.055 0.945 41 H 0.118 0.882 42 H 0.231 0.769 43 H 0.132 0.868 44 H 0.089 0.911 45 H 0.079 0.921 46 H 0.087 0.913 47 H 0.075 0.925 48 H 0.079 0.921 49 H 0.087 0.913 50 H 0.074 0.926 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.060 -26.133 -4.736 30.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.212 4.212 3 Si 0.735 3.265 4 H -0.204 1.204 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.360 4.360 8 H 0.093 0.907 9 N -0.360 5.360 10 C 0.052 3.948 11 H 0.084 0.916 12 C -0.168 4.168 13 C -0.153 4.153 14 C -0.149 4.149 15 C -0.189 4.189 16 C -0.029 4.029 17 N -0.315 5.315 18 C 0.374 3.626 19 O -0.399 6.399 20 C -0.179 4.179 21 C -0.069 4.069 22 O -0.081 6.081 23 C -0.008 4.008 24 C -0.038 4.038 25 C -0.171 4.171 26 C -0.177 4.177 27 C -0.169 4.169 28 N -0.183 5.183 29 C -0.025 4.025 30 H 0.062 0.938 31 H 0.216 0.784 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.104 0.896 39 H 0.085 0.915 40 H 0.073 0.927 41 H 0.136 0.864 42 H 0.247 0.753 43 H 0.150 0.850 44 H 0.108 0.892 45 H 0.098 0.902 46 H 0.105 0.895 47 H 0.094 0.906 48 H 0.098 0.902 49 H 0.106 0.894 50 H 0.093 0.907 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 13.799 -25.598 -4.791 29.473 hybrid contribution 0.517 1.322 0.240 1.440 sum 14.316 -24.276 -4.551 28.548 Atomic orbital electron populations 1.69673 1.05049 1.25338 1.58527 1.24727 0.95489 0.97607 1.03383 0.86137 0.79079 0.84229 0.77016 1.20422 1.22032 1.22007 1.19413 0.91349 0.83857 1.41384 0.90688 1.42415 1.05668 0.99775 1.88159 1.20634 0.95354 0.85930 0.92899 0.91576 1.22091 0.98398 0.95312 1.00994 1.21645 1.00579 0.94781 0.98328 1.21690 1.00746 0.97475 0.94954 1.22349 0.97693 1.02534 0.96280 1.22144 0.97169 0.85234 0.98399 1.47697 1.10355 1.11623 1.61790 1.16797 0.81330 0.85236 0.79229 1.90897 1.80036 1.24737 1.44194 1.22028 0.96394 0.95227 1.04289 1.25297 0.92973 0.87682 1.00903 1.84315 1.42894 1.25411 1.55512 1.26188 0.83400 0.96564 0.94680 1.21294 1.00352 0.84535 0.97641 1.23057 0.98509 0.98630 0.96905 1.22852 1.01230 0.97105 0.96496 1.23017 0.96364 0.98424 0.99085 1.70847 1.22933 1.04136 1.20424 1.22570 0.90370 0.87833 1.01735 0.93757 0.78353 0.91871 0.91850 0.93024 0.92219 0.92462 0.92690 0.89606 0.91532 0.92656 0.86433 0.75326 0.84979 0.89219 0.90240 0.89469 0.90628 0.90207 0.89410 0.90723 0.90714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.01 13.06 55.49 0.72 -28.28 16 2 C -0.02 -0.50 5.50 -17.43 -0.10 -0.60 16 3 Si 0.90 23.54 29.55 -169.99 -5.02 18.51 16 4 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 5 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 6 H -0.29 -7.62 7.11 56.52 0.40 -7.21 16 7 C -0.23 -6.68 9.90 -15.06 -0.15 -6.83 16 8 H 0.08 2.24 7.83 -52.49 -0.41 1.83 16 9 N -0.72 -18.75 5.13 -53.62 -0.27 -19.02 16 10 C 0.16 3.47 2.38 -68.13 -0.16 3.31 16 11 H 0.07 1.59 5.92 -51.93 -0.31 1.28 16 12 C -0.13 -2.29 4.97 -26.61 -0.13 -2.42 16 13 C -0.12 -1.75 5.40 -26.52 -0.14 -1.89 16 14 C -0.11 -1.38 5.75 -26.30 -0.15 -1.53 16 15 C -0.15 -1.86 5.45 -26.57 -0.14 -2.01 16 16 C 0.09 1.26 5.44 -4.44 -0.02 1.24 16 17 N -0.58 -9.69 1.70 -175.95 -0.30 -9.98 16 18 C 0.59 10.44 6.23 -12.52 -0.08 10.36 16 19 O -0.52 -11.16 15.42 5.26 0.08 -11.08 16 20 C -0.06 -0.86 6.61 -83.02 -0.55 -1.41 16 21 C 0.00 0.06 11.95 29.96 0.36 0.41 16 22 O -0.20 -2.07 10.43 6.53 0.07 -2.01 16 23 C 0.20 2.05 7.32 -13.08 -0.10 1.95 16 24 C -0.02 -0.13 4.29 -90.96 -0.39 -0.51 16 25 C -0.13 -0.68 7.64 -25.83 -0.20 -0.88 16 26 C -0.14 -0.56 8.09 -25.82 -0.21 -0.76 16 27 C -0.13 -0.70 7.63 -25.91 -0.20 -0.90 16 28 N -0.45 -5.71 7.91 -7.65 -0.06 -5.77 16 29 C 0.10 1.91 4.75 -4.40 -0.02 1.89 16 30 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 31 H 0.38 10.40 7.80 -40.82 -0.32 10.08 16 32 H 0.06 1.04 5.47 -51.93 -0.28 0.75 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 1.01 5.38 -51.93 -0.28 0.73 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.05 0.64 7.87 -51.93 -0.41 0.24 16 38 H 0.09 1.19 3.35 -51.93 -0.17 1.02 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.12 1.54 4.32 -51.93 -0.22 1.32 16 42 H 0.23 2.20 8.06 -52.49 -0.42 1.78 16 43 H 0.13 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.09 0.52 7.85 -51.93 -0.41 0.11 16 45 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 47 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 48 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.09 0.53 8.09 -51.93 -0.42 0.11 16 50 H 0.07 1.68 8.10 -51.93 -0.42 1.26 16 51 H 0.07 1.33 6.06 -51.93 -0.31 1.01 16 LS Contribution 389.62 15.07 5.87 5.87 Total: -1.00 -33.97 389.62 -9.05 -43.02 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -7.76 Total: 9.32 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: -2.38 Total: -0.58 kcal Atomic # 7 Polarization: -63.15 SS G_CDS: 0.09 Total: -63.06 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: 0.15 Total: -13.08 kcal Atomic # 14 Polarization: 23.54 SS G_CDS: -5.02 Total: 18.51 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.97 -9.05 -43.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088411265.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.414 kcal (2) G-P(sol) polarization free energy of solvation -33.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds