Wall clock time and date at job start Wed Apr 1 2020 05:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50698 * 110.34500 * 2 1 4 4 O 1.21288 * 119.99597 * 119.16855 * 3 2 1 5 5 N 1.34768 * 119.99882 * 299.16273 * 3 2 1 6 6 C 1.46508 * 120.00012 * 179.97438 * 5 3 2 7 7 H 1.08997 * 110.54215 * 35.30871 * 6 5 3 8 8 C 1.56672 * 110.47399 * 158.23098 * 6 5 3 9 9 C 1.55855 * 102.66536 * 118.86949 * 8 6 5 10 10 H 1.08998 * 115.57965 * 159.16523 * 9 8 6 11 11 C 1.55851 * 105.03138 * 287.79420 * 9 8 6 12 12 C 1.54833 * 103.52108 * 72.48465 * 11 9 8 13 13 C 1.55843 * 110.61152 * 272.44470 * 6 5 3 14 14 H 1.09002 * 115.58819 * 81.69023 * 13 6 5 15 15 N 1.50654 * 101.73233 * 32.74600 * 9 8 6 16 16 C 1.46897 * 110.99964 * 190.28784 * 15 9 8 17 17 C 1.50699 * 109.47064 * 176.03608 * 16 15 9 18 18 O 1.21292 * 120.00121 * 6.23937 * 17 16 15 19 19 N 1.34775 * 120.00002 * 186.24168 * 17 16 15 20 20 C 1.37095 * 120.00385 * 179.97438 * 19 17 16 21 21 H 1.08000 * 119.99972 * 0.02562 * 20 19 17 22 22 C 1.38952 * 120.00599 * 179.97438 * 20 19 17 23 23 N 1.31414 * 119.99515 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00222 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46899 * 60.00494 * 24 22 20 26 26 H 1.48505 * 109.46805 * 180.02562 * 24 22 20 27 27 H 1.48492 * 109.46937 * 300.00206 * 24 22 20 28 28 C 1.51104 * 110.38650 * 237.70991 * 2 1 3 29 29 C 1.30529 * 111.10628 * 224.63912 * 28 2 1 30 30 C 1.51102 * 111.10171 * 359.97438 * 29 28 2 31 31 C 1.54636 * 110.48106 * 122.35440 * 2 1 3 32 32 H 1.09001 * 109.47080 * 59.29927 * 1 2 3 33 33 H 1.09007 * 109.47396 * 179.29636 * 1 2 3 34 34 H 1.09002 * 109.47157 * 299.29678 * 1 2 3 35 35 H 0.96999 * 120.00510 * 0.02562 * 5 3 2 36 36 H 1.09003 * 110.77940 * 0.75787 * 8 6 5 37 37 H 1.08993 * 111.25256 * 237.20015 * 8 6 5 38 38 H 1.09001 * 110.61286 * 190.99486 * 11 9 8 39 39 H 1.08998 * 110.61231 * 313.97103 * 11 9 8 40 40 H 1.08997 * 110.61015 * 118.50748 * 12 11 9 41 41 H 1.08997 * 110.61250 * 241.49115 * 12 11 9 42 42 H 1.09004 * 109.46904 * 296.03234 * 16 15 9 43 43 H 1.09000 * 109.47217 * 56.03274 * 16 15 9 44 44 H 0.97006 * 120.00255 * 359.97438 * 19 17 16 45 45 H 0.96995 * 119.99549 * 179.97438 * 23 22 20 46 46 H 1.08000 * 124.44498 * 44.62522 * 28 2 1 47 47 H 1.07996 * 124.44518 * 179.97438 * 29 28 2 48 48 H 1.09008 * 110.37986 * 135.24600 * 30 29 28 49 49 H 1.08991 * 110.39165 * 257.51163 * 30 29 28 50 50 H 1.08999 * 111.03431 * 261.52089 * 31 2 1 51 51 H 1.08998 * 111.04334 * 25.46407 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0539 1.4130 0.0000 4 8 2.7447 1.8035 0.9172 5 7 1.7549 2.2425 -1.0192 6 6 2.2638 3.6163 -1.0189 7 1 3.2602 3.6550 -0.5788 8 6 2.2774 4.1960 -2.4744 9 6 1.3118 5.4145 -2.3660 10 1 1.4259 6.1755 -3.1380 11 6 -0.1115 4.7924 -2.2394 12 6 -0.1269 4.2129 -0.8037 13 6 1.2892 4.5622 -0.2546 14 1 1.3865 4.5609 0.8310 15 7 1.5533 5.8718 -0.9510 16 6 0.5605 6.8757 -0.5456 17 6 0.7733 7.2366 0.9020 18 8 1.7312 6.7966 1.5022 19 7 -0.1006 8.0481 1.5298 20 6 0.0927 8.3760 2.8468 21 1 0.9455 7.9843 3.3813 22 6 -0.8080 9.2131 3.4939 23 7 -1.8455 9.6901 2.8435 24 14 -0.5449 9.6593 5.2887 25 1 0.7603 10.3510 5.4406 26 1 -1.6375 10.5579 5.7406 27 1 -0.5490 8.4233 6.1117 28 6 2.0563 -0.7566 -1.1974 29 6 3.0322 -1.5541 -0.8576 30 6 3.3199 -1.4617 0.6229 31 6 2.0710 -0.7752 1.2237 32 1 -0.3633 0.5247 -0.8836 33 1 -0.3634 -1.0276 -0.0126 34 1 -0.3633 0.5029 0.8962 35 1 1.2022 1.9302 -1.7526 36 1 1.8937 3.4644 -3.1856 37 1 3.2771 4.5228 -2.7602 38 1 -0.8772 5.5600 -2.3517 39 1 -0.2507 3.9999 -2.9747 40 1 -0.9002 4.6933 -0.2043 41 1 -0.2737 3.1331 -0.8273 42 1 0.6725 7.7673 -1.1625 43 1 -0.4421 6.4681 -0.6748 44 1 -0.8665 8.4003 1.0497 45 1 -2.4744 10.2742 3.2953 46 1 1.6749 -0.6516 -2.2023 47 1 3.5642 -2.1956 -1.5445 48 1 3.4465 -2.4575 1.0479 49 1 4.2099 -0.8581 0.8000 50 1 2.3484 -0.0932 2.0275 51 1 1.3475 -1.5129 1.5709 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001109607353.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:17 Heat of formation + Delta-G solvation = -21.121305 kcal Electronic energy + Delta-G solvation = -31922.436829 eV Core-core repulsion = 27822.674161 eV Total energy + Delta-G solvation = -4099.762668 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.29104 -40.27824 -37.92050 -37.43814 -34.56230 -33.83640 -31.99281 -31.24536 -30.76781 -30.04075 -29.24692 -28.64158 -26.41263 -25.24610 -24.14026 -22.89829 -21.80749 -20.38460 -19.97861 -19.54625 -19.06105 -18.80102 -17.76172 -17.27970 -16.30463 -16.10633 -15.93546 -15.66390 -15.37467 -14.72173 -14.52148 -14.41354 -14.05133 -13.75330 -13.55345 -13.35872 -13.07598 -12.90807 -12.54845 -12.46837 -12.22180 -12.10762 -11.98928 -11.94819 -11.73987 -11.64201 -11.41235 -11.38821 -11.36307 -11.28508 -11.07975 -10.97941 -10.84823 -10.65730 -10.40190 -10.16641 -10.15695 -10.02255 -9.43032 -9.12105 -8.93018 -8.46218 -8.08193 -7.90294 -6.36983 -3.77294 1.85466 2.68210 3.12684 3.24002 3.28689 3.33963 3.97701 4.00497 4.19658 4.25608 4.35215 4.50556 4.61401 4.65690 4.75553 4.86377 4.97274 5.05839 5.11051 5.15550 5.23326 5.24200 5.30248 5.31767 5.36708 5.40731 5.43326 5.44967 5.58688 5.67166 5.68689 5.74323 5.78316 5.82567 5.88988 5.90590 5.99636 6.09196 6.09339 6.12435 6.13980 6.25345 6.32175 6.47630 6.53331 6.54777 6.91200 7.22576 7.48470 7.59956 8.11516 8.25504 8.67570 9.23678 9.60091 10.12807 10.80964 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013508 B = 0.002776 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.293042 B =10084.088788 C =11270.649289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.058 4.058 3 C 0.528 3.472 4 O -0.526 6.526 5 N -0.716 5.716 6 C 0.147 3.853 7 H 0.099 0.901 8 C -0.115 4.115 9 C 0.039 3.961 10 H 0.114 0.886 11 C -0.153 4.153 12 C -0.159 4.159 13 C 0.054 3.946 14 H 0.126 0.874 15 N -0.462 5.462 16 C 0.023 3.977 17 C 0.445 3.555 18 O -0.575 6.575 19 N -0.566 5.566 20 C -0.297 4.297 21 H 0.102 0.898 22 C 0.022 3.978 23 N -0.904 5.904 24 Si 0.929 3.071 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.274 1.274 28 C -0.164 4.164 29 C -0.147 4.147 30 C -0.105 4.105 31 C -0.109 4.109 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.396 0.604 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.088 0.912 43 H 0.059 0.941 44 H 0.391 0.609 45 H 0.271 0.729 46 H 0.128 0.872 47 H 0.127 0.873 48 H 0.072 0.928 49 H 0.080 0.920 50 H 0.093 0.907 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.028 -20.598 -14.851 25.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.062 4.062 3 C 0.313 3.687 4 O -0.401 6.401 5 N -0.367 5.367 6 C 0.041 3.959 7 H 0.117 0.883 8 C -0.153 4.153 9 C -0.070 4.070 10 H 0.132 0.868 11 C -0.192 4.192 12 C -0.198 4.198 13 C -0.056 4.056 14 H 0.144 0.856 15 N -0.184 5.184 16 C -0.109 4.109 17 C 0.230 3.770 18 O -0.458 6.458 19 N -0.204 5.204 20 C -0.426 4.426 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.546 5.546 24 Si 0.756 3.244 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.183 4.183 29 C -0.165 4.165 30 C -0.141 4.141 31 C -0.147 4.147 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.230 0.770 36 H 0.091 0.909 37 H 0.100 0.900 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.106 0.894 43 H 0.077 0.923 44 H 0.224 0.776 45 H 0.081 0.919 46 H 0.146 0.854 47 H 0.145 0.855 48 H 0.090 0.910 49 H 0.099 0.901 50 H 0.112 0.888 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.625 -20.163 -13.563 24.569 hybrid contribution -1.729 0.162 -0.080 1.738 sum 1.896 -20.001 -13.642 24.285 Atomic orbital electron populations 1.21795 0.92048 1.02806 1.02675 1.20645 0.97120 0.92427 0.95983 1.20305 0.80036 0.86483 0.81881 1.90737 1.37602 1.76739 1.35065 1.46040 1.53888 1.12465 1.24333 1.22279 0.98583 0.79363 0.95631 0.88345 1.23158 1.00565 0.96446 0.95136 1.24519 0.93288 0.95881 0.93317 0.86838 1.23306 0.98525 1.00343 0.97056 1.23294 0.99386 1.01267 0.95813 1.24754 0.92087 0.88390 1.00330 0.85573 1.67552 1.43842 1.05807 1.01204 1.22153 0.95020 0.96710 0.97003 1.19732 0.85429 0.84049 0.87816 1.90541 1.31306 1.56688 1.67276 1.41855 1.24128 1.42778 1.11598 1.19649 1.10129 1.26473 0.86376 0.88028 1.25237 0.95483 0.96927 1.00315 1.69606 1.13461 1.33958 1.37584 0.85937 0.77833 0.78479 0.82105 1.19894 1.21020 1.19931 1.23036 0.99063 0.98438 0.97725 1.23404 0.97109 0.98531 0.97459 1.21421 0.99142 1.00920 0.92663 1.22497 0.96674 0.98775 0.96734 0.92210 0.91326 0.91624 0.76981 0.90948 0.90030 0.91308 0.91483 0.91284 0.91091 0.89379 0.92348 0.77610 0.91924 0.85439 0.85549 0.90951 0.90138 0.88837 0.90491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 8.42 37.15 0.31 -0.78 16 2 C -0.06 -0.56 0.73 -155.76 -0.11 -0.68 16 3 C 0.53 6.86 6.54 -10.99 -0.07 6.78 16 4 O -0.53 -9.32 15.14 5.55 0.08 -9.24 16 5 N -0.72 -7.85 3.52 -50.44 -0.18 -8.03 16 6 C 0.15 1.98 3.13 -64.43 -0.20 1.78 16 7 H 0.10 1.62 7.65 -51.93 -0.40 1.22 16 8 C -0.11 -1.20 6.33 -23.23 -0.15 -1.35 16 9 C 0.04 0.46 4.93 -62.55 -0.31 0.15 16 10 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 11 C -0.15 -1.65 5.62 -24.24 -0.14 -1.79 16 12 C -0.16 -2.11 5.51 -24.25 -0.13 -2.25 16 13 C 0.05 0.90 4.08 -62.56 -0.26 0.64 16 14 H 0.13 2.72 7.04 -51.93 -0.37 2.36 16 15 N -0.46 -7.76 5.34 -207.00 -1.11 -8.86 16 16 C 0.02 0.42 5.12 -4.98 -0.03 0.40 16 17 C 0.44 10.80 7.46 -10.99 -0.08 10.72 16 18 O -0.57 -16.15 14.61 5.55 0.08 -16.06 16 19 N -0.57 -14.69 5.29 -10.96 -0.06 -14.75 16 20 C -0.30 -8.47 9.68 -14.93 -0.14 -8.62 16 21 H 0.10 3.06 7.16 -52.49 -0.38 2.68 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -25.02 13.05 55.50 0.72 -24.29 16 24 Si 0.93 21.61 29.55 -169.99 -5.02 16.58 16 25 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 28 C -0.16 -1.29 9.29 -35.70 -0.33 -1.63 16 29 C -0.15 -1.16 10.78 -35.70 -0.38 -1.55 16 30 C -0.10 -0.93 6.81 -26.82 -0.18 -1.12 16 31 C -0.11 -1.09 6.06 -25.00 -0.15 -1.24 16 32 H 0.06 0.40 7.68 -51.93 -0.40 0.00 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.40 3.18 7.48 -40.82 -0.31 2.87 16 36 H 0.07 0.57 7.36 -51.93 -0.38 0.18 16 37 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.07 0.76 7.32 -51.93 -0.38 0.38 16 39 H 0.07 0.57 7.79 -51.93 -0.40 0.16 16 40 H 0.07 1.05 7.18 -51.93 -0.37 0.68 16 41 H 0.07 0.82 6.45 -51.93 -0.33 0.48 16 42 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 43 H 0.06 0.97 4.77 -51.93 -0.25 0.72 16 44 H 0.39 9.68 7.90 -40.82 -0.32 9.36 16 45 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 46 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 47 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 48 H 0.07 0.53 8.14 -51.92 -0.42 0.10 16 49 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 50 H 0.09 1.16 6.90 -51.93 -0.36 0.80 16 51 H 0.08 0.64 7.92 -51.93 -0.41 0.23 16 LS Contribution 395.81 15.07 5.96 5.96 Total: -1.00 -34.12 395.81 -9.96 -44.08 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: -8.00 Total: 14.61 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: -2.45 Total: -0.02 kcal Atomic # 7 Polarization: -55.31 SS G_CDS: -0.62 Total: -55.93 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: 0.17 Total: -25.30 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.12 -9.96 -44.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109607353.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.961 kcal (2) G-P(sol) polarization free energy of solvation -34.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds