Wall clock time and date at job start Wed Apr 1 2020 04:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86802 * 120.00144 * 2 1 4 4 H 1.48497 * 109.47010 * 270.00157 * 3 2 1 5 5 H 1.48494 * 109.47004 * 30.00376 * 3 2 1 6 6 H 1.48500 * 109.46899 * 150.00125 * 3 2 1 7 7 C 1.38812 * 119.99539 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99717 * 156.88915 * 7 2 1 9 9 N 1.36932 * 120.00445 * 336.88219 * 7 2 1 10 10 C 1.46505 * 119.99774 * 322.62700 * 9 7 2 11 11 C 1.53004 * 109.46513 * 265.32378 * 10 9 7 12 12 O 1.42902 * 109.46925 * 65.00344 * 11 10 9 13 13 C 1.46502 * 120.00222 * 142.61740 * 9 7 2 14 14 C 1.53038 * 109.45923 * 300.00397 * 13 9 7 15 15 C 1.53191 * 109.30961 * 181.38244 * 14 13 9 16 16 N 1.46929 * 108.77973 * 305.36487 * 15 14 13 17 17 C 1.34775 * 120.63601 * 233.58640 * 16 15 14 18 18 O 1.21697 * 119.99520 * 4.70276 * 17 16 15 19 19 C 1.46677 * 120.00108 * 184.70025 * 17 16 15 20 20 N 1.37659 * 126.23051 * 256.19522 * 19 17 16 21 21 H 0.97000 * 125.67753 * 0.22353 * 20 19 17 22 22 C 1.35527 * 108.64253 * 180.26280 * 20 19 17 23 23 C 1.35461 * 108.87286 * 359.97438 * 22 20 19 24 24 C 1.37868 * 126.23551 * 76.50212 * 19 17 16 25 25 C 1.50706 * 126.45470 * 359.76318 * 24 19 17 26 26 C 1.52992 * 117.49590 * 188.61848 * 25 24 19 27 27 C 1.53000 * 60.00302 * 252.50880 * 26 25 24 28 28 C 1.46929 * 118.73476 * 53.85896 * 16 15 14 29 29 C 1.53047 * 109.45489 * 60.07318 * 13 9 7 30 30 H 0.97000 * 119.99370 * 359.97438 * 1 2 3 31 31 H 1.08996 * 109.47101 * 25.32261 * 10 9 7 32 32 H 1.08996 * 109.47376 * 145.33046 * 10 9 7 33 33 H 1.09003 * 109.46686 * 185.00011 * 11 10 9 34 34 H 1.08993 * 109.47427 * 305.00001 * 11 10 9 35 35 H 0.96703 * 113.99904 * 179.97438 * 12 11 10 36 36 H 1.08996 * 109.45939 * 180.02562 * 13 9 7 37 37 H 1.09003 * 109.49785 * 61.43704 * 14 13 9 38 38 H 1.08994 * 109.49851 * 301.33257 * 14 13 9 39 39 H 1.08998 * 109.58850 * 185.58000 * 15 14 13 40 40 H 1.09003 * 109.70594 * 65.22262 * 15 14 13 41 41 H 1.07998 * 125.56687 * 179.97438 * 22 20 19 42 42 H 1.07995 * 126.06585 * 179.97438 * 23 22 20 43 43 H 1.08994 * 115.54905 * 334.32515 * 25 24 19 44 44 H 1.09000 * 117.50554 * 359.97438 * 26 25 24 45 45 H 1.09003 * 117.50322 * 145.02265 * 26 25 24 46 46 H 1.08994 * 117.50137 * 252.51223 * 27 26 25 47 47 H 1.09000 * 117.49757 * 107.48664 * 27 26 25 48 48 H 1.08999 * 109.58679 * 65.92841 * 28 16 15 49 49 H 1.09002 * 109.58734 * 186.35586 * 28 16 15 50 50 H 1.08994 * 109.49411 * 298.56447 * 29 13 9 51 51 H 1.09000 * 109.49581 * 58.66447 * 29 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0253 -1.2396 -0.3677 9 7 1.4080 -2.3407 0.4645 10 6 0.5096 -2.2745 1.6199 11 6 1.2929 -2.5974 2.8940 12 8 2.2743 -1.5835 3.1196 13 6 1.6619 -3.6248 -0.1933 14 6 1.2206 -3.5441 -1.6565 15 6 1.4556 -4.8989 -2.3319 16 7 2.8617 -5.2826 -2.1460 17 6 3.6302 -5.6088 -3.2039 18 8 3.1873 -5.5051 -4.3327 19 6 5.0004 -6.0887 -2.9949 20 7 6.1548 -5.3645 -3.1902 21 1 6.2007 -4.4427 -3.4886 22 6 7.2164 -6.1542 -2.8969 23 6 6.7640 -7.3730 -2.5160 24 6 5.3671 -7.3489 -2.5728 25 6 4.4374 -8.4862 -2.2360 26 6 5.0500 -9.7333 -1.5955 27 6 4.5743 -9.7750 -3.0491 28 6 3.4123 -5.3098 -0.7840 29 6 3.1570 -3.9450 -0.1264 30 1 -0.4849 0.8401 0.0004 31 1 0.0891 -1.2718 1.6962 32 1 -0.2961 -2.9980 1.4956 33 1 0.6083 -2.6356 3.7414 34 1 1.7867 -3.5626 2.7821 35 1 2.8093 -1.7236 3.9129 36 1 1.0998 -4.4095 0.3128 37 1 1.8002 -2.7766 -2.1695 38 1 0.1611 -3.2931 -1.7036 39 1 1.2364 -4.8193 -3.3966 40 1 0.8088 -5.6515 -1.8809 41 1 8.2538 -5.8600 -2.9569 42 1 7.3741 -8.2142 -2.2219 43 1 3.4363 -8.1963 -1.9170 44 1 6.1254 -9.7314 -1.4181 45 1 4.4519 -10.2642 -0.8548 46 1 3.6633 -10.3332 -3.2647 47 1 5.3368 -9.8003 -3.8276 48 1 2.9218 -6.0938 -0.2072 49 1 4.4845 -5.5013 -0.8271 50 1 3.7181 -3.1736 -0.6538 51 1 3.4755 -3.9792 0.9154 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098389025.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:39 Heat of formation + Delta-G solvation = -7.432451 kcal Electronic energy + Delta-G solvation = -32063.669680 eV Core-core repulsion = 27964.500605 eV Total energy + Delta-G solvation = -4099.169075 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.39886 -40.67970 -38.99833 -37.84162 -37.62890 -36.22853 -33.83413 -32.45529 -31.89880 -31.64395 -30.22360 -29.29590 -26.64886 -25.16117 -24.38521 -23.87281 -23.18336 -22.79933 -22.06650 -21.55163 -20.86268 -19.57761 -18.98829 -18.16784 -18.05534 -17.64357 -16.76586 -16.64229 -16.33079 -16.09190 -15.95545 -15.61851 -15.13279 -15.07482 -14.89916 -14.79878 -14.59107 -14.36220 -14.08140 -13.78953 -13.72940 -13.43382 -13.34221 -13.07834 -13.02956 -12.76642 -12.57473 -12.42984 -12.37674 -12.26620 -12.14423 -11.84834 -11.68615 -11.65001 -11.50923 -11.29983 -11.16164 -11.04453 -10.60769 -10.38262 -9.72281 -9.56369 -8.96367 -8.45768 -7.76539 -5.30049 0.90948 1.27711 1.40786 1.44965 1.53833 1.87278 1.99943 2.55067 2.56403 3.19037 3.33873 3.50513 3.60149 3.84764 3.86423 3.95755 4.08466 4.15252 4.20707 4.22229 4.33420 4.35194 4.41686 4.52800 4.59680 4.60683 4.65345 4.68481 4.77999 4.82408 4.87586 4.88069 4.92588 4.96311 5.08219 5.10347 5.11722 5.19797 5.25956 5.35924 5.40671 5.48029 5.58307 5.61981 5.75106 5.81689 5.90522 6.04451 6.30371 6.54058 6.57549 6.99373 7.22433 7.29597 7.97755 8.46745 9.21278 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013940 B = 0.003092 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.162445 B = 9053.976201 C = 9411.194708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.032 4.032 3 Si 0.939 3.061 4 H -0.292 1.292 5 H -0.296 1.296 6 H -0.278 1.278 7 C -0.221 4.221 8 H 0.040 0.960 9 N -0.583 5.583 10 C 0.141 3.859 11 C 0.069 3.931 12 O -0.577 6.577 13 C 0.173 3.827 14 C -0.119 4.119 15 C 0.120 3.880 16 N -0.587 5.587 17 C 0.587 3.413 18 O -0.585 6.585 19 C -0.063 4.063 20 N -0.532 5.532 21 H 0.424 0.576 22 C 0.025 3.975 23 C -0.212 4.212 24 C -0.080 4.080 25 C -0.111 4.111 26 C -0.148 4.148 27 C -0.175 4.175 28 C 0.123 3.877 29 C -0.123 4.123 30 H 0.245 0.755 31 H 0.056 0.944 32 H 0.048 0.952 33 H 0.045 0.955 34 H 0.044 0.956 35 H 0.375 0.625 36 H 0.070 0.930 37 H 0.030 0.970 38 H 0.054 0.946 39 H 0.071 0.929 40 H 0.092 0.908 41 H 0.206 0.794 42 H 0.161 0.839 43 H 0.095 0.905 44 H 0.107 0.893 45 H 0.108 0.892 46 H 0.098 0.902 47 H 0.092 0.908 48 H 0.092 0.908 49 H 0.091 0.909 50 H 0.036 0.964 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.351 -19.486 1.771 23.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.228 4.228 3 Si 0.769 3.231 4 H -0.220 1.220 5 H -0.222 1.222 6 H -0.203 1.203 7 C -0.352 4.352 8 H 0.058 0.942 9 N -0.303 5.303 10 C 0.015 3.985 11 C -0.011 4.011 12 O -0.382 6.382 13 C 0.067 3.933 14 C -0.159 4.159 15 C -0.002 4.002 16 N -0.318 5.318 17 C 0.375 3.625 18 O -0.465 6.465 19 C -0.177 4.177 20 N -0.127 5.127 21 H 0.262 0.738 22 C -0.110 4.110 23 C -0.236 4.236 24 C -0.088 4.088 25 C -0.130 4.130 26 C -0.185 4.185 27 C -0.212 4.212 28 C 0.001 3.999 29 C -0.163 4.163 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.221 0.779 36 H 0.088 0.912 37 H 0.049 0.951 38 H 0.072 0.928 39 H 0.090 0.910 40 H 0.110 0.890 41 H 0.223 0.777 42 H 0.178 0.822 43 H 0.113 0.887 44 H 0.126 0.874 45 H 0.126 0.874 46 H 0.117 0.883 47 H 0.110 0.890 48 H 0.110 0.890 49 H 0.109 0.891 50 H 0.054 0.946 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 11.698 -18.873 0.601 22.213 hybrid contribution 0.166 1.918 0.095 1.928 sum 11.864 -16.955 0.696 20.705 Atomic orbital electron populations 1.70132 1.06387 1.25280 1.54599 1.25509 0.95380 1.00659 1.01270 0.85737 0.78781 0.81737 0.76851 1.21961 1.22217 1.20316 1.18694 0.93577 0.86929 1.36034 0.94206 1.43877 1.53338 1.02974 1.30078 1.20930 0.91112 1.01349 0.85141 1.22878 0.90478 0.89924 0.97809 1.86774 1.51978 1.50254 1.49175 1.20520 0.93971 0.87986 0.90836 1.22092 1.00477 0.95128 0.98195 1.21658 0.80887 0.96355 1.01343 1.48145 1.11792 1.64455 1.07448 1.17583 0.84953 0.76146 0.83811 1.90782 1.75399 1.55620 1.24702 1.19625 0.86014 0.95035 1.17054 1.41911 1.04793 1.14034 1.51929 0.73841 1.22552 0.93274 0.91221 1.03958 1.20891 0.92957 0.98912 1.10846 1.19128 0.94513 0.91575 1.03593 1.20355 0.98230 0.87552 1.06818 1.23027 1.02062 0.98173 0.95247 1.23024 1.03590 0.99112 0.95444 1.21926 1.00057 0.97501 0.80440 1.22224 0.98211 0.95469 1.00386 0.94593 0.92554 0.93345 0.93690 0.93774 0.77906 0.91153 0.95062 0.92772 0.91022 0.88958 0.77725 0.82179 0.88680 0.87423 0.87402 0.88320 0.88963 0.88980 0.89092 0.94555 0.90737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.07 11.65 21.65 0.25 -53.82 16 2 C -0.03 -1.80 4.86 84.86 0.41 -1.38 16 3 Si 0.94 46.73 29.61 68.60 2.03 48.76 16 4 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 5 H -0.30 -14.79 7.11 99.48 0.71 -14.08 16 6 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 7 C -0.22 -11.89 7.95 84.03 0.67 -11.22 16 8 H 0.04 2.23 6.91 -2.91 -0.02 2.21 16 9 N -0.58 -26.97 2.32 -677.86 -1.57 -28.54 16 10 C 0.14 6.23 5.59 86.38 0.48 6.71 16 11 C 0.07 2.42 7.39 71.98 0.53 2.96 16 12 O -0.58 -22.41 13.36 -148.98 -1.99 -24.40 16 13 C 0.17 6.48 2.59 45.02 0.12 6.60 16 14 C -0.12 -4.64 5.31 30.67 0.16 -4.48 16 15 C 0.12 3.85 6.44 86.36 0.56 4.41 16 16 N -0.59 -17.79 2.97 -822.75 -2.44 -20.23 16 17 C 0.59 19.46 7.33 86.45 0.63 20.09 16 18 O -0.58 -23.99 16.52 -4.34 -0.07 -24.06 16 19 C -0.06 -1.70 4.96 40.35 0.20 -1.50 16 20 N -0.53 -11.45 6.10 -183.62 -1.12 -12.57 16 21 H 0.42 8.18 8.96 -92.71 -0.83 7.35 16 22 C 0.02 0.39 11.89 83.48 0.99 1.39 16 23 C -0.21 -3.77 10.15 22.01 0.22 -3.55 16 24 C -0.08 -1.82 5.62 -19.56 -0.11 -1.93 16 25 C -0.11 -2.26 6.02 -11.54 -0.07 -2.33 16 26 C -0.15 -2.12 10.03 30.59 0.31 -1.82 16 27 C -0.17 -3.03 10.23 30.60 0.31 -2.72 16 28 C 0.12 3.18 6.34 86.51 0.55 3.73 16 29 C -0.12 -4.01 5.32 30.82 0.16 -3.85 16 30 H 0.24 14.19 8.31 -92.71 -0.77 13.42 16 31 H 0.06 3.01 5.64 -2.39 -0.01 3.00 16 32 H 0.05 1.97 8.02 -2.39 -0.02 1.95 16 33 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.37 10.05 9.12 -74.06 -0.68 9.37 16 36 H 0.07 2.32 7.86 -2.39 -0.02 2.30 16 37 H 0.03 1.44 7.71 -2.39 -0.02 1.42 16 38 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.07 2.52 6.99 -2.39 -0.02 2.51 16 40 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 41 H 0.21 1.61 8.06 -2.91 -0.02 1.59 16 42 H 0.16 2.06 7.25 -2.91 -0.02 2.03 16 43 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 44 H 0.11 1.30 7.03 -2.39 -0.02 1.28 16 45 H 0.11 1.26 8.14 -2.39 -0.02 1.25 16 46 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 47 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 48 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 49 H 0.09 2.23 6.19 -2.39 -0.01 2.21 16 50 H 0.04 1.40 7.06 -2.39 -0.02 1.39 16 51 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -74.95 408.39 0.67 -74.28 By element: Atomic # 1 Polarization: 30.04 SS G_CDS: -0.55 Total: 29.49 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: 6.13 Total: 11.09 kcal Atomic # 7 Polarization: -110.28 SS G_CDS: -4.88 Total: -115.17 kcal Atomic # 8 Polarization: -46.40 SS G_CDS: -2.06 Total: -48.47 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.76 kcal Total: -74.95 0.67 -74.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098389025.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.846 kcal (2) G-P(sol) polarization free energy of solvation -74.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds