Wall clock time and date at job start Wed Apr 1 2020 04:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86802 * 120.00144 * 2 1 4 4 H 1.48497 * 109.47010 * 270.00157 * 3 2 1 5 5 H 1.48494 * 109.47004 * 30.00376 * 3 2 1 6 6 H 1.48500 * 109.46899 * 150.00125 * 3 2 1 7 7 C 1.38812 * 119.99539 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99717 * 156.88915 * 7 2 1 9 9 N 1.36932 * 120.00445 * 336.88219 * 7 2 1 10 10 C 1.46505 * 119.99774 * 322.62700 * 9 7 2 11 11 C 1.53004 * 109.46513 * 265.32378 * 10 9 7 12 12 O 1.42902 * 109.46925 * 65.00344 * 11 10 9 13 13 C 1.46502 * 120.00222 * 142.61740 * 9 7 2 14 14 C 1.53038 * 109.45923 * 300.00397 * 13 9 7 15 15 C 1.53191 * 109.30961 * 181.38244 * 14 13 9 16 16 N 1.46929 * 108.77973 * 305.36487 * 15 14 13 17 17 C 1.34775 * 120.63601 * 233.58640 * 16 15 14 18 18 O 1.21697 * 119.99520 * 4.70276 * 17 16 15 19 19 C 1.46677 * 120.00108 * 184.70025 * 17 16 15 20 20 N 1.37659 * 126.23051 * 256.19522 * 19 17 16 21 21 H 0.97000 * 125.67753 * 0.22353 * 20 19 17 22 22 C 1.35527 * 108.64253 * 180.26280 * 20 19 17 23 23 C 1.35461 * 108.87286 * 359.97438 * 22 20 19 24 24 C 1.37868 * 126.23551 * 76.50212 * 19 17 16 25 25 C 1.50706 * 126.45470 * 359.76318 * 24 19 17 26 26 C 1.52992 * 117.49590 * 188.61848 * 25 24 19 27 27 C 1.53000 * 60.00302 * 252.50880 * 26 25 24 28 28 C 1.46929 * 118.73476 * 53.85896 * 16 15 14 29 29 C 1.53047 * 109.45489 * 60.07318 * 13 9 7 30 30 H 0.97000 * 119.99370 * 359.97438 * 1 2 3 31 31 H 1.08996 * 109.47101 * 25.32261 * 10 9 7 32 32 H 1.08996 * 109.47376 * 145.33046 * 10 9 7 33 33 H 1.09003 * 109.46686 * 185.00011 * 11 10 9 34 34 H 1.08993 * 109.47427 * 305.00001 * 11 10 9 35 35 H 0.96703 * 113.99904 * 179.97438 * 12 11 10 36 36 H 1.08996 * 109.45939 * 180.02562 * 13 9 7 37 37 H 1.09003 * 109.49785 * 61.43704 * 14 13 9 38 38 H 1.08994 * 109.49851 * 301.33257 * 14 13 9 39 39 H 1.08998 * 109.58850 * 185.58000 * 15 14 13 40 40 H 1.09003 * 109.70594 * 65.22262 * 15 14 13 41 41 H 1.07998 * 125.56687 * 179.97438 * 22 20 19 42 42 H 1.07995 * 126.06585 * 179.97438 * 23 22 20 43 43 H 1.08994 * 115.54905 * 334.32515 * 25 24 19 44 44 H 1.09000 * 117.50554 * 359.97438 * 26 25 24 45 45 H 1.09003 * 117.50322 * 145.02265 * 26 25 24 46 46 H 1.08994 * 117.50137 * 252.51223 * 27 26 25 47 47 H 1.09000 * 117.49757 * 107.48664 * 27 26 25 48 48 H 1.08999 * 109.58679 * 65.92841 * 28 16 15 49 49 H 1.09002 * 109.58734 * 186.35586 * 28 16 15 50 50 H 1.08994 * 109.49411 * 298.56447 * 29 13 9 51 51 H 1.09000 * 109.49581 * 58.66447 * 29 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0253 -1.2396 -0.3677 9 7 1.4080 -2.3407 0.4645 10 6 0.5096 -2.2745 1.6199 11 6 1.2929 -2.5974 2.8940 12 8 2.2743 -1.5835 3.1196 13 6 1.6619 -3.6248 -0.1933 14 6 1.2206 -3.5441 -1.6565 15 6 1.4556 -4.8989 -2.3319 16 7 2.8617 -5.2826 -2.1460 17 6 3.6302 -5.6088 -3.2039 18 8 3.1873 -5.5051 -4.3327 19 6 5.0004 -6.0887 -2.9949 20 7 6.1548 -5.3645 -3.1902 21 1 6.2007 -4.4427 -3.4886 22 6 7.2164 -6.1542 -2.8969 23 6 6.7640 -7.3730 -2.5160 24 6 5.3671 -7.3489 -2.5728 25 6 4.4374 -8.4862 -2.2360 26 6 5.0500 -9.7333 -1.5955 27 6 4.5743 -9.7750 -3.0491 28 6 3.4123 -5.3098 -0.7840 29 6 3.1570 -3.9450 -0.1264 30 1 -0.4849 0.8401 0.0004 31 1 0.0891 -1.2718 1.6962 32 1 -0.2961 -2.9980 1.4956 33 1 0.6083 -2.6356 3.7414 34 1 1.7867 -3.5626 2.7821 35 1 2.8093 -1.7236 3.9129 36 1 1.0998 -4.4095 0.3128 37 1 1.8002 -2.7766 -2.1695 38 1 0.1611 -3.2931 -1.7036 39 1 1.2364 -4.8193 -3.3966 40 1 0.8088 -5.6515 -1.8809 41 1 8.2538 -5.8600 -2.9569 42 1 7.3741 -8.2142 -2.2219 43 1 3.4363 -8.1963 -1.9170 44 1 6.1254 -9.7314 -1.4181 45 1 4.4519 -10.2642 -0.8548 46 1 3.6633 -10.3332 -3.2647 47 1 5.3368 -9.8003 -3.8276 48 1 2.9218 -6.0938 -0.2072 49 1 4.4845 -5.5013 -0.8271 50 1 3.7181 -3.1736 -0.6538 51 1 3.4755 -3.9792 0.9154 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098389025.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:40 Heat of formation + Delta-G solvation = 14.371379 kcal Electronic energy + Delta-G solvation = -32062.724195 eV Core-core repulsion = 27964.500605 eV Total energy + Delta-G solvation = -4098.223590 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.47734 -39.42397 -37.47157 -37.08023 -36.13926 -34.60676 -32.08250 -30.97372 -30.81853 -30.33731 -29.16708 -27.63824 -25.04011 -23.71802 -23.09940 -22.74981 -22.48736 -21.61926 -20.77453 -20.23295 -19.50136 -18.57600 -17.84469 -16.66756 -16.52081 -16.14003 -15.72517 -15.30638 -14.84685 -14.78003 -14.44121 -14.32743 -14.00444 -13.77144 -13.72177 -13.33420 -13.31053 -13.06932 -12.84911 -12.61928 -12.39244 -12.07613 -11.96277 -11.66073 -11.57964 -11.46099 -11.19948 -10.95868 -10.91272 -10.77155 -10.62421 -10.51242 -10.47663 -10.13033 -9.92718 -9.84627 -9.78913 -9.47991 -9.11229 -8.76942 -8.41094 -8.35197 -8.07205 -6.51932 -5.73123 -3.24548 1.84407 2.41817 2.66359 3.12650 3.41911 3.49541 3.52779 3.55505 3.93894 4.54994 4.58519 4.68730 4.83509 4.92320 5.03296 5.13716 5.22331 5.25357 5.32186 5.39818 5.43978 5.52923 5.54755 5.57294 5.70676 5.72376 5.81899 5.84637 5.98414 6.00996 6.01873 6.05756 6.08445 6.16019 6.25716 6.27245 6.37774 6.45777 6.59564 6.68632 6.73220 6.78844 6.82890 6.89415 7.11600 7.22258 7.35841 7.55167 7.62138 7.89980 8.24612 8.44267 8.62414 9.24789 9.89368 10.45118 11.30088 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013940 B = 0.003092 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.162445 B = 9053.976201 C = 9411.194708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.018 3.982 3 Si 0.893 3.107 4 H -0.291 1.291 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.236 4.236 8 H 0.053 0.947 9 N -0.571 5.571 10 C 0.147 3.853 11 C 0.059 3.941 12 O -0.544 6.544 13 C 0.177 3.823 14 C -0.132 4.132 15 C 0.111 3.889 16 N -0.588 5.588 17 C 0.586 3.414 18 O -0.540 6.540 19 C -0.019 4.019 20 N -0.528 5.528 21 H 0.421 0.579 22 C 0.005 3.995 23 C -0.199 4.199 24 C -0.087 4.087 25 C -0.085 4.085 26 C -0.171 4.171 27 C -0.172 4.172 28 C 0.111 3.889 29 C -0.137 4.137 30 H 0.252 0.748 31 H 0.098 0.902 32 H 0.037 0.963 33 H 0.019 0.981 34 H 0.022 0.978 35 H 0.349 0.651 36 H 0.046 0.954 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.063 0.937 41 H 0.168 0.832 42 H 0.138 0.862 43 H 0.106 0.894 44 H 0.096 0.904 45 H 0.094 0.906 46 H 0.093 0.907 47 H 0.094 0.906 48 H 0.064 0.936 49 H 0.079 0.921 50 H 0.066 0.934 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.096 -16.680 0.191 19.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.182 4.182 3 Si 0.723 3.277 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.366 4.366 8 H 0.071 0.929 9 N -0.290 5.290 10 C 0.020 3.980 11 C -0.021 4.021 12 O -0.345 6.345 13 C 0.069 3.931 14 C -0.172 4.172 15 C -0.012 4.012 16 N -0.321 5.321 17 C 0.372 3.628 18 O -0.417 6.417 19 C -0.135 4.135 20 N -0.122 5.122 21 H 0.258 0.742 22 C -0.129 4.129 23 C -0.224 4.224 24 C -0.095 4.095 25 C -0.104 4.104 26 C -0.208 4.208 27 C -0.209 4.209 28 C -0.012 4.012 29 C -0.177 4.177 30 H 0.061 0.939 31 H 0.116 0.884 32 H 0.055 0.945 33 H 0.037 0.963 34 H 0.041 0.959 35 H 0.192 0.808 36 H 0.065 0.935 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.104 0.896 40 H 0.081 0.919 41 H 0.186 0.814 42 H 0.156 0.844 43 H 0.124 0.876 44 H 0.114 0.886 45 H 0.112 0.888 46 H 0.112 0.888 47 H 0.113 0.887 48 H 0.083 0.917 49 H 0.098 0.902 50 H 0.085 0.915 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 9.419 -16.045 -1.022 18.634 hybrid contribution 0.810 1.120 0.582 1.500 sum 10.229 -14.925 -0.439 18.100 Atomic orbital electron populations 1.70030 1.05545 1.25504 1.52314 1.25008 0.94814 0.98482 0.99871 0.86472 0.79855 0.84153 0.77217 1.21836 1.21756 1.20428 1.18664 0.94208 0.85677 1.38010 0.92908 1.43702 1.53520 1.02537 1.29207 1.20950 0.90306 1.03238 0.83469 1.23101 0.90372 0.89623 0.99031 1.86857 1.51151 1.49279 1.47221 1.20321 0.92177 0.89164 0.91425 1.22287 1.02556 0.94429 0.97880 1.21833 0.79587 0.97443 1.02298 1.48098 1.12205 1.64994 1.06775 1.17180 0.83924 0.77172 0.84537 1.90820 1.74249 1.53593 1.23003 1.19899 0.86716 0.93698 1.13148 1.41809 1.04929 1.13659 1.51834 0.74199 1.21860 0.92278 0.91931 1.06811 1.20570 0.93682 0.97765 1.10337 1.18845 0.93345 0.92180 1.05127 1.20295 0.98449 0.86953 1.04695 1.22937 1.01303 1.00659 0.95860 1.22974 1.03233 1.00085 0.94610 1.21937 0.98996 0.98841 0.81472 1.22427 1.00629 0.94596 1.00078 0.93859 0.88435 0.94511 0.96288 0.95938 0.80810 0.93536 0.91090 0.90801 0.89624 0.91910 0.81425 0.84415 0.87591 0.88591 0.88752 0.88835 0.88731 0.91728 0.90236 0.91500 0.91476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.32 11.65 55.49 0.65 -24.68 16 2 C 0.02 0.49 4.86 -17.43 -0.08 0.40 16 3 Si 0.89 22.15 29.61 -169.99 -5.03 17.12 16 4 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.24 -6.19 7.95 -15.06 -0.12 -6.31 16 8 H 0.05 1.43 6.91 -52.48 -0.36 1.07 16 9 N -0.57 -13.16 2.32 -165.61 -0.38 -13.54 16 10 C 0.15 3.28 5.59 -4.04 -0.02 3.26 16 11 C 0.06 1.11 7.39 37.16 0.27 1.38 16 12 O -0.54 -11.02 13.36 -35.23 -0.47 -11.49 16 13 C 0.18 3.36 2.59 -67.89 -0.18 3.19 16 14 C -0.13 -2.50 5.31 -26.61 -0.14 -2.64 16 15 C 0.11 1.77 6.44 -3.71 -0.02 1.75 16 16 N -0.59 -9.06 2.97 -174.04 -0.52 -9.58 16 17 C 0.59 9.64 7.33 -12.85 -0.09 9.55 16 18 O -0.54 -10.70 16.52 5.19 0.09 -10.61 16 19 C -0.02 -0.27 4.96 -81.98 -0.41 -0.68 16 20 N -0.53 -6.06 6.10 -9.39 -0.06 -6.12 16 21 H 0.42 4.19 8.96 -40.82 -0.37 3.83 16 22 C 0.01 0.05 11.89 -16.91 -0.20 -0.15 16 23 C -0.20 -2.09 10.15 -39.98 -0.41 -2.50 16 24 C -0.09 -1.09 5.62 -104.16 -0.59 -1.67 16 25 C -0.09 -0.96 6.02 -91.77 -0.55 -1.51 16 26 C -0.17 -1.51 10.03 -26.73 -0.27 -1.77 16 27 C -0.17 -1.68 10.23 -26.73 -0.27 -1.95 16 28 C 0.11 1.54 6.34 -3.48 -0.02 1.52 16 29 C -0.14 -2.32 5.32 -26.38 -0.14 -2.46 16 30 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.10 2.56 5.64 -51.93 -0.29 2.27 16 32 H 0.04 0.76 8.02 -51.93 -0.42 0.35 16 33 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.35 5.10 9.12 45.56 0.42 5.52 16 36 H 0.05 0.83 7.86 -51.93 -0.41 0.42 16 37 H 0.07 1.56 7.71 -51.93 -0.40 1.16 16 38 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 39 H 0.09 1.45 6.99 -51.93 -0.36 1.09 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.17 1.04 8.06 -52.49 -0.42 0.61 16 42 H 0.14 1.18 7.25 -52.49 -0.38 0.80 16 43 H 0.11 1.27 8.14 -51.93 -0.42 0.84 16 44 H 0.10 0.78 7.03 -51.93 -0.36 0.41 16 45 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 48 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 49 H 0.08 1.07 6.19 -51.93 -0.32 0.74 16 50 H 0.07 1.29 7.06 -51.93 -0.37 0.92 16 51 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 408.39 15.07 6.15 6.15 Total: -1.00 -32.92 408.39 -10.23 -43.15 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: -7.41 Total: 10.19 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: -3.24 Total: -0.60 kcal Atomic # 7 Polarization: -53.60 SS G_CDS: -0.31 Total: -53.92 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: -0.38 Total: -22.10 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.03 Total: 17.12 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -32.92 -10.23 -43.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098389025.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.525 kcal (2) G-P(sol) polarization free energy of solvation -32.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds