Wall clock time and date at job start Wed Apr 1 2020 04:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00340 * 2 1 4 4 H 1.48500 * 109.47131 * 240.00329 * 3 2 1 5 5 H 1.48496 * 109.47130 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47105 * 120.00363 * 3 2 1 7 7 C 1.38811 * 119.99805 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00506 * 179.97438 * 7 2 1 9 9 N 1.36947 * 120.00003 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99696 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.46490 * 180.02562 * 10 9 7 12 12 C 1.52998 * 112.84410 * 183.71834 * 11 10 9 13 13 H 1.08997 * 109.59143 * 42.01953 * 12 11 10 14 14 C 1.53200 * 109.58206 * 162.29789 * 12 11 10 15 15 C 1.53044 * 109.31050 * 174.42177 * 14 12 11 16 16 C 1.53038 * 109.54021 * 298.63509 * 15 14 12 17 17 C 1.53195 * 109.31041 * 61.36634 * 16 15 14 18 18 N 1.46921 * 108.77585 * 305.36427 * 17 16 15 19 19 C 1.34778 * 120.63017 * 233.63026 * 18 17 16 20 20 O 1.21282 * 120.00061 * 185.75501 * 19 18 17 21 21 C 1.50701 * 120.00117 * 5.75800 * 19 18 17 22 22 C 1.50699 * 109.47285 * 179.97438 * 21 19 18 23 23 C 1.41386 * 128.00322 * 89.99562 * 22 21 19 24 24 N 1.30171 * 106.39203 * 179.97438 * 23 22 21 25 25 O 1.20920 * 111.60641 * 0.02562 * 24 23 22 26 26 C 1.34039 * 111.56891 * 359.76409 * 25 24 23 27 27 C 1.53781 * 113.61355 * 52.52866 * 11 10 9 28 28 C 1.53779 * 87.07790 * 219.93250 * 27 11 10 29 29 C 1.53776 * 87.08636 * 25.43233 * 28 27 11 30 30 H 0.97006 * 119.99715 * 359.97438 * 1 2 3 31 31 H 0.96993 * 119.99619 * 0.02562 * 9 7 2 32 32 H 1.09000 * 109.47373 * 60.00660 * 10 9 7 33 33 H 1.09000 * 109.47210 * 299.99817 * 10 9 7 34 34 H 1.08992 * 109.50090 * 294.37307 * 14 12 11 35 35 H 1.08993 * 109.49705 * 54.43999 * 14 12 11 36 36 H 1.09004 * 109.46068 * 58.65783 * 15 14 12 37 37 H 1.09003 * 109.45847 * 178.61349 * 15 14 12 38 38 H 1.09001 * 109.49507 * 181.31279 * 16 15 14 39 39 H 1.08991 * 109.49834 * 301.41541 * 16 15 14 40 40 H 1.09003 * 109.59007 * 65.15378 * 17 16 15 41 41 H 1.08999 * 109.58384 * 185.57878 * 17 16 15 42 42 H 1.08999 * 109.46715 * 300.00196 * 21 19 18 43 43 H 1.09003 * 109.46992 * 59.99693 * 21 19 18 44 44 H 1.07997 * 126.80382 * 359.97438 * 23 22 21 45 45 H 1.08001 * 126.77905 * 180.28870 * 26 25 24 46 46 H 1.08999 * 113.61774 * 105.38318 * 27 11 10 47 47 H 1.08995 * 113.61637 * 334.47445 * 27 11 10 48 48 H 1.09004 * 113.61890 * 139.98336 * 28 27 11 49 49 H 1.09012 * 113.61480 * 270.88281 * 28 27 11 50 50 H 1.08997 * 113.61673 * 89.11283 * 29 28 27 51 51 H 1.09006 * 113.62005 * 220.02664 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0636 -4.8197 -0.0012 12 6 1.7469 -6.1856 0.0902 13 1 2.5575 -6.1408 0.8175 14 6 0.7260 -7.2425 0.5236 15 6 1.3794 -8.6257 0.4787 16 6 1.8193 -8.9377 -0.9535 17 6 2.8525 -7.9001 -1.4036 18 7 2.2826 -6.5576 -1.2263 19 6 2.2515 -5.6839 -2.2521 20 8 1.8753 -4.5457 -2.0680 21 6 2.6839 -6.1213 -3.6279 22 6 2.5542 -4.9657 -4.5864 23 6 3.5246 -3.9895 -4.9095 24 7 2.9707 -3.1946 -5.7789 25 8 1.8361 -3.5296 -6.0289 26 6 1.4826 -4.6245 -5.3413 27 6 0.0122 -4.7305 -1.1199 28 6 -1.0124 -5.2334 -0.0893 29 6 -0.0951 -4.6426 0.9943 30 1 -0.4850 0.8401 0.0004 31 1 0.3555 -2.3880 -0.0005 32 1 2.6845 -3.7147 0.8895 33 1 2.6846 -3.7146 -0.8905 34 1 0.3920 -7.0307 1.5393 35 1 -0.1288 -7.2213 -0.1523 36 1 2.2485 -8.6383 1.1364 37 1 0.6625 -9.3769 0.8103 38 1 2.2634 -9.9325 -0.9890 39 1 0.9545 -8.9010 -1.6158 40 1 3.7546 -7.9968 -0.7994 41 1 3.0953 -8.0582 -2.4543 42 1 3.7222 -6.4514 -3.5945 43 1 2.0519 -6.9437 -3.9631 44 1 4.5268 -3.9176 -4.5135 45 1 0.5309 -5.1336 -5.3806 46 1 0.1859 -5.4282 -1.9391 47 1 -0.1762 -3.7129 -1.4619 48 1 -1.9810 -4.7383 -0.1589 49 1 -1.0933 -6.3198 -0.0481 50 1 -0.3126 -3.6009 1.2302 51 1 -0.0077 -5.2693 1.8819 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105556570.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:03 Heat of formation + Delta-G solvation = 113.142875 kcal Electronic energy + Delta-G solvation = -33604.963407 eV Core-core repulsion = 29511.022870 eV Total energy + Delta-G solvation = -4093.940537 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -45.82684 -42.67406 -39.33347 -38.17379 -35.90534 -35.48437 -33.72816 -33.09853 -32.84470 -31.78462 -29.81782 -28.77269 -26.62148 -26.16326 -25.22418 -23.98670 -23.65659 -23.16573 -22.74561 -21.51914 -20.05805 -19.27191 -18.98836 -18.72985 -18.40128 -17.77183 -17.00920 -16.72120 -16.59342 -16.18219 -15.88098 -15.71921 -15.21134 -15.14794 -14.78552 -14.62997 -14.35830 -14.32997 -14.14435 -13.83314 -13.50237 -13.48115 -13.24838 -13.03550 -12.99787 -12.86997 -12.68796 -12.41457 -12.20591 -12.18119 -11.96954 -11.72312 -11.62571 -11.51019 -11.34240 -11.21794 -10.80316 -10.75337 -10.67620 -10.62437 -10.38736 -9.78936 -9.25438 -8.71679 -7.93961 -5.16882 0.67407 1.33317 1.37295 1.42233 1.47901 1.86648 2.24012 2.50678 2.53912 3.38057 3.43940 3.63173 3.80747 3.83442 3.86500 3.92752 4.01499 4.10915 4.13755 4.22664 4.24129 4.30436 4.32043 4.38943 4.47012 4.59652 4.64373 4.76907 4.80421 4.82618 4.88094 4.90383 4.95760 4.98230 5.09463 5.15440 5.17945 5.19957 5.23130 5.27027 5.30436 5.35502 5.40074 5.43366 5.55059 5.62490 5.73716 5.87243 5.91850 6.30171 6.70569 7.34723 7.38022 7.58827 8.21652 8.43630 9.30404 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008260 B = 0.005173 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3389.197858 B = 5411.908652 C = 7814.398695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.080 4.080 3 Si 0.969 3.031 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.233 4.233 8 H 0.060 0.940 9 N -0.730 5.730 10 C 0.172 3.828 11 C -0.059 4.059 12 C 0.182 3.818 13 H 0.061 0.939 14 C -0.138 4.138 15 C -0.118 4.118 16 C -0.129 4.129 17 C 0.102 3.898 18 N -0.603 5.603 19 C 0.468 3.532 20 O -0.512 6.512 21 C -0.048 4.048 22 C -0.186 4.186 23 C -0.009 4.009 24 N -0.407 5.407 25 O 0.077 5.923 26 C -0.044 4.044 27 C -0.062 4.062 28 C -0.166 4.166 29 C -0.138 4.138 30 H 0.249 0.751 31 H 0.372 0.628 32 H -0.028 1.028 33 H 0.053 0.947 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.096 0.904 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.112 0.888 42 H 0.128 0.872 43 H 0.141 0.859 44 H 0.196 0.804 45 H 0.248 0.752 46 H 0.069 0.931 47 H 0.031 0.969 48 H 0.043 0.957 49 H 0.125 0.875 50 H 0.044 0.956 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.714 -29.201 -6.070 30.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.272 4.272 3 Si 0.798 3.202 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.365 4.365 8 H 0.078 0.922 9 N -0.373 5.373 10 C 0.046 3.954 11 C -0.060 4.060 12 C 0.078 3.922 13 H 0.079 0.921 14 C -0.176 4.176 15 C -0.156 4.156 16 C -0.167 4.167 17 C -0.020 4.020 18 N -0.338 5.338 19 C 0.257 3.743 20 O -0.389 6.389 21 C -0.088 4.088 22 C -0.191 4.191 23 C -0.188 4.188 24 N -0.114 5.114 25 O 0.015 5.985 26 C -0.126 4.126 27 C -0.100 4.100 28 C -0.202 4.202 29 C -0.176 4.176 30 H 0.057 0.943 31 H 0.206 0.794 32 H -0.011 1.011 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.105 0.895 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.115 0.885 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.130 0.870 42 H 0.146 0.854 43 H 0.159 0.841 44 H 0.213 0.787 45 H 0.264 0.736 46 H 0.087 0.913 47 H 0.050 0.950 48 H 0.062 0.938 49 H 0.142 0.858 50 H 0.063 0.937 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.093 -27.402 -6.656 28.494 hybrid contribution 0.094 1.437 0.888 1.692 sum 4.187 -25.965 -5.768 26.925 Atomic orbital electron populations 1.69821 1.06420 1.25686 1.60414 1.25459 0.96405 1.00705 1.04595 0.85266 0.77289 0.79709 0.77893 1.21321 1.21631 1.20215 1.19527 0.90885 0.86100 1.40031 0.92180 1.42546 1.05397 1.00864 1.88465 1.21189 0.93936 0.84988 0.95275 1.21903 0.93788 0.93623 0.96681 1.20669 0.95239 0.91714 0.84582 0.92117 1.22452 0.98298 0.94462 1.02360 1.21554 1.00850 0.95501 0.97694 1.21910 0.99379 0.99150 0.96280 1.22057 0.96373 0.79577 1.03966 1.48000 1.61057 1.15338 1.09391 1.21058 0.80391 0.85538 0.87270 1.91087 1.44447 1.20356 1.82978 1.20017 1.06310 0.94837 0.87633 1.21042 0.93728 1.01556 1.02750 1.25290 1.03442 0.93057 0.96984 1.73828 0.94283 1.23267 1.19999 1.84741 1.23046 1.37295 1.53444 1.26468 1.02167 0.88984 0.94942 1.22595 0.93107 0.98992 0.95327 1.23738 0.96925 1.02320 0.97248 1.22995 0.97330 0.99799 0.97507 0.94262 0.79380 1.01089 0.93022 0.90800 0.89486 0.91885 0.90486 0.88537 0.91168 0.90854 0.86979 0.85429 0.84127 0.78739 0.73568 0.91286 0.94991 0.93784 0.85797 0.93720 0.90320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -65.05 13.06 21.65 0.28 -64.77 16 2 C -0.08 -5.10 5.50 84.86 0.47 -4.64 16 3 Si 0.97 51.24 29.55 68.60 2.03 53.27 16 4 H -0.29 -14.92 7.11 99.48 0.71 -14.21 16 5 H -0.29 -15.15 7.11 99.48 0.71 -14.44 16 6 H -0.28 -13.90 7.11 99.48 0.71 -13.19 16 7 C -0.23 -14.76 9.99 84.03 0.84 -13.92 16 8 H 0.06 3.74 7.83 -2.91 -0.02 3.72 16 9 N -0.73 -42.29 4.78 -343.43 -1.64 -43.93 16 10 C 0.17 8.09 5.10 86.38 0.44 8.53 16 11 C -0.06 -2.07 0.67 -51.65 -0.03 -2.10 16 12 C 0.18 4.39 2.68 44.98 0.12 4.51 16 13 H 0.06 1.57 8.10 -2.39 -0.02 1.55 16 14 C -0.14 -2.37 3.90 30.68 0.12 -2.25 16 15 C -0.12 -1.24 5.88 30.62 0.18 -1.06 16 16 C -0.13 -0.87 6.08 30.67 0.19 -0.68 16 17 C 0.10 0.90 6.35 86.36 0.55 1.45 16 18 N -0.60 -11.34 2.90 -795.02 -2.30 -13.64 16 19 C 0.47 11.10 5.80 87.66 0.51 11.61 16 20 O -0.51 -18.59 7.04 -3.04 -0.02 -18.61 16 21 C -0.05 -0.70 4.64 29.10 0.14 -0.57 16 22 C -0.19 -4.25 4.82 -19.73 -0.10 -4.34 16 23 C -0.01 -0.26 12.16 85.71 1.04 0.78 16 24 N -0.41 -13.86 12.07 -59.27 -0.72 -14.57 16 25 O 0.08 2.35 11.20 71.64 0.80 3.15 16 26 C -0.04 -1.00 12.26 67.17 0.82 -0.18 16 27 C -0.06 -2.24 4.40 31.12 0.14 -2.10 16 28 C -0.17 -5.02 7.41 31.12 0.23 -4.79 16 29 C -0.14 -4.93 6.55 31.12 0.20 -4.73 16 30 H 0.25 16.09 8.31 -92.70 -0.77 15.32 16 31 H 0.37 22.79 4.99 -92.71 -0.46 22.33 16 32 H -0.03 -1.40 8.14 -2.39 -0.02 -1.42 16 33 H 0.05 2.61 5.14 -55.60 -0.29 2.32 16 34 H 0.07 1.33 6.47 -2.39 -0.02 1.32 16 35 H 0.09 1.52 4.81 -2.39 -0.01 1.51 16 36 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 39 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 40 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.11 0.37 5.93 -2.39 -0.01 0.35 16 42 H 0.13 1.18 7.71 -2.39 -0.02 1.16 16 43 H 0.14 0.94 7.93 -2.39 -0.02 0.92 16 44 H 0.20 4.78 8.06 -2.91 -0.02 4.75 16 45 H 0.25 3.27 8.06 -2.91 -0.02 3.24 16 46 H 0.07 2.14 5.55 -2.39 -0.01 2.12 16 47 H 0.03 1.53 6.81 -2.39 -0.02 1.51 16 48 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 49 H 0.12 2.78 4.56 -2.38 -0.01 2.77 16 50 H 0.04 2.05 6.37 -2.39 -0.02 2.04 16 51 H 0.08 2.35 6.49 -2.38 -0.02 2.34 16 Total: -1.00 -88.10 376.20 4.51 -83.58 By element: Atomic # 1 Polarization: 29.78 SS G_CDS: 0.23 Total: 30.01 kcal Atomic # 6 Polarization: -20.34 SS G_CDS: 5.85 Total: -14.48 kcal Atomic # 7 Polarization: -132.54 SS G_CDS: -4.38 Total: -136.92 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: 0.78 Total: -15.46 kcal Atomic # 14 Polarization: 51.24 SS G_CDS: 2.03 Total: 53.27 kcal Total: -88.10 4.51 -83.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105556570.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.727 kcal (2) G-P(sol) polarization free energy of solvation -88.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds