Wall clock time and date at job start Wed Apr 1 2020 05:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.46148 * 2 1 4 4 C 1.53139 * 109.46316 * 239.99836 * 2 1 3 5 5 C 1.53426 * 109.71816 * 170.12996 * 4 2 1 6 6 C 1.50606 * 108.31581 * 50.03146 * 5 4 2 7 7 O 1.33187 * 129.60421 * 163.27451 * 6 5 4 8 8 N 1.21438 * 111.56714 * 180.12585 * 7 6 5 9 9 C 1.31495 * 111.52202 * 359.93780 * 8 7 6 10 10 C 1.48337 * 127.14905 * 179.97438 * 9 8 7 11 11 O 1.21496 * 119.99532 * 179.97438 * 10 9 8 12 12 N 1.34771 * 119.99915 * 359.97438 * 10 9 8 13 13 C 1.46507 * 119.99808 * 179.97438 * 12 10 9 14 14 C 1.52992 * 109.47257 * 180.02562 * 13 12 10 15 15 C 1.53779 * 113.61798 * 274.14121 * 14 13 12 16 16 C 1.53957 * 87.02308 * 220.04584 * 15 14 13 17 17 N 1.46495 * 113.53566 * 270.81046 * 16 15 14 18 18 C 1.36930 * 119.99869 * 252.48796 * 17 16 15 19 19 H 1.08004 * 120.00248 * 0.02562 * 18 17 16 20 20 C 1.38814 * 120.00079 * 180.02562 * 18 17 16 21 21 N 1.31616 * 120.00090 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00080 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.47260 * 89.99747 * 22 20 18 24 24 H 1.48497 * 109.47293 * 209.99449 * 22 20 18 25 25 H 1.48492 * 109.47247 * 329.99868 * 22 20 18 26 26 C 1.53779 * 87.10869 * 25.36034 * 16 15 14 27 27 C 1.35376 * 123.75865 * 343.30171 * 6 5 4 28 28 C 1.50063 * 124.93782 * 359.74316 * 27 6 5 29 29 H 1.08999 * 109.47167 * 300.01992 * 1 2 3 30 30 H 1.09003 * 109.46807 * 60.02466 * 1 2 3 31 31 H 1.09004 * 109.47034 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47314 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47023 * 299.98279 * 3 2 1 34 34 H 1.09006 * 109.46749 * 59.97722 * 3 2 1 35 35 H 1.08997 * 109.41838 * 50.06551 * 4 2 1 36 36 H 1.08991 * 109.44657 * 290.21324 * 4 2 1 37 37 H 1.09001 * 109.69965 * 290.32906 * 5 4 2 38 38 H 1.09006 * 109.69534 * 169.73657 * 5 4 2 39 39 H 0.97000 * 120.00759 * 0.02562 * 12 10 9 40 40 H 1.08998 * 109.47182 * 300.00715 * 13 12 10 41 41 H 1.09003 * 109.46895 * 59.99982 * 13 12 10 42 42 H 1.09008 * 112.85110 * 45.33683 * 14 13 12 43 43 H 1.09004 * 113.61414 * 334.56390 * 15 14 13 44 44 H 1.09000 * 113.62069 * 105.46641 * 15 14 13 45 45 H 1.08999 * 113.74167 * 139.93541 * 16 15 14 46 46 H 0.97001 * 120.00126 * 72.50230 * 17 16 15 47 47 H 0.96998 * 120.00568 * 180.02562 * 21 20 18 48 48 H 1.08994 * 113.61940 * 220.08975 * 26 16 15 49 49 H 1.09003 * 113.61817 * 89.18541 * 26 16 15 50 50 H 1.09007 * 109.70911 * 103.58313 * 28 27 6 51 51 H 1.08992 * 109.71496 * 224.17283 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0397 1.4426 0.0000 4 6 2.0402 -0.7220 -1.2504 5 6 3.5543 -0.5146 -1.3863 6 6 4.1982 -0.8497 -0.0667 7 8 5.4744 -1.1070 0.2142 8 7 5.6331 -1.3414 1.3951 9 6 4.4991 -1.2723 2.0573 10 6 4.2947 -1.4955 3.5094 11 8 3.1825 -1.3971 3.9884 12 7 5.3427 -1.8073 4.2973 13 6 5.1408 -2.0272 5.7317 14 6 6.4805 -2.3635 6.3896 15 6 6.8417 -3.8568 6.3233 16 6 7.3659 -3.7116 7.7636 17 7 8.7764 -3.3228 7.8364 18 6 9.7189 -4.2359 8.2274 19 1 9.4225 -5.2428 8.4817 20 6 11.0554 -3.8674 8.2970 21 7 11.4168 -2.6404 7.9866 22 14 12.3414 -5.1132 8.8297 23 1 12.8585 -5.8316 7.6372 24 1 13.4601 -4.4108 9.5080 25 1 11.7279 -6.0878 9.7671 26 6 6.3927 -2.5307 7.9158 27 6 3.5182 -0.9426 1.1001 28 6 2.0416 -0.7234 1.2541 29 1 -0.3633 0.5141 0.8898 30 1 -0.3633 0.5135 -0.8902 31 1 -0.3633 -1.0277 0.0005 32 1 3.1296 1.4428 0.0005 33 1 1.6765 1.9562 -0.8901 34 1 1.6759 1.9564 0.8898 35 1 1.5388 -0.3201 -2.1308 36 1 1.8263 -1.7874 -1.1669 37 1 3.7613 0.5245 -1.6426 38 1 3.9466 -1.1704 -2.1636 39 1 6.2307 -1.8855 3.9150 40 1 4.7311 -1.1239 6.1836 41 1 4.4459 -2.8541 5.8782 42 1 7.2872 -1.7045 6.0683 43 1 5.9750 -4.5123 6.2381 44 1 7.6201 -4.0860 5.5955 45 1 7.1268 -4.5597 8.4052 46 1 9.0427 -2.4185 7.6079 47 1 12.3507 -2.3830 8.0348 48 1 6.8090 -1.6906 8.4717 49 1 5.4029 -2.8228 8.2667 50 1 1.5361 -1.6837 1.3565 51 1 1.8507 -0.1117 2.1357 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091161071.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:04 Heat of formation + Delta-G solvation = 18.128217 kcal Electronic energy + Delta-G solvation = -30234.090509 eV Core-core repulsion = 26136.029827 eV Total energy + Delta-G solvation = -4098.060682 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -46.25323 -41.02997 -40.04996 -39.80243 -36.16499 -35.24558 -34.92369 -33.83965 -32.15192 -31.36581 -29.18961 -28.28307 -28.07940 -26.49006 -26.05258 -25.20345 -24.49566 -23.04962 -22.86588 -21.58707 -20.00966 -19.47211 -19.27390 -18.99817 -18.44870 -17.67581 -17.19923 -16.72538 -16.54959 -16.02388 -15.85366 -15.75848 -15.52119 -15.30438 -15.06926 -14.82106 -14.65037 -14.36558 -14.25877 -14.03470 -13.81770 -13.34657 -13.07414 -12.98667 -12.96899 -12.91876 -12.69032 -12.66589 -12.58110 -12.29016 -12.19218 -12.11163 -11.83528 -11.63482 -11.60335 -11.53746 -11.41719 -11.27138 -11.20057 -10.98687 -10.83838 -10.27924 -10.13936 -9.03176 -7.97670 -5.26379 -0.05074 0.59116 1.45937 1.47430 1.55994 1.72674 1.93787 1.94736 2.53686 2.80291 3.34499 3.40528 3.54808 3.66143 3.71132 3.78342 3.82495 3.90226 3.97235 4.07944 4.11085 4.18962 4.26482 4.33845 4.39900 4.45341 4.63108 4.65269 4.65845 4.71732 4.79852 4.88007 4.89760 4.91093 4.93383 5.01098 5.03634 5.06813 5.12252 5.13655 5.15421 5.23093 5.29053 5.37829 5.39570 5.47332 5.49200 5.53654 5.61313 6.17028 6.25648 6.78276 6.96040 7.30506 8.07472 8.29626 9.25595 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021405 B = 0.001854 C = 0.001757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.817334 B =15101.391563 C =15936.659054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.065 4.065 3 C -0.145 4.145 4 C -0.105 4.105 5 C -0.036 4.036 6 C -0.021 4.021 7 O 0.131 5.869 8 N -0.357 5.357 9 C -0.041 4.041 10 C 0.595 3.405 11 O -0.548 6.548 12 N -0.705 5.705 13 C 0.139 3.861 14 C -0.106 4.106 15 C -0.156 4.156 16 C 0.145 3.855 17 N -0.720 5.720 18 C -0.243 4.243 19 H 0.078 0.922 20 C -0.077 4.077 21 N -0.970 5.970 22 Si 0.974 3.026 23 H -0.288 1.288 24 H -0.296 1.296 25 H -0.268 1.268 26 C -0.130 4.130 27 C -0.166 4.166 28 C -0.031 4.031 29 H 0.050 0.950 30 H 0.076 0.924 31 H 0.059 0.941 32 H 0.046 0.954 33 H 0.080 0.920 34 H 0.045 0.955 35 H 0.112 0.888 36 H 0.070 0.930 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.410 0.590 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.093 0.907 44 H 0.043 0.957 45 H 0.064 0.936 46 H 0.373 0.627 47 H 0.251 0.749 48 H 0.060 0.940 49 H 0.110 0.890 50 H 0.077 0.923 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.843 6.831 -23.212 34.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.065 4.065 3 C -0.202 4.202 4 C -0.142 4.142 5 C -0.074 4.074 6 C -0.086 4.086 7 O 0.057 5.943 8 N -0.059 5.059 9 C -0.198 4.198 10 C 0.379 3.621 11 O -0.425 6.425 12 N -0.356 5.356 13 C 0.017 3.983 14 C -0.125 4.125 15 C -0.196 4.196 16 C 0.035 3.965 17 N -0.358 5.358 18 C -0.375 4.375 19 H 0.095 0.905 20 C -0.269 4.269 21 N -0.620 5.620 22 Si 0.803 3.197 23 H -0.216 1.216 24 H -0.222 1.222 25 H -0.193 1.193 26 C -0.169 4.169 27 C -0.171 4.171 28 C -0.069 4.069 29 H 0.069 0.931 30 H 0.095 0.905 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.099 0.901 34 H 0.064 0.936 35 H 0.130 0.870 36 H 0.089 0.911 37 H 0.135 0.865 38 H 0.135 0.865 39 H 0.245 0.755 40 H 0.091 0.909 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.112 0.888 44 H 0.062 0.938 45 H 0.082 0.918 46 H 0.206 0.794 47 H 0.060 0.940 48 H 0.078 0.922 49 H 0.129 0.871 50 H 0.096 0.904 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -24.287 6.439 -22.295 33.591 hybrid contribution 1.223 -0.147 0.548 1.348 sum -23.065 6.292 -21.747 32.319 Atomic orbital electron populations 1.21822 0.92655 1.02401 1.02648 1.20734 0.96730 0.95482 0.93527 1.21965 1.00665 0.94966 1.02583 1.21777 0.92563 1.01479 0.98411 1.20639 0.94366 1.04954 0.87428 1.24899 0.82172 1.01273 1.00213 1.84661 1.28164 1.62163 1.19343 1.74604 1.22854 1.17522 0.90895 1.23079 0.91396 1.08520 0.96791 1.17054 0.84640 0.76936 0.83433 1.90750 1.24307 1.52826 1.74622 1.45972 1.10825 1.69100 1.09693 1.21484 0.97159 1.01794 0.77864 1.22511 0.95696 0.97426 0.96849 1.23772 1.00441 0.95470 0.99952 1.21415 0.83540 0.96529 0.95015 1.42317 1.01761 1.11904 1.79844 1.19685 0.88233 0.93645 1.35936 0.90451 1.25588 0.99355 0.98465 1.03510 1.69815 1.16351 1.18981 1.56852 0.85123 0.78690 0.78116 0.77732 1.21557 1.22221 1.19295 1.23331 1.00616 0.98911 0.94029 1.20880 0.99290 1.06287 0.90643 1.20111 0.86287 1.01182 0.99289 0.93105 0.90463 0.92230 0.93453 0.90062 0.93610 0.86973 0.91098 0.86524 0.86456 0.75485 0.90897 0.90358 0.90512 0.88847 0.93809 0.91815 0.79448 0.94030 0.92170 0.87133 0.90418 0.91398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 8.44 71.98 0.61 -0.48 16 2 C -0.06 -0.65 0.77 -51.95 -0.04 -0.69 16 3 C -0.14 -1.46 7.73 71.98 0.56 -0.91 16 4 C -0.10 -0.60 4.83 30.78 0.15 -0.46 16 5 C -0.04 -0.25 5.66 29.96 0.17 -0.08 16 6 C -0.02 -0.35 6.65 24.99 0.17 -0.19 16 7 O 0.13 2.87 11.18 78.71 0.88 3.75 16 8 N -0.36 -9.61 11.89 -48.95 -0.58 -10.20 16 9 C -0.04 -1.13 7.19 42.55 0.31 -0.82 16 10 C 0.59 17.91 7.85 86.93 0.68 18.59 16 11 O -0.55 -18.40 16.09 -3.70 -0.06 -18.46 16 12 N -0.71 -19.93 5.55 -465.50 -2.59 -22.51 16 13 C 0.14 3.76 5.50 86.38 0.47 4.23 16 14 C -0.11 -3.22 3.62 -10.27 -0.04 -3.26 16 15 C -0.16 -5.23 7.44 31.18 0.23 -5.00 16 16 C 0.15 5.65 4.57 45.58 0.21 5.86 16 17 N -0.72 -36.44 5.31 -320.18 -1.70 -38.14 16 18 C -0.24 -13.60 9.97 84.04 0.84 -12.76 16 19 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 20 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 21 N -0.97 -59.83 13.06 21.65 0.28 -59.54 16 22 Si 0.97 46.54 29.55 68.60 2.03 48.57 16 23 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 24 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 25 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 26 C -0.13 -4.03 7.39 31.12 0.23 -3.80 16 27 C -0.17 -3.56 5.59 -20.06 -0.11 -3.67 16 28 C -0.03 -0.56 4.41 29.83 0.13 -0.43 16 29 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 32 H 0.05 0.57 5.67 -2.39 -0.01 0.56 16 33 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.04 0.57 8.14 -2.38 -0.02 0.55 16 35 H 0.11 0.08 8.11 -2.39 -0.02 0.06 16 36 H 0.07 0.48 8.12 -2.39 -0.02 0.46 16 37 H 0.12 0.44 6.99 -2.39 -0.02 0.42 16 38 H 0.12 0.34 8.14 -2.38 -0.02 0.32 16 39 H 0.41 11.51 8.25 -92.71 -0.76 10.74 16 40 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.08 2.03 7.88 -2.39 -0.02 2.02 16 42 H 0.08 2.63 8.14 -2.38 -0.02 2.62 16 43 H 0.09 2.68 7.92 -2.38 -0.02 2.66 16 44 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.06 2.46 8.10 -2.39 -0.02 2.44 16 46 H 0.37 20.30 7.90 -92.71 -0.73 19.57 16 47 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 48 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 49 H 0.11 2.75 8.10 -2.39 -0.02 2.73 16 50 H 0.08 1.43 8.12 -2.38 -0.02 1.41 16 51 H 0.07 1.49 7.81 -2.39 -0.02 1.47 16 Total: -1.00 -71.18 407.56 2.74 -68.44 By element: Atomic # 1 Polarization: 36.47 SS G_CDS: -0.55 Total: 35.93 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: 5.03 Total: -7.83 kcal Atomic # 7 Polarization: -125.81 SS G_CDS: -4.58 Total: -130.39 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: 0.82 Total: -14.71 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -71.18 2.74 -68.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091161071.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.568 kcal (2) G-P(sol) polarization free energy of solvation -71.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds