Wall clock time and date at job start Wed Apr 1 2020 05:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.46148 * 2 1 4 4 C 1.53139 * 109.46316 * 239.99836 * 2 1 3 5 5 C 1.53426 * 109.71816 * 170.12996 * 4 2 1 6 6 C 1.50606 * 108.31581 * 50.03146 * 5 4 2 7 7 O 1.33187 * 129.60421 * 163.27451 * 6 5 4 8 8 N 1.21438 * 111.56714 * 180.12585 * 7 6 5 9 9 C 1.31495 * 111.52202 * 359.93780 * 8 7 6 10 10 C 1.48337 * 127.14905 * 179.97438 * 9 8 7 11 11 O 1.21496 * 119.99532 * 179.97438 * 10 9 8 12 12 N 1.34771 * 119.99915 * 359.97438 * 10 9 8 13 13 C 1.46507 * 119.99808 * 179.97438 * 12 10 9 14 14 C 1.52992 * 109.47257 * 180.02562 * 13 12 10 15 15 C 1.53779 * 113.61798 * 274.14121 * 14 13 12 16 16 C 1.53957 * 87.02308 * 220.04584 * 15 14 13 17 17 N 1.46495 * 113.53566 * 270.81046 * 16 15 14 18 18 C 1.36930 * 119.99869 * 252.48796 * 17 16 15 19 19 H 1.08004 * 120.00248 * 0.02562 * 18 17 16 20 20 C 1.38814 * 120.00079 * 180.02562 * 18 17 16 21 21 N 1.31616 * 120.00090 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00080 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.47260 * 89.99747 * 22 20 18 24 24 H 1.48497 * 109.47293 * 209.99449 * 22 20 18 25 25 H 1.48492 * 109.47247 * 329.99868 * 22 20 18 26 26 C 1.53779 * 87.10869 * 25.36034 * 16 15 14 27 27 C 1.35376 * 123.75865 * 343.30171 * 6 5 4 28 28 C 1.50063 * 124.93782 * 359.74316 * 27 6 5 29 29 H 1.08999 * 109.47167 * 300.01992 * 1 2 3 30 30 H 1.09003 * 109.46807 * 60.02466 * 1 2 3 31 31 H 1.09004 * 109.47034 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47314 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47023 * 299.98279 * 3 2 1 34 34 H 1.09006 * 109.46749 * 59.97722 * 3 2 1 35 35 H 1.08997 * 109.41838 * 50.06551 * 4 2 1 36 36 H 1.08991 * 109.44657 * 290.21324 * 4 2 1 37 37 H 1.09001 * 109.69965 * 290.32906 * 5 4 2 38 38 H 1.09006 * 109.69534 * 169.73657 * 5 4 2 39 39 H 0.97000 * 120.00759 * 0.02562 * 12 10 9 40 40 H 1.08998 * 109.47182 * 300.00715 * 13 12 10 41 41 H 1.09003 * 109.46895 * 59.99982 * 13 12 10 42 42 H 1.09008 * 112.85110 * 45.33683 * 14 13 12 43 43 H 1.09004 * 113.61414 * 334.56390 * 15 14 13 44 44 H 1.09000 * 113.62069 * 105.46641 * 15 14 13 45 45 H 1.08999 * 113.74167 * 139.93541 * 16 15 14 46 46 H 0.97001 * 120.00126 * 72.50230 * 17 16 15 47 47 H 0.96998 * 120.00568 * 180.02562 * 21 20 18 48 48 H 1.08994 * 113.61940 * 220.08975 * 26 16 15 49 49 H 1.09003 * 113.61817 * 89.18541 * 26 16 15 50 50 H 1.09007 * 109.70911 * 103.58313 * 28 27 6 51 51 H 1.08992 * 109.71496 * 224.17283 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0397 1.4426 0.0000 4 6 2.0402 -0.7220 -1.2504 5 6 3.5543 -0.5146 -1.3863 6 6 4.1982 -0.8497 -0.0667 7 8 5.4744 -1.1070 0.2142 8 7 5.6331 -1.3414 1.3951 9 6 4.4991 -1.2723 2.0573 10 6 4.2947 -1.4955 3.5094 11 8 3.1825 -1.3971 3.9884 12 7 5.3427 -1.8073 4.2973 13 6 5.1408 -2.0272 5.7317 14 6 6.4805 -2.3635 6.3896 15 6 6.8417 -3.8568 6.3233 16 6 7.3659 -3.7116 7.7636 17 7 8.7764 -3.3228 7.8364 18 6 9.7189 -4.2359 8.2274 19 1 9.4225 -5.2428 8.4817 20 6 11.0554 -3.8674 8.2970 21 7 11.4168 -2.6404 7.9866 22 14 12.3414 -5.1132 8.8297 23 1 12.8585 -5.8316 7.6372 24 1 13.4601 -4.4108 9.5080 25 1 11.7279 -6.0878 9.7671 26 6 6.3927 -2.5307 7.9158 27 6 3.5182 -0.9426 1.1001 28 6 2.0416 -0.7234 1.2541 29 1 -0.3633 0.5141 0.8898 30 1 -0.3633 0.5135 -0.8902 31 1 -0.3633 -1.0277 0.0005 32 1 3.1296 1.4428 0.0005 33 1 1.6765 1.9562 -0.8901 34 1 1.6759 1.9564 0.8898 35 1 1.5388 -0.3201 -2.1308 36 1 1.8263 -1.7874 -1.1669 37 1 3.7613 0.5245 -1.6426 38 1 3.9466 -1.1704 -2.1636 39 1 6.2307 -1.8855 3.9150 40 1 4.7311 -1.1239 6.1836 41 1 4.4459 -2.8541 5.8782 42 1 7.2872 -1.7045 6.0683 43 1 5.9750 -4.5123 6.2381 44 1 7.6201 -4.0860 5.5955 45 1 7.1268 -4.5597 8.4052 46 1 9.0427 -2.4185 7.6079 47 1 12.3507 -2.3830 8.0348 48 1 6.8090 -1.6906 8.4717 49 1 5.4029 -2.8228 8.2667 50 1 1.5361 -1.6837 1.3565 51 1 1.8507 -0.1117 2.1357 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091161071.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:05 Heat of formation + Delta-G solvation = 37.600017 kcal Electronic energy + Delta-G solvation = -30233.246148 eV Core-core repulsion = 26136.029827 eV Total energy + Delta-G solvation = -4097.216321 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -45.35407 -39.83860 -39.40422 -38.47367 -34.78001 -34.24154 -33.30282 -33.13814 -30.79831 -30.15085 -27.98572 -27.73927 -27.36298 -25.08227 -24.67859 -24.05759 -23.42887 -22.07682 -21.67275 -20.56622 -18.93017 -18.31627 -18.08908 -17.74223 -17.25277 -16.66781 -15.98980 -15.55549 -15.32581 -15.02009 -14.89064 -14.80962 -14.37208 -14.16133 -13.80091 -13.75357 -13.54800 -13.47916 -13.30558 -12.89563 -12.55758 -12.42788 -12.30772 -12.19899 -12.09146 -11.93700 -11.69348 -11.43605 -11.14425 -11.08216 -11.05394 -10.86683 -10.83350 -10.53082 -10.46539 -10.39047 -10.17283 -9.89664 -9.69839 -9.51259 -9.38697 -9.09692 -8.89099 -7.00730 -5.80956 -3.10160 0.89751 1.41700 2.57166 2.89656 3.03808 3.41865 3.47098 3.48764 3.76144 4.10057 4.14820 4.25376 4.51621 4.55414 4.56107 4.70451 4.79477 4.86965 5.01226 5.02670 5.12263 5.14547 5.22100 5.24401 5.29585 5.32132 5.36288 5.40467 5.44555 5.49805 5.56223 5.59231 5.65262 5.66584 5.70426 5.82203 5.87300 5.91970 5.93445 5.98330 6.07616 6.19250 6.29998 6.36055 6.56714 6.74063 6.87421 7.03275 7.31336 7.68586 7.77211 7.99666 8.38007 9.48685 10.06131 10.40296 11.41422 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021405 B = 0.001854 C = 0.001757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.817334 B =15101.391563 C =15936.659054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.069 4.069 3 C -0.146 4.146 4 C -0.108 4.108 5 C -0.036 4.036 6 C -0.040 4.040 7 O 0.129 5.871 8 N -0.333 5.333 9 C -0.017 4.017 10 C 0.596 3.404 11 O -0.526 6.526 12 N -0.706 5.706 13 C 0.131 3.869 14 C -0.121 4.121 15 C -0.169 4.169 16 C 0.168 3.832 17 N -0.706 5.706 18 C -0.243 4.243 19 H 0.072 0.928 20 C -0.013 4.013 21 N -0.932 5.932 22 Si 0.909 3.091 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.281 1.281 26 C -0.146 4.146 27 C -0.149 4.149 28 C -0.033 4.033 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.409 0.591 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.094 0.906 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.063 0.937 46 H 0.385 0.615 47 H 0.256 0.744 48 H 0.069 0.931 49 H 0.078 0.922 50 H 0.083 0.917 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.973 7.158 -21.186 32.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.069 4.069 3 C -0.203 4.203 4 C -0.146 4.146 5 C -0.074 4.074 6 C -0.104 4.104 7 O 0.055 5.945 8 N -0.035 5.035 9 C -0.175 4.175 10 C 0.379 3.621 11 O -0.401 6.401 12 N -0.357 5.357 13 C 0.008 3.992 14 C -0.140 4.140 15 C -0.210 4.210 16 C 0.056 3.944 17 N -0.344 5.344 18 C -0.374 4.374 19 H 0.090 0.910 20 C -0.209 4.209 21 N -0.580 5.580 22 Si 0.740 3.260 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 C -0.186 4.186 27 C -0.154 4.154 28 C -0.071 4.071 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.101 0.899 36 H 0.091 0.909 37 H 0.115 0.885 38 H 0.112 0.888 39 H 0.244 0.756 40 H 0.086 0.914 41 H 0.089 0.911 42 H 0.112 0.888 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.081 0.919 46 H 0.219 0.781 47 H 0.066 0.934 48 H 0.088 0.912 49 H 0.096 0.904 50 H 0.102 0.898 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -22.373 6.798 -20.278 30.951 hybrid contribution 0.733 -0.246 -0.039 0.774 sum -21.640 6.552 -20.317 30.398 Atomic orbital electron populations 1.21835 0.93557 1.02154 1.02192 1.20738 0.96069 0.95748 0.94334 1.21970 1.01363 0.94890 1.02089 1.21734 0.92945 1.01576 0.98301 1.20295 0.94419 1.03322 0.89340 1.24120 0.83454 1.03818 0.98993 1.84699 1.26932 1.62654 1.20182 1.74621 1.22497 1.16344 0.90060 1.23063 0.90243 1.07064 0.97120 1.16858 0.84983 0.77487 0.82730 1.90774 1.23606 1.51724 1.73994 1.45968 1.10828 1.69302 1.09632 1.21591 0.98323 1.01292 0.77976 1.22728 0.95352 0.98886 0.96999 1.23931 1.00455 0.93831 1.02826 1.21083 0.85243 0.94808 0.93302 1.42172 0.99898 1.12796 1.79535 1.19289 0.87445 0.93082 1.37567 0.90978 1.24773 0.97233 0.96622 1.02280 1.69658 1.16456 1.17095 1.54801 0.86161 0.81468 0.80247 0.78134 1.21686 1.21748 1.20694 1.23439 1.00315 1.01047 0.93810 1.20606 0.98604 1.05604 0.90580 1.20089 0.87203 1.01476 0.98297 0.92166 0.92302 0.92349 0.92438 0.92292 0.92333 0.89928 0.90931 0.88485 0.88825 0.75573 0.91392 0.91136 0.88804 0.91394 0.91454 0.91875 0.78105 0.93430 0.91231 0.90392 0.89842 0.89187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.69 8.44 37.15 0.31 -0.38 16 2 C -0.07 -0.41 0.77 -154.15 -0.12 -0.53 16 3 C -0.15 -0.87 7.73 37.16 0.29 -0.58 16 4 C -0.11 -0.49 4.83 -26.44 -0.13 -0.62 16 5 C -0.04 -0.18 5.66 -27.71 -0.16 -0.34 16 6 C -0.04 -0.36 6.65 -35.37 -0.24 -0.59 16 7 O 0.13 1.45 11.18 19.19 0.21 1.66 16 8 N -0.33 -4.43 11.89 33.29 0.40 -4.03 16 9 C -0.02 -0.22 7.19 -82.82 -0.60 -0.82 16 10 C 0.60 8.79 7.85 -12.11 -0.10 8.70 16 11 O -0.53 -8.67 16.09 5.37 0.09 -8.58 16 12 N -0.71 -9.90 5.55 -61.09 -0.34 -10.24 16 13 C 0.13 1.82 5.50 -4.04 -0.02 1.80 16 14 C -0.12 -1.87 3.62 -89.81 -0.33 -2.19 16 15 C -0.17 -2.90 7.44 -25.83 -0.19 -3.09 16 16 C 0.17 3.31 4.57 -67.03 -0.31 3.00 16 17 N -0.71 -17.55 5.31 -52.55 -0.28 -17.83 16 18 C -0.24 -6.72 9.97 -15.06 -0.15 -6.87 16 19 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 20 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 21 N -0.93 -28.06 13.06 55.49 0.72 -27.34 16 22 Si 0.91 22.38 29.55 -169.99 -5.02 17.36 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 C -0.15 -2.36 7.39 -25.92 -0.19 -2.55 16 27 C -0.15 -1.61 5.59 -104.92 -0.59 -2.20 16 28 C -0.03 -0.30 4.41 -27.90 -0.12 -0.42 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.39 5.67 -51.93 -0.29 0.10 16 33 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.08 0.23 8.11 -51.93 -0.42 -0.19 16 36 H 0.07 0.35 8.12 -51.93 -0.42 -0.07 16 37 H 0.10 0.37 6.99 -51.93 -0.36 0.01 16 38 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.41 5.60 8.25 -40.82 -0.34 5.26 16 40 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.07 0.98 7.88 -51.93 -0.41 0.57 16 42 H 0.09 1.58 8.14 -51.92 -0.42 1.15 16 43 H 0.07 1.04 7.92 -51.93 -0.41 0.63 16 44 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 45 H 0.06 1.25 8.10 -51.93 -0.42 0.82 16 46 H 0.38 10.14 7.90 -40.82 -0.32 9.81 16 47 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 48 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 49 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 50 H 0.08 0.75 8.12 -51.92 -0.42 0.33 16 51 H 0.09 0.93 7.81 -51.93 -0.41 0.53 16 LS Contribution 407.56 15.07 6.14 6.14 Total: -1.00 -31.97 407.56 -9.22 -41.19 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: -8.42 Total: 9.81 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: -2.72 Total: -8.15 kcal Atomic # 7 Polarization: -59.94 SS G_CDS: 0.50 Total: -59.44 kcal Atomic # 8 Polarization: -7.22 SS G_CDS: 0.30 Total: -6.92 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -31.97 -9.22 -41.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091161071.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.791 kcal (2) G-P(sol) polarization free energy of solvation -31.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds