Wall clock time and date at job start Wed Apr 1 2020 04:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86806 * 119.99826 * 2 1 4 4 H 1.48505 * 109.46853 * 264.99200 * 3 2 1 5 5 H 1.48504 * 109.47125 * 24.98778 * 3 2 1 6 6 H 1.48499 * 109.47182 * 144.98957 * 3 2 1 7 7 C 1.38806 * 120.00267 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00247 * 188.96443 * 7 2 1 9 9 N 1.36942 * 120.00138 * 8.95864 * 7 2 1 10 10 C 1.50235 * 130.83982 * 189.85430 * 9 7 2 11 11 H 1.09001 * 115.85784 * 359.65903 * 10 9 7 12 12 C 1.55844 * 101.04665 * 233.99031 * 10 9 7 13 13 C 1.54852 * 103.44766 * 327.05944 * 12 10 9 14 14 C 1.50233 * 130.83356 * 9.88303 * 9 7 2 15 15 H 1.08992 * 116.46346 * 359.97424 * 14 9 7 16 16 C 1.55850 * 101.04913 * 233.94274 * 14 9 7 17 17 H 1.09006 * 110.62301 * 85.71199 * 16 14 9 18 18 N 1.46497 * 110.62664 * 208.57054 * 16 14 9 19 19 C 1.34770 * 120.00602 * 273.95296 * 18 16 14 20 20 O 1.21281 * 119.99647 * 0.02562 * 19 18 16 21 21 C 1.50698 * 120.00293 * 180.02562 * 19 18 16 22 22 H 1.09004 * 109.99532 * 58.90541 * 21 19 18 23 23 C 1.54317 * 109.88204 * 297.80911 * 21 19 18 24 24 C 1.55157 * 102.94398 * 262.77187 * 23 21 19 25 25 C 1.55128 * 101.48669 * 324.33628 * 24 23 21 26 26 N 1.47022 * 109.88133 * 179.97438 * 21 19 18 27 27 C 1.34774 * 125.65182 * 300.43618 * 26 21 19 28 28 O 1.21284 * 119.99585 * 0.02562 * 27 26 21 29 29 C 1.50699 * 120.00210 * 179.72453 * 27 26 21 30 30 C 1.52998 * 117.50016 * 249.02987 * 29 27 26 31 31 C 1.52997 * 117.49794 * 180.36593 * 29 27 26 32 32 C 1.54852 * 103.58543 * 327.14566 * 16 14 9 33 33 H 0.97001 * 120.00344 * 359.97438 * 1 2 3 34 34 H 1.09010 * 110.62797 * 208.56990 * 12 10 9 35 35 H 1.08996 * 110.62927 * 85.55544 * 12 10 9 36 36 H 1.09003 * 110.62662 * 241.51188 * 13 12 10 37 37 H 1.09002 * 110.76128 * 118.55421 * 13 12 10 38 38 H 0.97005 * 119.99477 * 93.96005 * 18 16 14 39 39 H 1.09000 * 110.71983 * 21.13744 * 23 21 19 40 40 H 1.09003 * 110.72190 * 144.23279 * 23 21 19 41 41 H 1.09002 * 111.00163 * 82.57549 * 24 23 21 42 42 H 1.08993 * 111.00762 * 206.42116 * 24 23 21 43 43 H 1.09001 * 110.49549 * 278.44786 * 25 24 23 44 44 H 1.08998 * 110.34217 * 156.05768 * 25 24 23 45 45 H 1.08998 * 115.54876 * 34.69688 * 29 27 26 46 46 H 1.08999 * 117.49885 * 359.97438 * 30 29 27 47 47 H 1.08996 * 117.50180 * 145.02291 * 30 29 27 48 48 H 1.08999 * 117.49905 * 214.97779 * 31 29 27 49 49 H 1.09000 * 117.50196 * 0.02562 * 31 29 27 50 50 H 1.09000 * 110.62439 * 118.41062 * 32 16 14 51 51 H 1.08999 * 110.62258 * 241.42619 * 32 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.6035 1.9853 -1.3948 5 1 1.3986 2.6810 0.5914 6 1 3.4908 1.4732 0.8032 7 6 2.0103 -1.2021 0.0005 8 1 3.0804 -1.2077 0.1463 9 7 1.3382 -2.3809 -0.1836 10 6 1.7937 -3.8049 -0.0361 11 1 2.8328 -3.9431 0.2625 12 6 1.4118 -4.3865 -1.4306 13 6 0.1344 -3.5987 -1.8119 14 6 -0.0815 -2.6482 -0.5959 15 1 -0.7046 -1.7745 -0.7867 16 6 -0.5595 -3.5748 0.5625 17 1 -0.9146 -2.9828 1.4061 18 7 -1.6077 -4.4856 0.0957 19 6 -2.8958 -4.0892 0.0995 20 8 -3.1871 -2.9782 0.4889 21 6 -3.9740 -5.0264 -0.3801 22 1 -3.9685 -5.9380 0.2175 23 6 -3.7459 -5.3720 -1.8667 24 6 -4.6913 -4.3857 -2.6019 25 6 -5.8934 -4.3226 -1.6234 26 7 -5.2865 -4.3715 -0.2802 27 6 -5.8447 -3.8994 0.8521 28 8 -5.2536 -3.9985 1.9065 29 6 -7.2001 -3.2423 0.8069 30 6 -7.2642 -1.7362 1.0685 31 6 -7.7759 -2.7194 2.1244 32 6 0.7165 -4.3631 0.9478 33 1 -0.4851 0.8400 0.0004 34 1 1.1976 -5.4528 -1.3564 35 1 2.2064 -4.2031 -2.1539 36 1 -0.7134 -4.2741 -1.9267 37 1 0.2927 -3.0243 -2.7247 38 1 -1.3746 -5.3742 -0.2160 39 1 -2.7081 -5.1944 -2.1490 40 1 -4.0280 -6.4051 -2.0702 41 1 -4.2238 -3.4076 -2.7154 42 1 -4.9974 -4.7851 -3.5688 43 1 -6.5526 -5.1777 -1.7730 44 1 -6.4429 -3.3909 -1.7578 45 1 -7.8998 -3.6573 0.0814 46 1 -6.3260 -1.2207 1.2738 47 1 -8.0063 -1.1604 0.5155 48 1 -8.8545 -2.7899 2.2655 49 1 -7.1742 -2.8502 3.0238 50 1 0.9957 -4.1599 1.9817 51 1 0.5693 -5.4317 0.7917 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001096119838.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:30 Heat of formation + Delta-G solvation = -8.272978 kcal Electronic energy + Delta-G solvation = -32735.712924 eV Core-core repulsion = 28636.507401 eV Total energy + Delta-G solvation = -4099.205523 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.90282 -40.99188 -39.68345 -38.19831 -36.93887 -35.40268 -34.35438 -32.65600 -31.18289 -30.97542 -30.19101 -29.01226 -26.26016 -26.13608 -24.11962 -23.39511 -23.00124 -22.72922 -21.67674 -20.98932 -20.29580 -19.85204 -18.83460 -18.59470 -18.44062 -17.19256 -16.88429 -16.54628 -16.35524 -16.11305 -16.00003 -15.81203 -15.21491 -15.01890 -14.72699 -14.43419 -14.22364 -13.99679 -13.86348 -13.59630 -13.53586 -13.33572 -13.18840 -12.90135 -12.81518 -12.63898 -12.52095 -12.31857 -12.27612 -12.17521 -12.02195 -11.91534 -11.87675 -11.66073 -11.55498 -11.47840 -11.21779 -10.97788 -10.91504 -10.84126 -10.75277 -9.87390 -9.64589 -8.85826 -7.83530 -5.22453 1.40024 1.42997 1.44594 1.51150 1.77797 1.86707 2.33760 2.48725 2.91310 3.31175 3.40574 3.50495 3.60762 3.75258 3.83543 3.85844 3.92817 3.99627 4.06425 4.10803 4.14344 4.17107 4.30723 4.43910 4.45402 4.55489 4.63863 4.67320 4.71634 4.74917 4.76457 4.80577 4.87996 4.92556 4.97906 5.03711 5.05892 5.10183 5.15453 5.16996 5.27442 5.29226 5.36438 5.39737 5.48215 5.54312 5.78231 5.86676 6.17139 6.48521 6.72733 6.96475 7.18951 7.48773 7.67838 8.55336 9.25212 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011718 B = 0.003620 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.890921 B = 7732.253478 C = 8955.274479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.073 4.073 3 Si 0.975 3.025 4 H -0.284 1.284 5 H -0.303 1.303 6 H -0.266 1.266 7 C -0.224 4.224 8 H 0.085 0.915 9 N -0.621 5.621 10 C 0.123 3.877 11 H 0.100 0.900 12 C -0.113 4.113 13 C -0.126 4.126 14 C 0.148 3.852 15 H 0.078 0.922 16 C 0.145 3.855 17 H 0.014 0.986 18 N -0.698 5.698 19 C 0.489 3.511 20 O -0.574 6.574 21 C 0.118 3.882 22 H 0.111 0.889 23 C -0.113 4.113 24 C -0.132 4.132 25 C 0.096 3.904 26 N -0.605 5.605 27 C 0.547 3.453 28 O -0.585 6.585 29 C -0.185 4.185 30 C -0.155 4.155 31 C -0.145 4.145 32 C -0.123 4.123 33 H 0.241 0.759 34 H 0.100 0.900 35 H 0.055 0.945 36 H 0.083 0.917 37 H 0.031 0.969 38 H 0.413 0.587 39 H 0.088 0.912 40 H 0.133 0.867 41 H 0.045 0.955 42 H 0.128 0.872 43 H 0.112 0.888 44 H 0.081 0.919 45 H 0.164 0.836 46 H 0.057 0.943 47 H 0.139 0.861 48 H 0.142 0.858 49 H 0.074 0.926 50 H 0.048 0.952 51 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.607 -18.383 -8.692 25.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.266 4.266 3 Si 0.803 3.197 4 H -0.210 1.210 5 H -0.230 1.230 6 H -0.191 1.191 7 C -0.353 4.353 8 H 0.103 0.897 9 N -0.343 5.343 10 C 0.017 3.983 11 H 0.118 0.882 12 C -0.152 4.152 13 C -0.165 4.165 14 C 0.040 3.960 15 H 0.095 0.905 16 C 0.037 3.963 17 H 0.032 0.968 18 N -0.352 5.352 19 C 0.275 3.725 20 O -0.452 6.452 21 C 0.010 3.990 22 H 0.128 0.872 23 C -0.151 4.151 24 C -0.170 4.170 25 C -0.025 4.025 26 N -0.338 5.338 27 C 0.338 3.662 28 O -0.465 6.465 29 C -0.205 4.205 30 C -0.192 4.192 31 C -0.182 4.182 32 C -0.163 4.163 33 H 0.050 0.950 34 H 0.118 0.882 35 H 0.074 0.926 36 H 0.101 0.899 37 H 0.050 0.950 38 H 0.251 0.749 39 H 0.106 0.894 40 H 0.151 0.849 41 H 0.064 0.936 42 H 0.147 0.853 43 H 0.130 0.870 44 H 0.099 0.901 45 H 0.181 0.819 46 H 0.076 0.924 47 H 0.157 0.843 48 H 0.159 0.841 49 H 0.092 0.908 50 H 0.067 0.933 51 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -14.492 -17.307 -7.746 23.865 hybrid contribution 0.828 1.604 0.650 1.919 sum -13.663 -15.703 -7.096 21.991 Atomic orbital electron populations 1.70051 1.06529 1.24763 1.58043 1.25649 0.96226 1.01081 1.03630 0.85139 0.77529 0.79291 0.77695 1.21049 1.23014 1.19076 1.19372 0.91352 0.83670 1.40953 0.89743 1.46787 1.08943 1.00614 1.77978 1.23402 0.96582 0.83482 0.94813 0.88165 1.22885 0.96592 0.99355 0.96343 1.22890 0.98541 0.98053 0.97033 1.23262 0.86252 0.94489 0.92002 0.90462 1.22058 0.86909 0.90749 0.96557 0.96761 1.45838 1.05360 1.18072 1.65924 1.21691 0.84669 0.88444 0.77714 1.90755 1.82776 1.24056 1.47603 1.21740 0.81935 0.93942 1.01376 0.87171 1.22807 1.02016 1.02750 0.87550 1.22878 0.94967 0.99263 0.99878 1.22773 0.96743 1.04040 0.78978 1.48308 1.17358 1.59216 1.08880 1.20049 0.87190 0.76879 0.82099 1.90676 1.65259 1.58477 1.32048 1.22257 0.95012 0.98425 1.04824 1.22951 1.02878 0.89937 1.03430 1.23015 1.02456 1.01149 0.91572 1.23157 0.94353 0.99646 0.99112 0.95027 0.88165 0.92581 0.89904 0.94956 0.74902 0.89377 0.84910 0.93577 0.85347 0.86968 0.90055 0.81874 0.92378 0.84285 0.84054 0.90780 0.93324 0.87404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.26 10.76 21.65 0.23 -62.03 16 2 C -0.07 -4.41 5.47 84.86 0.46 -3.95 16 3 Si 0.97 48.70 29.56 68.60 2.03 50.73 16 4 H -0.28 -13.74 7.11 99.48 0.71 -13.04 16 5 H -0.30 -15.57 7.11 99.48 0.71 -14.86 16 6 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 7 C -0.22 -13.01 10.55 84.03 0.89 -12.12 16 8 H 0.08 4.63 7.84 -2.91 -0.02 4.60 16 9 N -0.62 -32.25 2.98 -614.59 -1.83 -34.08 16 10 C 0.12 4.68 5.48 46.36 0.25 4.93 16 11 H 0.10 3.52 8.14 -2.39 -0.02 3.50 16 12 C -0.11 -3.47 6.44 32.21 0.21 -3.26 16 13 C -0.13 -4.67 6.33 32.21 0.20 -4.47 16 14 C 0.15 7.38 4.47 46.23 0.21 7.58 16 15 H 0.08 4.87 5.93 -2.39 -0.01 4.85 16 16 C 0.14 6.38 3.07 46.61 0.14 6.52 16 17 H 0.01 0.81 7.70 -2.38 -0.02 0.79 16 18 N -0.70 -23.32 3.32 -434.91 -1.44 -24.76 16 19 C 0.49 18.56 6.70 87.66 0.59 19.15 16 20 O -0.57 -30.13 14.59 13.04 0.19 -29.94 16 21 C 0.12 2.98 3.29 44.59 0.15 3.13 16 22 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 23 C -0.11 -1.63 6.44 31.78 0.20 -1.43 16 24 C -0.13 -1.93 7.10 32.06 0.23 -1.70 16 25 C 0.10 1.47 6.50 86.92 0.56 2.03 16 26 N -0.60 -16.02 2.87 -791.63 -2.27 -18.30 16 27 C 0.55 18.14 6.78 87.66 0.59 18.74 16 28 O -0.58 -25.97 15.34 13.03 0.20 -25.77 16 29 C -0.18 -4.28 5.25 -11.54 -0.06 -4.34 16 30 C -0.15 -3.75 10.24 30.62 0.31 -3.44 16 31 C -0.14 -3.26 10.05 30.62 0.31 -2.95 16 32 C -0.12 -4.36 6.23 32.34 0.20 -4.16 16 33 H 0.24 15.75 8.31 -92.71 -0.77 14.98 16 34 H 0.10 2.13 7.83 -2.38 -0.02 2.11 16 35 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.08 2.45 5.76 -2.39 -0.01 2.44 16 37 H 0.03 1.29 8.14 -2.39 -0.02 1.28 16 38 H 0.41 9.41 7.89 -92.70 -0.73 8.68 16 39 H 0.09 1.35 6.76 -2.39 -0.02 1.34 16 40 H 0.13 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.08 1.23 7.66 -2.39 -0.02 1.21 16 45 H 0.16 2.27 7.78 -2.39 -0.02 2.25 16 46 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 47 H 0.14 2.29 8.14 -2.39 -0.02 2.27 16 48 H 0.14 1.99 8.14 -2.39 -0.02 1.98 16 49 H 0.07 2.17 7.67 -2.39 -0.02 2.16 16 50 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 51 H 0.11 2.70 7.36 -2.39 -0.02 2.69 16 Total: -1.00 -97.74 397.31 2.77 -94.98 By element: Atomic # 1 Polarization: 28.69 SS G_CDS: 0.21 Total: 28.89 kcal Atomic # 6 Polarization: 14.82 SS G_CDS: 5.45 Total: 20.27 kcal Atomic # 7 Polarization: -133.85 SS G_CDS: -5.31 Total: -139.16 kcal Atomic # 8 Polarization: -56.10 SS G_CDS: 0.39 Total: -55.71 kcal Atomic # 14 Polarization: 48.70 SS G_CDS: 2.03 Total: 50.73 kcal Total: -97.74 2.77 -94.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096119838.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.705 kcal (2) G-P(sol) polarization free energy of solvation -97.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds