Wall clock time and date at job start Wed Apr 1 2020 04:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86806 * 119.99826 * 2 1 4 4 H 1.48505 * 109.46853 * 264.99200 * 3 2 1 5 5 H 1.48504 * 109.47125 * 24.98778 * 3 2 1 6 6 H 1.48499 * 109.47182 * 144.98957 * 3 2 1 7 7 C 1.38806 * 120.00267 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00247 * 188.96443 * 7 2 1 9 9 N 1.36942 * 120.00138 * 8.95864 * 7 2 1 10 10 C 1.50235 * 130.83982 * 189.85430 * 9 7 2 11 11 H 1.09001 * 115.85784 * 359.65903 * 10 9 7 12 12 C 1.55844 * 101.04665 * 233.99031 * 10 9 7 13 13 C 1.54852 * 103.44766 * 327.05944 * 12 10 9 14 14 C 1.50233 * 130.83356 * 9.88303 * 9 7 2 15 15 H 1.08992 * 116.46346 * 359.97424 * 14 9 7 16 16 C 1.55850 * 101.04913 * 233.94274 * 14 9 7 17 17 H 1.09006 * 110.62301 * 85.71199 * 16 14 9 18 18 N 1.46497 * 110.62664 * 208.57054 * 16 14 9 19 19 C 1.34770 * 120.00602 * 273.95296 * 18 16 14 20 20 O 1.21281 * 119.99647 * 0.02562 * 19 18 16 21 21 C 1.50698 * 120.00293 * 180.02562 * 19 18 16 22 22 H 1.09004 * 109.99532 * 58.90541 * 21 19 18 23 23 C 1.54317 * 109.88204 * 297.80911 * 21 19 18 24 24 C 1.55157 * 102.94398 * 262.77187 * 23 21 19 25 25 C 1.55128 * 101.48669 * 324.33628 * 24 23 21 26 26 N 1.47022 * 109.88133 * 179.97438 * 21 19 18 27 27 C 1.34774 * 125.65182 * 300.43618 * 26 21 19 28 28 O 1.21284 * 119.99585 * 0.02562 * 27 26 21 29 29 C 1.50699 * 120.00210 * 179.72453 * 27 26 21 30 30 C 1.52998 * 117.50016 * 249.02987 * 29 27 26 31 31 C 1.52997 * 117.49794 * 180.36593 * 29 27 26 32 32 C 1.54852 * 103.58543 * 327.14566 * 16 14 9 33 33 H 0.97001 * 120.00344 * 359.97438 * 1 2 3 34 34 H 1.09010 * 110.62797 * 208.56990 * 12 10 9 35 35 H 1.08996 * 110.62927 * 85.55544 * 12 10 9 36 36 H 1.09003 * 110.62662 * 241.51188 * 13 12 10 37 37 H 1.09002 * 110.76128 * 118.55421 * 13 12 10 38 38 H 0.97005 * 119.99477 * 93.96005 * 18 16 14 39 39 H 1.09000 * 110.71983 * 21.13744 * 23 21 19 40 40 H 1.09003 * 110.72190 * 144.23279 * 23 21 19 41 41 H 1.09002 * 111.00163 * 82.57549 * 24 23 21 42 42 H 1.08993 * 111.00762 * 206.42116 * 24 23 21 43 43 H 1.09001 * 110.49549 * 278.44786 * 25 24 23 44 44 H 1.08998 * 110.34217 * 156.05768 * 25 24 23 45 45 H 1.08998 * 115.54876 * 34.69688 * 29 27 26 46 46 H 1.08999 * 117.49885 * 359.97438 * 30 29 27 47 47 H 1.08996 * 117.50180 * 145.02291 * 30 29 27 48 48 H 1.08999 * 117.49905 * 214.97779 * 31 29 27 49 49 H 1.09000 * 117.50196 * 0.02562 * 31 29 27 50 50 H 1.09000 * 110.62439 * 118.41062 * 32 16 14 51 51 H 1.08999 * 110.62258 * 241.42619 * 32 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.6035 1.9853 -1.3948 5 1 1.3986 2.6810 0.5914 6 1 3.4908 1.4732 0.8032 7 6 2.0103 -1.2021 0.0005 8 1 3.0804 -1.2077 0.1463 9 7 1.3382 -2.3809 -0.1836 10 6 1.7937 -3.8049 -0.0361 11 1 2.8328 -3.9431 0.2625 12 6 1.4118 -4.3865 -1.4306 13 6 0.1344 -3.5987 -1.8119 14 6 -0.0815 -2.6482 -0.5959 15 1 -0.7046 -1.7745 -0.7867 16 6 -0.5595 -3.5748 0.5625 17 1 -0.9146 -2.9828 1.4061 18 7 -1.6077 -4.4856 0.0957 19 6 -2.8958 -4.0892 0.0995 20 8 -3.1871 -2.9782 0.4889 21 6 -3.9740 -5.0264 -0.3801 22 1 -3.9685 -5.9380 0.2175 23 6 -3.7459 -5.3720 -1.8667 24 6 -4.6913 -4.3857 -2.6019 25 6 -5.8934 -4.3226 -1.6234 26 7 -5.2865 -4.3715 -0.2802 27 6 -5.8447 -3.8994 0.8521 28 8 -5.2536 -3.9985 1.9065 29 6 -7.2001 -3.2423 0.8069 30 6 -7.2642 -1.7362 1.0685 31 6 -7.7759 -2.7194 2.1244 32 6 0.7165 -4.3631 0.9478 33 1 -0.4851 0.8400 0.0004 34 1 1.1976 -5.4528 -1.3564 35 1 2.2064 -4.2031 -2.1539 36 1 -0.7134 -4.2741 -1.9267 37 1 0.2927 -3.0243 -2.7247 38 1 -1.3746 -5.3742 -0.2160 39 1 -2.7081 -5.1944 -2.1490 40 1 -4.0280 -6.4051 -2.0702 41 1 -4.2238 -3.4076 -2.7154 42 1 -4.9974 -4.7851 -3.5688 43 1 -6.5526 -5.1777 -1.7730 44 1 -6.4429 -3.3909 -1.7578 45 1 -7.8998 -3.6573 0.0814 46 1 -6.3260 -1.2207 1.2738 47 1 -8.0063 -1.1604 0.5155 48 1 -8.8545 -2.7899 2.2655 49 1 -7.1742 -2.8502 3.0238 50 1 0.9957 -4.1599 1.9817 51 1 0.5693 -5.4317 0.7917 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096119838.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:31 Heat of formation + Delta-G solvation = 16.818133 kcal Electronic energy + Delta-G solvation = -32734.624892 eV Core-core repulsion = 28636.507401 eV Total energy + Delta-G solvation = -4098.117491 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.65499 -39.50438 -38.32850 -36.98929 -35.85260 -33.69298 -32.38251 -31.64644 -29.99021 -29.27030 -28.49170 -27.46872 -25.25297 -24.19648 -22.97619 -22.45326 -22.02271 -21.26414 -20.18588 -19.45560 -18.91911 -18.44738 -17.55568 -17.23698 -16.82902 -15.87708 -15.36394 -15.15055 -14.95417 -14.73651 -14.53975 -14.09285 -13.98469 -13.80079 -13.48888 -13.33639 -13.17261 -12.67399 -12.30614 -12.27310 -12.01551 -11.79048 -11.59349 -11.57677 -11.42665 -11.38202 -11.16297 -10.98609 -10.87199 -10.77831 -10.74354 -10.63937 -10.53455 -10.26421 -10.02678 -9.83247 -9.68584 -9.47239 -9.32522 -9.25031 -8.88160 -8.50038 -8.15782 -6.82656 -5.66480 -3.04775 2.61249 2.85276 3.18827 3.43204 3.47487 3.50575 3.72407 3.88131 4.30283 4.36720 4.50112 4.68828 4.73886 4.78241 4.86152 5.02471 5.03204 5.08615 5.23565 5.36366 5.41293 5.45367 5.52776 5.56002 5.59744 5.64321 5.67564 5.74569 5.80280 5.85913 5.95272 6.00084 6.01791 6.08771 6.11814 6.13733 6.23952 6.32538 6.33644 6.54801 6.62291 6.79304 6.89040 6.99895 7.07393 7.35368 7.54364 7.59891 7.82838 8.09860 8.21200 8.34497 8.87035 9.13543 9.78465 10.60730 11.44009 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011718 B = 0.003620 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.890921 B = 7732.253478 C = 8955.274479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.007 4.007 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.224 4.224 8 H 0.078 0.922 9 N -0.589 5.589 10 C 0.130 3.870 11 H 0.086 0.914 12 C -0.129 4.129 13 C -0.140 4.140 14 C 0.163 3.837 15 H 0.139 0.861 16 C 0.130 3.870 17 H 0.084 0.916 18 N -0.716 5.716 19 C 0.499 3.501 20 O -0.506 6.506 21 C 0.119 3.881 22 H 0.094 0.906 23 C -0.125 4.125 24 C -0.133 4.133 25 C 0.103 3.897 26 N -0.601 5.601 27 C 0.566 3.434 28 O -0.521 6.521 29 C -0.188 4.188 30 C -0.149 4.149 31 C -0.150 4.150 32 C -0.137 4.137 33 H 0.255 0.745 34 H 0.048 0.952 35 H 0.052 0.948 36 H 0.049 0.951 37 H 0.050 0.950 38 H 0.388 0.612 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.087 0.913 43 H 0.069 0.931 44 H 0.079 0.921 45 H 0.119 0.881 46 H 0.105 0.895 47 H 0.102 0.898 48 H 0.100 0.900 49 H 0.107 0.893 50 H 0.062 0.938 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.930 -14.063 -5.917 20.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.204 4.204 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.352 4.352 8 H 0.095 0.905 9 N -0.310 5.310 10 C 0.022 3.978 11 H 0.104 0.896 12 C -0.169 4.169 13 C -0.179 4.179 14 C 0.055 3.945 15 H 0.156 0.844 16 C 0.025 3.975 17 H 0.102 0.898 18 N -0.369 5.369 19 C 0.282 3.718 20 O -0.379 6.379 21 C 0.011 3.989 22 H 0.112 0.888 23 C -0.163 4.163 24 C -0.171 4.171 25 C -0.020 4.020 26 N -0.336 5.336 27 C 0.354 3.646 28 O -0.396 6.396 29 C -0.210 4.210 30 C -0.187 4.187 31 C -0.187 4.187 32 C -0.177 4.177 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.221 0.779 39 H 0.109 0.891 40 H 0.104 0.896 41 H 0.102 0.898 42 H 0.105 0.895 43 H 0.088 0.912 44 H 0.097 0.903 45 H 0.137 0.863 46 H 0.123 0.877 47 H 0.121 0.879 48 H 0.119 0.881 49 H 0.125 0.875 50 H 0.081 0.919 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.846 -12.887 -4.898 19.539 hybrid contribution 0.596 0.277 -0.246 0.701 sum -13.250 -12.610 -5.143 19.001 Atomic orbital electron populations 1.69724 1.04827 1.25272 1.55496 1.24806 0.95553 0.97608 1.02418 0.86160 0.78572 0.83579 0.77560 1.21648 1.21721 1.20769 1.18946 0.90771 0.82187 1.43263 0.90467 1.46447 1.08093 0.99016 1.77427 1.23045 0.95529 0.86489 0.92745 0.89619 1.22957 0.98107 0.97109 0.98714 1.23031 0.95876 0.98615 1.00384 1.23542 0.87221 0.94941 0.88836 0.84405 1.22661 0.84894 0.90243 0.99721 0.89813 1.46125 1.06382 1.17790 1.66578 1.20534 0.83489 0.88516 0.79264 1.90768 1.81706 1.20636 1.44773 1.21506 0.83887 0.95343 0.98154 0.88785 1.22692 1.01944 1.00215 0.91477 1.22838 0.95394 1.00880 0.98001 1.22380 0.96147 1.01968 0.81534 1.48060 1.17331 1.60432 1.07758 1.19198 0.85880 0.77247 0.82235 1.90719 1.63356 1.55946 1.29575 1.22093 0.96343 0.99065 1.03459 1.22973 1.03954 0.89640 1.02108 1.22955 1.00802 1.01944 0.93024 1.23227 0.96970 0.97300 1.00222 0.93504 0.93351 0.92907 0.93236 0.93140 0.77896 0.89093 0.89650 0.89830 0.89471 0.91241 0.90282 0.86287 0.87670 0.87947 0.88130 0.87452 0.91928 0.92634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.50 10.76 55.49 0.60 -26.91 16 2 C -0.01 -0.19 5.47 -17.43 -0.10 -0.28 16 3 Si 0.91 22.56 29.56 -169.99 -5.03 17.54 16 4 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.22 -6.27 10.55 -15.06 -0.16 -6.43 16 8 H 0.08 2.09 7.84 -52.49 -0.41 1.68 16 9 N -0.59 -14.87 2.98 -145.61 -0.43 -15.31 16 10 C 0.13 2.59 5.48 -62.60 -0.34 2.24 16 11 H 0.09 1.62 8.14 -51.93 -0.42 1.19 16 12 C -0.13 -2.24 6.44 -24.24 -0.16 -2.40 16 13 C -0.14 -2.67 6.33 -24.24 -0.15 -2.82 16 14 C 0.16 3.86 4.47 -62.80 -0.28 3.58 16 15 H 0.14 3.95 5.93 -51.93 -0.31 3.64 16 16 C 0.13 2.76 3.07 -65.43 -0.20 2.55 16 17 H 0.08 2.18 7.70 -51.93 -0.40 1.78 16 18 N -0.72 -12.03 3.32 -51.40 -0.17 -12.20 16 19 C 0.50 9.11 6.70 -10.99 -0.07 9.04 16 20 O -0.51 -12.06 14.59 -11.25 -0.16 -12.23 16 21 C 0.12 1.59 3.29 -68.11 -0.22 1.36 16 22 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 23 C -0.13 -1.16 6.44 -24.90 -0.16 -1.32 16 24 C -0.13 -1.18 7.10 -24.46 -0.17 -1.36 16 25 C 0.10 0.95 6.50 -2.38 -0.02 0.93 16 26 N -0.60 -8.19 2.87 -164.15 -0.47 -8.66 16 27 C 0.57 9.06 6.78 -10.99 -0.07 8.99 16 28 O -0.52 -10.71 15.34 -11.26 -0.17 -10.88 16 29 C -0.19 -2.24 5.25 -91.77 -0.48 -2.72 16 30 C -0.15 -1.75 10.24 -26.69 -0.27 -2.02 16 31 C -0.15 -1.68 10.05 -26.69 -0.27 -1.95 16 32 C -0.14 -2.53 6.23 -24.03 -0.15 -2.68 16 33 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 34 H 0.05 0.69 7.83 -51.92 -0.41 0.28 16 35 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.05 0.80 5.76 -51.93 -0.30 0.50 16 37 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.39 5.07 7.89 -40.82 -0.32 4.75 16 39 H 0.09 0.88 6.76 -51.93 -0.35 0.53 16 40 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.08 0.69 7.66 -51.93 -0.40 0.29 16 45 H 0.12 1.04 7.78 -51.93 -0.40 0.64 16 46 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 47 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 48 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 49 H 0.11 1.43 7.67 -51.93 -0.40 1.04 16 50 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 51 H 0.06 0.83 7.36 -51.93 -0.38 0.45 16 LS Contribution 397.31 15.07 5.99 5.99 Total: -1.00 -37.06 397.31 -11.42 -48.48 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -8.29 Total: 9.45 kcal Atomic # 6 Polarization: 8.01 SS G_CDS: -3.28 Total: 4.72 kcal Atomic # 7 Polarization: -62.60 SS G_CDS: -0.48 Total: -63.08 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: -0.34 Total: -23.11 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.03 Total: 17.54 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -37.06 -11.42 -48.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096119838.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.303 kcal (2) G-P(sol) polarization free energy of solvation -37.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds