Wall clock time and date at job start Wed Apr 1 2020 04:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86803 * 120.00190 * 2 1 4 4 H 1.48495 * 109.47430 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47150 * 300.00417 * 3 2 1 6 6 H 1.48502 * 109.46892 * 60.00257 * 3 2 1 7 7 C 1.38813 * 120.00241 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00167 * 179.97438 * 7 2 1 9 9 N 1.36943 * 119.99602 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00023 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.51859 * 34.87267 * 10 9 7 12 12 C 1.53792 * 109.52419 * 155.00064 * 10 9 7 13 13 C 1.52441 * 109.40666 * 197.80555 * 12 10 9 14 14 C 1.53954 * 110.73217 * 246.27733 * 13 12 10 15 15 C 1.52873 * 109.73443 * 44.35934 * 14 13 12 16 16 C 1.53444 * 109.38378 * 72.89609 * 15 14 13 17 17 N 1.45329 * 108.41947 * 282.28132 * 16 15 14 18 18 C 1.34775 * 120.36635 * 136.65674 * 17 16 15 19 19 O 1.21615 * 119.99964 * 186.28075 * 18 17 16 20 20 C 1.47417 * 120.00286 * 6.27717 * 18 17 16 21 21 C 1.36092 * 126.45251 * 186.91919 * 20 18 17 22 22 O 1.34254 * 106.94992 * 179.97438 * 21 20 18 23 23 C 1.34044 * 108.22796 * 0.02562 * 22 21 20 24 24 C 1.50708 * 125.37962 * 180.02562 * 23 22 21 25 25 C 1.53778 * 113.61201 * 39.15523 * 24 23 22 26 26 C 1.53961 * 87.01885 * 220.05087 * 25 24 23 27 27 C 1.53784 * 113.60828 * 301.54846 * 24 23 22 28 28 N 1.29931 * 109.24594 * 0.25900 * 23 22 21 29 29 C 1.46966 * 119.26809 * 316.93142 * 17 16 15 30 30 H 0.97000 * 120.00085 * 359.97438 * 1 2 3 31 31 H 0.96999 * 119.99923 * 0.02562 * 9 7 2 32 32 H 1.09005 * 109.48297 * 77.82196 * 12 10 9 33 33 H 1.09000 * 109.48520 * 317.78392 * 12 10 9 34 34 H 1.08994 * 109.23091 * 125.95196 * 13 12 10 35 35 H 1.09003 * 109.22328 * 6.59399 * 13 12 10 36 36 H 1.09000 * 109.42335 * 284.28021 * 14 13 12 37 37 H 1.09004 * 109.38743 * 164.41643 * 14 13 12 38 38 H 1.08999 * 109.48790 * 312.92538 * 15 14 13 39 39 H 1.08996 * 109.49135 * 192.87051 * 15 14 13 40 40 H 1.09001 * 109.67539 * 162.54961 * 16 15 14 41 41 H 1.09004 * 109.67691 * 42.01919 * 16 15 14 42 42 H 1.08000 * 126.51968 * 359.96290 * 21 20 18 43 43 H 1.08997 * 112.85084 * 170.35320 * 24 23 22 44 44 H 1.09000 * 113.61604 * 334.56578 * 25 24 23 45 45 H 1.08997 * 113.61333 * 105.47660 * 25 24 23 46 46 H 1.08994 * 113.53556 * 270.81487 * 26 25 24 47 47 H 1.09000 * 113.66773 * 139.93217 * 26 25 24 48 48 H 1.08995 * 113.61259 * 254.52639 * 27 24 23 49 49 H 1.08995 * 113.61924 * 25.35167 * 27 24 23 50 50 H 1.08995 * 109.53208 * 231.25117 * 29 17 16 51 51 H 1.09001 * 109.53280 * 351.47687 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.9700 -3.5508 0.5869 12 6 1.1772 -4.7588 0.6120 13 6 2.0522 -5.9389 1.0189 14 6 1.7326 -7.1760 0.1601 15 6 1.6083 -6.7673 -1.3077 16 6 3.0016 -6.4534 -1.8686 17 7 3.3965 -5.1337 -1.4052 18 6 4.6486 -4.9155 -0.9568 19 8 4.9399 -3.8421 -0.4649 20 6 5.6651 -5.9780 -1.0624 21 6 6.9210 -5.9505 -0.5389 22 8 7.5074 -7.1127 -0.8672 23 6 6.6320 -7.8383 -1.5771 24 6 6.8913 -9.2117 -2.1408 25 6 7.7003 -10.1207 -1.2006 26 6 8.4488 -10.6138 -2.4523 27 6 8.0906 -9.2666 -3.1019 28 7 5.5262 -7.1685 -1.7067 29 6 2.4137 -4.0413 -1.4253 30 1 -0.4850 0.8400 0.0004 31 1 0.3555 -2.3880 -0.0005 32 1 0.4424 -5.0874 -0.1229 33 1 0.6635 -4.3674 1.4901 34 1 1.8727 -6.1740 2.0679 35 1 3.1005 -5.6710 0.8861 36 1 0.7933 -7.6165 0.4946 37 1 2.5340 -7.9071 0.2664 38 1 0.9768 -5.8825 -1.3866 39 1 1.1631 -7.5839 -1.8761 40 1 2.9699 -6.4654 -2.9581 41 1 3.7161 -7.1961 -1.5136 42 1 7.3619 -5.1466 0.0318 43 1 5.9921 -9.6832 -2.5372 44 1 8.3323 -9.5735 -0.5012 45 1 7.1012 -10.8922 -0.7169 46 1 7.9758 -11.4699 -2.9333 47 1 9.5186 -10.7524 -2.2961 48 1 7.8060 -9.3496 -4.1507 49 1 8.8288 -8.4847 -2.9241 50 1 2.8403 -3.1766 -1.9336 51 1 1.5162 -4.3680 -1.9507 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088411265.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:11 Heat of formation + Delta-G solvation = 15.681026 kcal Electronic energy + Delta-G solvation = -32060.281584 eV Core-core repulsion = 27962.114785 eV Total energy + Delta-G solvation = -4098.166800 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.55934 -41.47468 -39.50439 -38.79665 -36.81057 -35.93319 -35.04697 -33.91205 -31.78217 -31.30599 -29.14661 -27.50272 -27.09910 -26.55873 -25.99952 -24.89477 -23.53946 -22.94294 -22.16039 -21.22904 -20.74004 -19.72719 -19.12360 -18.57965 -17.92133 -17.83204 -17.30642 -17.05304 -16.58618 -16.41891 -16.11913 -15.78352 -15.52097 -15.32203 -15.16548 -14.78239 -14.34368 -14.20965 -14.09141 -13.73403 -13.61304 -13.50949 -13.31720 -13.22255 -13.13965 -12.84489 -12.82510 -12.36380 -12.19137 -12.09003 -12.01166 -11.88695 -11.80483 -11.65255 -11.48845 -11.43293 -11.38703 -11.36064 -11.30483 -11.04381 -10.71837 -10.09105 -9.60974 -8.95333 -7.97102 -5.25133 0.03230 0.90301 1.42030 1.42402 1.50355 1.54321 1.93533 2.18030 2.53923 2.75700 3.35319 3.50183 3.57419 3.66539 3.72978 3.82189 3.92894 3.94860 4.00496 4.05487 4.13321 4.16762 4.25943 4.42461 4.43995 4.54269 4.54546 4.65060 4.71636 4.75666 4.77003 4.82196 4.83983 4.90665 4.93849 4.99120 5.08258 5.09193 5.14350 5.15791 5.23540 5.24317 5.30059 5.38083 5.44413 5.51775 5.53762 5.58439 5.73525 6.25675 6.33336 6.53245 7.08234 7.32562 8.05154 8.32335 9.25939 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016621 B = 0.002815 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.238292 B = 9944.759571 C =11037.495999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.071 4.071 3 Si 0.966 3.034 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.232 4.232 8 H 0.059 0.941 9 N -0.730 5.730 10 C 0.165 3.835 11 H 0.034 0.966 12 C -0.119 4.119 13 C -0.111 4.111 14 C -0.103 4.103 15 C -0.147 4.147 16 C 0.092 3.908 17 N -0.579 5.579 18 C 0.584 3.416 19 O -0.573 6.573 20 C -0.088 4.088 21 C 0.019 3.981 22 O -0.189 6.189 23 C 0.213 3.787 24 C -0.025 4.025 25 C -0.131 4.131 26 C -0.128 4.128 27 C -0.132 4.132 28 N -0.468 5.468 29 C 0.115 3.885 30 H 0.252 0.748 31 H 0.376 0.624 32 H 0.081 0.919 33 H 0.047 0.953 34 H 0.060 0.940 35 H 0.037 0.963 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.099 0.901 40 H 0.063 0.937 41 H 0.128 0.872 42 H 0.246 0.754 43 H 0.147 0.853 44 H 0.081 0.919 45 H 0.090 0.910 46 H 0.103 0.897 47 H 0.080 0.920 48 H 0.087 0.913 49 H 0.077 0.923 50 H 0.033 0.967 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.803 -29.463 -5.473 33.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.263 4.263 3 Si 0.796 3.204 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.215 1.215 7 C -0.364 4.364 8 H 0.077 0.923 9 N -0.370 5.370 10 C 0.056 3.944 11 H 0.052 0.948 12 C -0.157 4.157 13 C -0.149 4.149 14 C -0.141 4.141 15 C -0.185 4.185 16 C -0.030 4.030 17 N -0.309 5.309 18 C 0.372 3.628 19 O -0.453 6.453 20 C -0.206 4.206 21 C -0.055 4.055 22 O -0.075 6.075 23 C 0.004 3.996 24 C -0.044 4.044 25 C -0.169 4.169 26 C -0.165 4.165 27 C -0.170 4.170 28 N -0.197 5.197 29 C -0.010 4.010 30 H 0.061 0.939 31 H 0.209 0.791 32 H 0.099 0.901 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.056 0.944 36 H 0.096 0.904 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.118 0.882 40 H 0.081 0.919 41 H 0.145 0.855 42 H 0.262 0.738 43 H 0.165 0.835 44 H 0.099 0.901 45 H 0.109 0.891 46 H 0.121 0.879 47 H 0.099 0.901 48 H 0.106 0.894 49 H 0.096 0.904 50 H 0.052 0.948 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 14.550 -28.997 -5.548 32.914 hybrid contribution 0.387 2.238 0.456 2.317 sum 14.937 -26.759 -5.092 31.066 Atomic orbital electron populations 1.69796 1.06153 1.25927 1.59721 1.25448 0.96425 1.00595 1.03857 0.85172 0.77864 0.80307 0.77072 1.20248 1.21466 1.21479 1.19492 0.90778 0.85449 1.40695 0.92322 1.42507 1.05375 1.00657 1.88448 1.20695 0.94375 0.85430 0.93945 0.94818 1.21979 0.98346 0.94894 1.00477 1.21591 0.98552 0.95083 0.99700 1.21663 1.02242 0.95988 0.94176 1.22335 0.96434 1.02951 0.96732 1.22392 0.98287 0.83371 0.98927 1.47679 1.09643 1.12155 1.61454 1.17258 0.82027 0.85392 0.78153 1.90860 1.80961 1.26996 1.46475 1.21595 0.96465 0.95666 1.06908 1.25591 0.92153 0.88120 0.99630 1.84366 1.42759 1.24950 1.55471 1.27049 0.82421 0.97153 0.92962 1.21713 1.01595 0.82599 0.98534 1.23067 0.98342 0.98390 0.97097 1.22839 1.01634 0.96707 0.95369 1.23039 0.95480 0.99109 0.99363 1.70754 1.24205 1.03629 1.21156 1.22058 0.91417 0.87781 0.99747 0.93907 0.79134 0.90057 0.93402 0.92104 0.94385 0.90429 0.91359 0.91259 0.88222 0.91864 0.85509 0.73782 0.83496 0.90065 0.89089 0.87903 0.90089 0.89433 0.90395 0.94799 0.88750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.07 13.06 21.65 0.28 -60.79 16 2 C -0.07 -4.33 5.50 84.86 0.47 -3.87 16 3 Si 0.97 49.66 29.55 68.60 2.03 51.68 16 4 H -0.28 -14.01 7.11 99.48 0.71 -13.31 16 5 H -0.29 -14.47 7.11 99.48 0.71 -13.76 16 6 H -0.29 -14.49 7.11 99.48 0.71 -13.79 16 7 C -0.23 -14.14 9.90 84.03 0.83 -13.31 16 8 H 0.06 3.71 7.83 -2.91 -0.02 3.69 16 9 N -0.73 -39.77 5.13 -323.54 -1.66 -41.43 16 10 C 0.16 7.37 2.38 44.86 0.11 7.47 16 11 H 0.03 1.74 5.92 -2.39 -0.01 1.72 16 12 C -0.12 -4.23 4.97 30.68 0.15 -4.08 16 13 C -0.11 -3.28 5.40 30.73 0.17 -3.12 16 14 C -0.10 -2.25 5.75 30.87 0.18 -2.07 16 15 C -0.15 -3.21 5.45 30.70 0.17 -3.04 16 16 C 0.09 2.33 5.44 86.75 0.47 2.80 16 17 N -0.58 -19.59 1.70 -828.85 -1.41 -20.99 16 18 C 0.58 21.52 6.23 86.66 0.54 22.06 16 19 O -0.57 -26.14 15.42 -4.08 -0.06 -26.21 16 20 C -0.09 -2.53 6.61 40.41 0.27 -2.26 16 21 C 0.02 0.45 11.95 67.32 0.80 1.25 16 22 O -0.19 -3.76 10.43 0.47 0.00 -3.76 16 23 C 0.21 3.97 7.32 88.39 0.65 4.61 16 24 C -0.03 -0.26 4.29 -11.01 -0.05 -0.31 16 25 C -0.13 -0.96 7.64 31.18 0.24 -0.72 16 26 C -0.13 -0.61 8.09 31.18 0.25 -0.36 16 27 C -0.13 -1.07 7.63 31.12 0.24 -0.84 16 28 N -0.47 -11.14 7.91 -293.04 -2.32 -13.46 16 29 C 0.11 4.61 4.75 85.90 0.41 5.02 16 30 H 0.25 15.35 8.31 -92.71 -0.77 14.58 16 31 H 0.38 21.23 7.80 -92.71 -0.72 20.51 16 32 H 0.08 2.59 5.47 -2.38 -0.01 2.58 16 33 H 0.05 1.83 8.14 -2.39 -0.02 1.82 16 34 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.04 1.30 5.38 -2.39 -0.01 1.28 16 36 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.07 1.36 7.87 -2.39 -0.02 1.34 16 38 H 0.07 1.77 3.35 -2.39 -0.01 1.77 16 39 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.13 3.07 4.32 -2.40 -0.01 3.06 16 42 H 0.25 4.71 8.06 -2.91 -0.02 4.68 16 43 H 0.15 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.08 0.76 7.85 -2.39 -0.02 0.74 16 45 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 46 H 0.10 0.21 8.14 -2.39 -0.02 0.20 16 47 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 48 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 49 H 0.08 0.80 8.09 -2.39 -0.02 0.79 16 50 H 0.03 1.62 8.10 -2.39 -0.02 1.60 16 51 H 0.09 3.38 6.06 -2.39 -0.01 3.37 16 Total: -1.00 -77.23 389.62 2.99 -74.24 By element: Atomic # 1 Polarization: 31.24 SS G_CDS: 0.24 Total: 31.47 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: 5.89 Total: 9.23 kcal Atomic # 7 Polarization: -131.57 SS G_CDS: -5.10 Total: -136.67 kcal Atomic # 8 Polarization: -29.90 SS G_CDS: -0.06 Total: -29.96 kcal Atomic # 14 Polarization: 49.66 SS G_CDS: 2.03 Total: 51.68 kcal Total: -77.23 2.99 -74.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088411265.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.921 kcal (2) G-P(sol) polarization free energy of solvation -77.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds