Wall clock time and date at job start Wed Apr 1 2020 05:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.51581 * 135.78320 * 2 1 4 4 C 1.53841 * 86.75678 * 154.84806 * 3 2 1 5 5 C 1.52995 * 113.65852 * 270.22086 * 4 3 2 6 6 C 1.50700 * 113.65496 * 139.26693 * 4 3 2 7 7 O 1.21279 * 120.00064 * 0.02562 * 6 4 3 8 8 N 1.34777 * 119.99702 * 179.97438 * 6 4 3 9 9 C 1.46498 * 120.00040 * 180.02562 * 8 6 4 10 10 H 1.09000 * 110.67091 * 36.99605 * 9 8 6 11 11 C 1.54839 * 110.61581 * 159.94795 * 9 8 6 12 12 C 1.55845 * 103.51907 * 118.50617 * 11 9 8 13 13 H 1.09009 * 115.57875 * 158.89304 * 12 11 9 14 14 C 1.55845 * 105.03357 * 288.26938 * 12 11 9 15 15 C 1.54832 * 103.51869 * 71.73335 * 14 12 11 16 16 C 1.55852 * 103.51657 * 359.97438 * 15 14 12 17 17 H 1.09003 * 116.14731 * 159.22863 * 16 15 14 18 18 N 1.50642 * 101.03094 * 32.99354 * 12 11 9 19 19 C 1.46905 * 110.99976 * 62.34456 * 18 12 11 20 20 C 1.50704 * 109.46814 * 61.91057 * 19 18 12 21 21 O 1.21288 * 120.00125 * 359.97438 * 20 19 18 22 22 N 1.34783 * 119.99903 * 180.02562 * 20 19 18 23 23 C 1.37093 * 119.99784 * 179.97438 * 22 20 19 24 24 H 1.07999 * 120.00163 * 359.97438 * 23 22 20 25 25 C 1.38956 * 119.99836 * 179.97438 * 23 22 20 26 26 N 1.31418 * 119.99996 * 359.97438 * 25 23 22 27 27 Si 1.86798 * 120.00050 * 180.02562 * 25 23 22 28 28 H 1.48502 * 109.47098 * 89.99698 * 27 25 23 29 29 H 1.48497 * 109.47092 * 329.99659 * 27 25 23 30 30 H 1.48499 * 109.47001 * 209.99971 * 27 25 23 31 31 C 1.51579 * 135.78151 * 180.02562 * 2 1 3 32 32 H 1.08006 * 119.99733 * 359.97438 * 1 2 3 33 33 H 1.07998 * 119.99978 * 180.02562 * 1 2 3 34 34 H 1.09000 * 113.66512 * 40.38401 * 3 2 1 35 35 H 1.09007 * 113.74936 * 269.32681 * 3 2 1 36 36 H 1.09003 * 109.46765 * 298.33273 * 5 4 3 37 37 H 1.09001 * 109.46730 * 58.33639 * 5 4 3 38 38 H 1.08993 * 109.46962 * 178.33288 * 5 4 3 39 39 H 0.97000 * 120.00346 * 0.02562 * 8 6 4 40 40 H 1.09002 * 110.61009 * 237.01796 * 11 9 8 41 41 H 1.09000 * 110.61028 * 359.84080 * 11 9 8 42 42 H 1.08996 * 110.61467 * 190.23854 * 14 12 11 43 43 H 1.09001 * 110.61721 * 313.22449 * 14 12 11 44 44 H 1.09000 * 110.61484 * 241.49067 * 15 14 12 45 45 H 1.08999 * 110.61804 * 118.50512 * 15 14 12 46 46 H 1.09000 * 109.46920 * 301.91156 * 19 18 12 47 47 H 1.08999 * 109.47077 * 181.90573 * 19 18 12 48 48 H 0.97001 * 119.99674 * 359.97438 * 22 20 19 49 49 H 0.97004 * 119.99678 * 0.02562 * 26 25 23 50 50 H 1.08996 * 113.66868 * 90.68303 * 31 2 1 51 51 H 1.09002 * 113.66858 * 319.61418 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.3964 1.0571 0.0000 4 6 3.3036 -0.0001 0.6528 5 6 3.2462 0.0014 2.1817 6 6 4.7130 0.0000 0.1192 7 8 5.0343 0.7882 -0.7447 8 7 5.6166 -0.8754 0.6027 9 6 6.9868 -0.8750 0.0845 10 1 7.3188 0.1419 -0.1249 11 6 7.9473 -1.5674 1.0823 12 6 8.5023 -2.7782 0.2732 13 1 9.4435 -3.1935 0.6338 14 6 7.3085 -3.7742 0.1661 15 6 6.3481 -3.0819 -0.8318 16 6 7.0898 -1.7599 -1.1937 17 1 6.7881 -1.2791 -2.1243 18 7 8.5269 -2.2067 -1.1204 19 6 9.4398 -1.0587 -1.2026 20 6 10.8420 -1.5080 -0.8816 21 8 11.0594 -2.6701 -0.6106 22 7 11.8544 -0.6183 -0.8948 23 6 13.1299 -1.0270 -0.6023 24 1 13.3234 -2.0618 -0.3609 25 6 14.1737 -0.1099 -0.6164 26 7 13.9383 1.1491 -0.9106 27 14 15.9118 -0.6668 -0.2185 28 1 16.5947 -1.0884 -1.4680 29 1 15.8608 -1.8102 0.7277 30 1 16.6615 0.4553 0.4011 31 6 2.3964 -1.0571 -0.0005 32 1 -0.5400 0.9354 0.0004 33 1 -0.5400 -0.9353 0.0004 34 1 2.1797 1.9072 0.6468 35 1 2.7192 1.3548 -0.9977 36 1 3.5892 0.9655 2.5572 37 1 2.2203 -0.1713 2.5069 38 1 3.8884 -0.7891 2.5701 39 1 5.3597 -1.5056 1.2939 40 1 8.7552 -0.8936 1.3675 41 1 7.4043 -1.9083 1.9638 42 1 7.6436 -4.7340 -0.2270 43 1 6.8273 -3.9023 1.1357 44 1 5.3909 -2.8669 -0.3568 45 1 6.2071 -3.6986 -1.7195 46 1 9.1300 -0.2963 -0.4879 47 1 9.4128 -0.6445 -2.2105 48 1 11.6804 0.3111 -1.1113 49 1 13.0357 1.4382 -1.1176 50 1 2.7183 -1.3533 -0.9988 51 1 2.1797 -1.9075 0.6460 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001109697057.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:26 Heat of formation + Delta-G solvation = 5.663886 kcal Electronic energy + Delta-G solvation = -31594.387407 eV Core-core repulsion = 27495.786232 eV Total energy + Delta-G solvation = -4098.601175 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.50587 -40.49505 -38.21923 -37.74696 -34.58900 -34.17358 -32.03947 -31.91481 -30.97595 -29.78832 -28.69463 -28.02076 -26.41452 -26.28993 -24.06632 -23.76493 -22.07489 -20.61915 -19.99691 -19.51462 -19.18309 -18.14024 -17.86821 -17.24887 -16.68534 -16.05793 -15.97356 -15.84182 -15.37843 -15.04059 -14.83384 -14.48307 -14.29941 -14.06346 -13.76912 -13.72328 -13.23243 -12.91910 -12.88789 -12.73173 -12.55660 -12.25486 -12.22009 -12.04576 -11.83608 -11.75588 -11.70605 -11.39069 -11.31404 -11.18758 -10.97412 -10.77420 -10.72123 -10.61735 -10.22172 -10.16860 -9.90369 -9.85280 -9.52114 -9.48123 -9.35502 -8.46957 -8.13127 -8.01077 -6.74749 -3.87983 1.81489 2.40264 2.95579 3.31108 3.34839 3.54008 3.83746 3.90229 3.93407 4.05386 4.11503 4.27718 4.43637 4.49708 4.58421 4.66210 4.74851 4.91274 4.99459 5.11908 5.14447 5.17529 5.22283 5.26165 5.28284 5.32085 5.34359 5.39084 5.41338 5.47861 5.54238 5.60282 5.62380 5.71286 5.78936 5.81850 5.88558 5.92420 5.95291 6.02400 6.03312 6.16207 6.19611 6.36049 6.48231 6.50974 6.84952 7.14911 7.29997 7.81188 8.03670 8.08591 8.60616 8.80476 9.48196 9.88337 10.68610 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.022053 B = 0.002276 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.380556 B =12301.427979 C =12911.305518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.147 4.147 3 C -0.082 4.082 4 C -0.106 4.106 5 C -0.126 4.126 6 C 0.528 3.472 7 O -0.535 6.535 8 N -0.711 5.711 9 C 0.112 3.888 10 H 0.092 0.908 11 C -0.163 4.163 12 C 0.057 3.943 13 H 0.138 0.862 14 C -0.116 4.116 15 C -0.111 4.111 16 C 0.035 3.965 17 H 0.113 0.887 18 N -0.464 5.464 19 C 0.020 3.980 20 C 0.448 3.552 21 O -0.575 6.575 22 N -0.575 5.575 23 C -0.381 4.381 24 H 0.099 0.901 25 C -0.010 4.010 26 N -0.901 5.901 27 Si 1.094 2.906 28 H -0.284 1.284 29 H -0.284 1.284 30 H -0.281 1.281 31 C -0.087 4.087 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.078 0.922 35 H 0.107 0.893 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.399 0.601 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.063 0.937 44 H 0.066 0.934 45 H 0.069 0.931 46 H 0.055 0.945 47 H 0.089 0.911 48 H 0.375 0.625 49 H 0.262 0.738 50 H 0.097 0.903 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.148 -3.169 5.826 26.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.147 4.147 3 C -0.119 4.119 4 C -0.109 4.109 5 C -0.184 4.184 6 C 0.314 3.686 7 O -0.411 6.411 8 N -0.362 5.362 9 C 0.005 3.995 10 H 0.110 0.890 11 C -0.202 4.202 12 C -0.051 4.051 13 H 0.156 0.844 14 C -0.154 4.154 15 C -0.149 4.149 16 C -0.075 4.075 17 H 0.131 0.869 18 N -0.186 5.186 19 C -0.112 4.112 20 C 0.234 3.766 21 O -0.459 6.459 22 N -0.213 5.213 23 C -0.510 4.510 24 H 0.117 0.883 25 C -0.213 4.213 26 N -0.540 5.540 27 Si 0.920 3.080 28 H -0.211 1.211 29 H -0.210 1.210 30 H -0.207 1.207 31 C -0.125 4.125 32 H 0.124 0.876 33 H 0.124 0.876 34 H 0.096 0.904 35 H 0.125 0.875 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.234 0.766 40 H 0.097 0.903 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.081 0.919 44 H 0.085 0.915 45 H 0.087 0.913 46 H 0.073 0.927 47 H 0.107 0.893 48 H 0.208 0.792 49 H 0.073 0.927 50 H 0.115 0.885 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -23.914 -3.258 5.066 24.661 hybrid contribution -2.031 0.541 0.615 2.190 sum -25.945 -2.717 5.681 26.698 Atomic orbital electron populations 1.22881 0.93358 1.02224 1.02344 1.22772 0.93837 0.98000 1.00136 1.22249 0.91915 0.95465 1.02258 1.21972 0.91312 1.00406 0.97212 1.21577 1.02937 1.02762 0.91102 1.20287 0.86381 0.80020 0.81902 1.90708 1.79830 1.39240 1.31340 1.46067 1.10753 1.37437 1.41984 1.22781 0.81106 1.00944 0.94639 0.88999 1.23577 0.98769 0.99536 0.98346 1.24674 0.99185 0.93690 0.87544 0.84407 1.22614 0.95336 0.99042 0.98368 1.22519 0.97444 0.95433 0.99515 1.24829 0.90578 0.95056 0.97046 0.86942 1.67565 1.01341 1.23643 1.26069 1.22168 0.93366 0.93408 1.02220 1.19594 0.85553 0.86732 0.84739 1.90473 1.84039 1.17877 1.53492 1.41950 1.07680 1.09679 1.61962 1.20552 0.83798 0.98797 1.47894 0.88272 1.26514 1.05220 0.93396 0.96159 1.70870 1.23324 1.15829 1.43994 0.83091 0.72800 0.75251 0.76876 1.21098 1.20958 1.20679 1.22289 0.93013 0.95736 1.01426 0.87555 0.87615 0.90377 0.87517 0.91517 0.91149 0.91892 0.76596 0.90346 0.90565 0.90912 0.91878 0.91519 0.91272 0.92674 0.89302 0.79174 0.92694 0.88486 0.89990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.06 14.71 29.01 0.43 -0.64 16 2 C -0.15 -1.08 6.60 -100.29 -0.66 -1.74 16 3 C -0.08 -0.70 6.98 -27.01 -0.19 -0.89 16 4 C -0.11 -0.85 1.27 -154.86 -0.20 -1.05 16 5 C -0.13 -0.78 8.99 37.16 0.33 -0.45 16 6 C 0.53 5.84 6.93 -10.99 -0.08 5.77 16 7 O -0.54 -8.13 15.63 5.56 0.09 -8.04 16 8 N -0.71 -6.93 3.52 -51.43 -0.18 -7.11 16 9 C 0.11 1.39 2.26 -65.47 -0.15 1.24 16 10 H 0.09 1.35 6.75 -51.93 -0.35 1.00 16 11 C -0.16 -2.09 5.39 -24.24 -0.13 -2.22 16 12 C 0.06 0.87 4.13 -62.57 -0.26 0.62 16 13 H 0.14 2.59 6.26 -51.92 -0.33 2.26 16 14 C -0.12 -1.37 6.43 -24.25 -0.16 -1.53 16 15 C -0.11 -1.25 6.32 -24.24 -0.15 -1.40 16 16 C 0.03 0.47 4.83 -62.57 -0.30 0.17 16 17 H 0.11 1.59 8.14 -51.93 -0.42 1.16 16 18 N -0.46 -7.77 5.44 -207.02 -1.13 -8.90 16 19 C 0.02 0.37 5.24 -4.97 -0.03 0.35 16 20 C 0.45 10.55 7.53 -10.98 -0.08 10.47 16 21 O -0.57 -15.27 13.73 5.55 0.08 -15.19 16 22 N -0.57 -14.54 5.28 -10.96 -0.06 -14.60 16 23 C -0.38 -10.71 9.68 -14.93 -0.14 -10.85 16 24 H 0.10 2.94 7.16 -52.49 -0.38 2.57 16 25 C -0.01 -0.28 5.50 -17.46 -0.10 -0.38 16 26 N -0.90 -25.48 13.68 55.50 0.76 -24.72 16 27 Si 1.09 24.45 29.92 -169.99 -5.09 19.36 16 28 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 29 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 30 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 31 C -0.09 -0.61 7.18 -27.00 -0.19 -0.81 16 32 H 0.11 0.57 8.06 -52.48 -0.42 0.15 16 33 H 0.11 0.54 8.06 -52.49 -0.42 0.11 16 34 H 0.08 0.61 8.10 -51.93 -0.42 0.19 16 35 H 0.11 1.09 7.42 -51.93 -0.39 0.70 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.38 7.70 -51.93 -0.40 -0.02 16 38 H 0.06 0.32 7.04 -51.93 -0.37 -0.05 16 39 H 0.40 2.92 6.91 -40.82 -0.28 2.64 16 40 H 0.08 1.14 7.37 -51.93 -0.38 0.76 16 41 H 0.08 0.78 7.35 -51.93 -0.38 0.40 16 42 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.06 0.60 7.82 -51.93 -0.41 0.19 16 44 H 0.07 0.61 6.48 -51.93 -0.34 0.28 16 45 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.06 0.93 4.87 -51.93 -0.25 0.68 16 47 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 48 H 0.38 8.90 6.73 -40.82 -0.27 8.62 16 49 H 0.26 7.15 6.78 -40.82 -0.28 6.87 16 50 H 0.10 0.75 8.09 -51.93 -0.42 0.33 16 51 H 0.08 0.45 8.10 -51.93 -0.42 0.03 16 LS Contribution 396.25 15.07 5.97 5.97 Total: -1.00 -33.50 396.25 -9.42 -42.92 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: -7.81 Total: 13.63 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: -2.05 Total: -3.34 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: -0.61 Total: -55.33 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: 0.16 Total: -23.23 kcal Atomic # 14 Polarization: 24.45 SS G_CDS: -5.09 Total: 19.36 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.50 -9.42 -42.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109697057.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.588 kcal (2) G-P(sol) polarization free energy of solvation -33.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds