Wall clock time and date at job start Wed Apr 1 2020 04:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00287 * 2 1 4 4 H 1.48502 * 109.46839 * 269.99791 * 3 2 1 5 5 H 1.48501 * 109.47108 * 29.99883 * 3 2 1 6 6 H 1.48502 * 109.47231 * 150.00157 * 3 2 1 7 7 C 1.38813 * 119.99872 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00130 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00031 * 0.02562 * 7 2 1 10 10 C 1.50240 * 130.83869 * 0.02562 * 9 7 2 11 11 H 1.09001 * 115.85699 * 359.60438 * 10 9 7 12 12 C 1.55848 * 101.04998 * 233.93305 * 10 9 7 13 13 C 1.54848 * 103.58622 * 326.97930 * 12 10 9 14 14 C 1.51798 * 131.52183 * 179.13250 * 9 7 2 15 15 H 1.09000 * 115.77391 * 0.03506 * 14 9 7 16 16 C 1.55838 * 101.44667 * 234.11703 * 14 9 7 17 17 H 1.09004 * 110.62602 * 208.75928 * 16 14 9 18 18 N 1.46506 * 110.63044 * 85.74200 * 16 14 9 19 19 C 1.34773 * 119.99930 * 159.51943 * 18 16 14 20 20 O 1.21282 * 120.00252 * 0.02562 * 19 18 16 21 21 C 1.50702 * 119.99549 * 180.02562 * 19 18 16 22 22 H 1.08998 * 110.33011 * 28.48459 * 21 19 18 23 23 C 1.54915 * 110.36527 * 266.24547 * 21 19 18 24 24 C 1.55152 * 101.58276 * 204.15189 * 23 21 19 25 25 C 1.54324 * 102.94135 * 35.50255 * 24 23 21 26 26 N 1.47018 * 107.27180 * 337.80738 * 25 24 23 27 27 C 1.34782 * 125.64813 * 178.97870 * 26 25 24 28 28 O 1.21283 * 119.99910 * 184.54955 * 27 26 25 29 29 C 1.50698 * 120.00131 * 4.54343 * 27 26 25 30 30 C 1.53002 * 117.50281 * 248.62571 * 29 27 26 31 31 C 1.52997 * 117.49853 * 180.02562 * 29 27 26 32 32 C 1.54849 * 103.44891 * 327.24848 * 16 14 9 33 33 H 0.97001 * 119.99887 * 0.02562 * 1 2 3 34 34 H 1.09003 * 110.62785 * 85.55169 * 12 10 9 35 35 H 1.09002 * 110.62411 * 208.40856 * 12 10 9 36 36 H 1.09003 * 110.62455 * 118.57089 * 13 12 10 37 37 H 1.09003 * 110.62692 * 241.58747 * 13 12 10 38 38 H 0.96999 * 119.99193 * 339.52047 * 18 16 14 39 39 H 1.09005 * 111.00426 * 322.23102 * 23 21 19 40 40 H 1.09002 * 111.00203 * 86.04022 * 23 21 19 41 41 H 1.08998 * 110.72443 * 153.86465 * 24 23 21 42 42 H 1.09001 * 110.72064 * 276.96628 * 24 23 21 43 43 H 1.09008 * 109.88081 * 97.22151 * 25 24 23 44 44 H 1.09000 * 109.88595 * 218.23506 * 25 24 23 45 45 H 1.09000 * 115.54760 * 34.33519 * 29 27 26 46 46 H 1.09004 * 117.49523 * 0.02562 * 30 29 27 47 47 H 1.08997 * 117.49768 * 145.01532 * 30 29 27 48 48 H 1.09001 * 117.49832 * 214.97866 * 31 29 27 49 49 H 1.08999 * 117.50282 * 0.02562 * 31 29 27 50 50 H 1.08993 * 110.63154 * 241.51654 * 32 16 14 51 51 H 1.09001 * 110.76030 * 118.55268 * 32 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1501 -2.6705 -0.0005 11 1 -0.8014 -1.7966 0.0054 12 6 -0.2751 -3.6106 1.2363 13 6 1.0639 -4.3883 1.2389 14 6 1.8065 -3.8277 -0.0162 15 1 2.8876 -3.9661 -0.0303 16 6 1.0397 -4.3957 -1.2482 17 1 0.8555 -5.4632 -1.1271 18 7 1.7831 -4.1358 -2.4836 19 6 1.5366 -4.8712 -3.5858 20 8 0.6990 -5.7479 -3.5551 21 6 2.3017 -4.6042 -4.8564 22 1 3.2875 -4.1997 -4.6269 23 6 1.5152 -3.6255 -5.7638 24 6 2.0850 -3.9730 -7.1644 25 6 2.3132 -5.4968 -7.0763 26 7 2.4240 -5.8399 -5.6510 27 6 2.6078 -7.0789 -5.1533 28 8 2.6026 -7.2574 -3.9537 29 6 2.8196 -8.2424 -6.0873 30 6 1.7091 -9.2915 -6.1722 31 6 3.0219 -9.6235 -5.4608 32 6 -0.2932 -3.6075 -1.2376 33 1 -0.4850 0.8401 -0.0004 34 1 -0.3830 -3.0287 2.1516 35 1 -1.1158 -4.2939 1.1157 36 1 1.6201 -4.1921 2.1555 37 1 0.8875 -5.4570 1.1169 38 1 2.4527 -3.4344 -2.5082 39 1 0.4445 -3.8243 -5.7172 40 1 1.7300 -2.5899 -5.4999 41 1 1.3619 -3.7359 -7.9447 42 1 3.0248 -3.4492 -7.3393 43 1 1.4688 -6.0243 -7.5200 44 1 3.2326 -5.7647 -7.5970 45 1 3.3712 -8.0179 -7.0002 46 1 0.8251 -9.1399 -5.5527 47 1 1.5299 -9.7573 -7.1412 48 1 3.7065 -10.3079 -5.9617 49 1 3.0013 -9.6907 -4.3731 50 1 -1.1384 -4.2840 -1.1111 51 1 -0.4038 -3.0232 -2.1510 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097990921.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:34 Heat of formation + Delta-G solvation = 10.508603 kcal Electronic energy + Delta-G solvation = -32284.774978 eV Core-core repulsion = 28186.383885 eV Total energy + Delta-G solvation = -4098.391093 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.67686 -39.33994 -38.34063 -37.18828 -35.96282 -33.61462 -32.49165 -31.76995 -30.03519 -29.01078 -28.63460 -27.43064 -25.33691 -24.19049 -23.15719 -22.59909 -21.96817 -21.10350 -19.97371 -19.77853 -18.90852 -18.42524 -17.61624 -17.19454 -16.91891 -15.99534 -15.55487 -15.11518 -14.94033 -14.74820 -14.51658 -14.24497 -13.92018 -13.69987 -13.66536 -13.34226 -13.11312 -12.82577 -12.60665 -12.27604 -11.99345 -11.89212 -11.72291 -11.70044 -11.58052 -11.11654 -11.06534 -11.02913 -10.89071 -10.88623 -10.78193 -10.66001 -10.42752 -10.27471 -10.08219 -9.84707 -9.73951 -9.56645 -9.18045 -9.12154 -8.93582 -8.61576 -8.28500 -6.91520 -5.71640 -3.10197 2.53026 2.66577 3.21352 3.36058 3.41659 3.43743 3.69747 3.74813 4.25150 4.36167 4.41206 4.59291 4.62510 4.68638 4.72516 4.94079 5.01055 5.09502 5.17198 5.23773 5.38993 5.40179 5.40472 5.49690 5.55011 5.64002 5.70734 5.72958 5.76523 5.79045 5.94064 5.95319 5.96941 6.12215 6.15248 6.19371 6.24685 6.39250 6.48889 6.57604 6.66989 6.82316 6.89050 7.01348 7.23369 7.39248 7.45045 7.48668 7.82315 8.12139 8.19670 8.25384 8.81799 9.09530 9.71864 10.55804 11.37220 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014006 B = 0.003209 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.615916 B = 8723.456081 C = 9943.841190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.012 4.012 3 Si 0.914 3.086 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.209 4.209 8 H 0.077 0.923 9 N -0.593 5.593 10 C 0.153 3.847 11 H 0.152 0.848 12 C -0.138 4.138 13 C -0.125 4.125 14 C 0.123 3.877 15 H 0.086 0.914 16 C 0.137 3.863 17 H 0.077 0.923 18 N -0.705 5.705 19 C 0.516 3.484 20 O -0.529 6.529 21 C 0.117 3.883 22 H 0.091 0.909 23 C -0.121 4.121 24 C -0.130 4.130 25 C 0.105 3.895 26 N -0.604 5.604 27 C 0.558 3.442 28 O -0.511 6.511 29 C -0.188 4.188 30 C -0.152 4.152 31 C -0.149 4.149 32 C -0.141 4.141 33 H 0.253 0.747 34 H 0.054 0.946 35 H 0.047 0.953 36 H 0.058 0.942 37 H 0.050 0.950 38 H 0.399 0.601 39 H 0.083 0.917 40 H 0.095 0.905 41 H 0.086 0.914 42 H 0.080 0.920 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.120 0.880 46 H 0.101 0.899 47 H 0.102 0.898 48 H 0.101 0.899 49 H 0.108 0.892 50 H 0.051 0.949 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.855 -12.266 -15.876 20.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.208 4.208 3 Si 0.745 3.255 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.209 1.209 7 C -0.337 4.337 8 H 0.095 0.905 9 N -0.314 5.314 10 C 0.047 3.953 11 H 0.168 0.832 12 C -0.178 4.178 13 C -0.164 4.164 14 C 0.015 3.985 15 H 0.104 0.896 16 C 0.031 3.969 17 H 0.095 0.905 18 N -0.354 5.354 19 C 0.300 3.700 20 O -0.405 6.405 21 C 0.010 3.990 22 H 0.109 0.891 23 C -0.159 4.159 24 C -0.168 4.168 25 C -0.018 4.018 26 N -0.340 5.340 27 C 0.346 3.654 28 O -0.385 6.385 29 C -0.209 4.209 30 C -0.189 4.189 31 C -0.186 4.186 32 C -0.182 4.182 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.233 0.767 39 H 0.102 0.898 40 H 0.113 0.887 41 H 0.105 0.895 42 H 0.099 0.901 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.138 0.862 46 H 0.120 0.880 47 H 0.120 0.880 48 H 0.120 0.880 49 H 0.126 0.874 50 H 0.070 0.930 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.299 -12.749 -15.127 20.245 hybrid contribution 0.860 1.259 -0.177 1.535 sum 5.159 -11.490 -15.304 19.820 Atomic orbital electron populations 1.69473 1.04961 1.24847 1.57547 1.24686 0.95592 0.97364 1.03121 0.86069 0.78490 0.83455 0.77439 1.21795 1.21758 1.20851 1.18997 0.90177 0.81826 1.42693 0.90479 1.46868 1.01543 0.98410 1.84603 1.23701 0.87488 0.95303 0.88831 0.83170 1.23063 0.95203 0.98246 1.01274 1.22876 0.97766 0.97601 0.98196 1.23515 0.96011 0.86664 0.92323 0.89614 1.22447 0.92683 0.98374 0.83412 0.90510 1.45874 1.41732 1.36925 1.10914 1.20107 0.83641 0.81795 0.84488 1.90649 1.34234 1.31634 1.83984 1.21854 0.99627 0.85843 0.91664 0.89125 1.22747 1.00676 0.99080 0.93423 1.22638 1.02214 0.94246 0.97661 1.21998 1.01527 0.96375 0.81888 1.48128 1.73388 1.05573 1.06955 1.19251 0.76060 0.81734 0.88358 1.90765 1.49039 1.83264 1.15466 1.22121 1.07027 0.90035 1.01703 1.22926 0.93345 0.99869 1.02776 1.22943 0.99317 0.94642 1.01683 1.23442 0.95123 0.98230 1.01360 0.93625 0.92690 0.93452 0.92314 0.93159 0.76728 0.89787 0.88698 0.89538 0.90124 0.91217 0.91256 0.86203 0.88024 0.87961 0.88035 0.87377 0.93006 0.92407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.85 10.46 55.49 0.58 -25.27 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 3 Si 0.91 21.37 29.55 -169.99 -5.02 16.34 16 4 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.21 -5.50 10.63 -15.06 -0.16 -5.66 16 8 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16 9 N -0.59 -14.32 3.05 -144.37 -0.44 -14.76 16 10 C 0.15 3.59 4.67 -62.80 -0.29 3.29 16 11 H 0.15 4.00 5.52 -51.93 -0.29 3.71 16 12 C -0.14 -2.86 6.43 -24.24 -0.16 -3.01 16 13 C -0.12 -2.40 6.49 -24.02 -0.16 -2.56 16 14 C 0.12 2.52 5.09 -61.68 -0.31 2.21 16 15 H 0.09 1.69 8.14 -51.93 -0.42 1.26 16 16 C 0.14 2.77 2.75 -65.44 -0.18 2.59 16 17 H 0.08 1.64 7.39 -51.93 -0.38 1.26 16 18 N -0.70 -13.08 5.10 -51.40 -0.26 -13.34 16 19 C 0.52 9.46 5.73 -10.99 -0.06 9.39 16 20 O -0.53 -11.59 14.48 -16.91 -0.24 -11.83 16 21 C 0.12 1.62 3.57 -67.57 -0.24 1.38 16 22 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 23 C -0.12 -1.33 6.49 -24.58 -0.16 -1.49 16 24 C -0.13 -0.98 6.95 -24.90 -0.17 -1.15 16 25 C 0.11 0.90 6.35 -3.07 -0.02 0.88 16 26 N -0.60 -7.87 3.12 -164.34 -0.51 -8.38 16 27 C 0.56 8.35 7.06 -10.98 -0.08 8.28 16 28 O -0.51 -10.00 13.90 -16.91 -0.24 -10.23 16 29 C -0.19 -1.99 5.51 -91.77 -0.51 -2.49 16 30 C -0.15 -1.45 10.23 -26.75 -0.27 -1.72 16 31 C -0.15 -1.46 10.04 -26.76 -0.27 -1.73 16 32 C -0.14 -3.02 6.23 -24.24 -0.15 -3.17 16 33 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 34 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.05 0.89 7.80 -51.93 -0.41 0.48 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.05 0.88 7.83 -51.93 -0.41 0.48 16 38 H 0.40 7.00 8.62 -40.82 -0.35 6.65 16 39 H 0.08 1.06 8.05 -51.93 -0.42 0.64 16 40 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.56 8.14 -51.92 -0.42 0.13 16 44 H 0.07 0.44 7.98 -51.93 -0.41 0.03 16 45 H 0.12 0.94 7.74 -51.93 -0.40 0.53 16 46 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 47 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 48 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.11 1.31 7.67 -51.93 -0.40 0.91 16 50 H 0.05 1.06 7.81 -51.93 -0.41 0.65 16 51 H 0.06 1.32 7.98 -51.93 -0.41 0.90 16 LS Contribution 400.79 15.07 6.04 6.04 Total: -1.00 -33.92 400.79 -11.87 -45.79 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: -8.48 Total: 11.04 kcal Atomic # 6 Polarization: 7.89 SS G_CDS: -3.29 Total: 4.60 kcal Atomic # 7 Polarization: -61.12 SS G_CDS: -0.63 Total: -61.76 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: -0.48 Total: -22.06 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.92 -11.87 -45.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097990921.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.300 kcal (2) G-P(sol) polarization free energy of solvation -33.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds