Wall clock time and date at job start Wed Apr 1 2020 05:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.51581 * 135.78320 * 2 1 4 4 C 1.53841 * 86.75678 * 154.84806 * 3 2 1 5 5 C 1.52995 * 113.65852 * 270.22086 * 4 3 2 6 6 C 1.50700 * 113.65496 * 139.26693 * 4 3 2 7 7 O 1.21279 * 120.00064 * 0.02562 * 6 4 3 8 8 N 1.34777 * 119.99702 * 179.97438 * 6 4 3 9 9 C 1.46498 * 120.00040 * 180.02562 * 8 6 4 10 10 H 1.09000 * 110.67091 * 36.99605 * 9 8 6 11 11 C 1.54839 * 110.61581 * 159.94795 * 9 8 6 12 12 C 1.55845 * 103.51907 * 118.50617 * 11 9 8 13 13 H 1.09009 * 115.57875 * 158.89304 * 12 11 9 14 14 C 1.55845 * 105.03357 * 288.26938 * 12 11 9 15 15 C 1.54832 * 103.51869 * 71.73335 * 14 12 11 16 16 C 1.55852 * 103.51657 * 359.97438 * 15 14 12 17 17 H 1.09003 * 116.14731 * 159.22863 * 16 15 14 18 18 N 1.50642 * 101.03094 * 32.99354 * 12 11 9 19 19 C 1.46905 * 110.99976 * 62.34456 * 18 12 11 20 20 C 1.50704 * 109.46814 * 61.91057 * 19 18 12 21 21 O 1.21288 * 120.00125 * 359.97438 * 20 19 18 22 22 N 1.34783 * 119.99903 * 180.02562 * 20 19 18 23 23 C 1.37093 * 119.99784 * 179.97438 * 22 20 19 24 24 H 1.07999 * 120.00163 * 359.97438 * 23 22 20 25 25 C 1.38956 * 119.99836 * 179.97438 * 23 22 20 26 26 N 1.31418 * 119.99996 * 359.97438 * 25 23 22 27 27 Si 1.86798 * 120.00050 * 180.02562 * 25 23 22 28 28 H 1.48502 * 109.47098 * 89.99698 * 27 25 23 29 29 H 1.48497 * 109.47092 * 329.99659 * 27 25 23 30 30 H 1.48499 * 109.47001 * 209.99971 * 27 25 23 31 31 C 1.51579 * 135.78151 * 180.02562 * 2 1 3 32 32 H 1.08006 * 119.99733 * 359.97438 * 1 2 3 33 33 H 1.07998 * 119.99978 * 180.02562 * 1 2 3 34 34 H 1.09000 * 113.66512 * 40.38401 * 3 2 1 35 35 H 1.09007 * 113.74936 * 269.32681 * 3 2 1 36 36 H 1.09003 * 109.46765 * 298.33273 * 5 4 3 37 37 H 1.09001 * 109.46730 * 58.33639 * 5 4 3 38 38 H 1.08993 * 109.46962 * 178.33288 * 5 4 3 39 39 H 0.97000 * 120.00346 * 0.02562 * 8 6 4 40 40 H 1.09002 * 110.61009 * 237.01796 * 11 9 8 41 41 H 1.09000 * 110.61028 * 359.84080 * 11 9 8 42 42 H 1.08996 * 110.61467 * 190.23854 * 14 12 11 43 43 H 1.09001 * 110.61721 * 313.22449 * 14 12 11 44 44 H 1.09000 * 110.61484 * 241.49067 * 15 14 12 45 45 H 1.08999 * 110.61804 * 118.50512 * 15 14 12 46 46 H 1.09000 * 109.46920 * 301.91156 * 19 18 12 47 47 H 1.08999 * 109.47077 * 181.90573 * 19 18 12 48 48 H 0.97001 * 119.99674 * 359.97438 * 22 20 19 49 49 H 0.97004 * 119.99678 * 0.02562 * 26 25 23 50 50 H 1.08996 * 113.66868 * 90.68303 * 31 2 1 51 51 H 1.09002 * 113.66858 * 319.61418 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.3964 1.0571 0.0000 4 6 3.3036 -0.0001 0.6528 5 6 3.2462 0.0014 2.1817 6 6 4.7130 0.0000 0.1192 7 8 5.0343 0.7882 -0.7447 8 7 5.6166 -0.8754 0.6027 9 6 6.9868 -0.8750 0.0845 10 1 7.3188 0.1419 -0.1249 11 6 7.9473 -1.5674 1.0823 12 6 8.5023 -2.7782 0.2732 13 1 9.4435 -3.1935 0.6338 14 6 7.3085 -3.7742 0.1661 15 6 6.3481 -3.0819 -0.8318 16 6 7.0898 -1.7599 -1.1937 17 1 6.7881 -1.2791 -2.1243 18 7 8.5269 -2.2067 -1.1204 19 6 9.4398 -1.0587 -1.2026 20 6 10.8420 -1.5080 -0.8816 21 8 11.0594 -2.6701 -0.6106 22 7 11.8544 -0.6183 -0.8948 23 6 13.1299 -1.0270 -0.6023 24 1 13.3234 -2.0618 -0.3609 25 6 14.1737 -0.1099 -0.6164 26 7 13.9383 1.1491 -0.9106 27 14 15.9118 -0.6668 -0.2185 28 1 16.5947 -1.0884 -1.4680 29 1 15.8608 -1.8102 0.7277 30 1 16.6615 0.4553 0.4011 31 6 2.3964 -1.0571 -0.0005 32 1 -0.5400 0.9354 0.0004 33 1 -0.5400 -0.9353 0.0004 34 1 2.1797 1.9072 0.6468 35 1 2.7192 1.3548 -0.9977 36 1 3.5892 0.9655 2.5572 37 1 2.2203 -0.1713 2.5069 38 1 3.8884 -0.7891 2.5701 39 1 5.3597 -1.5056 1.2939 40 1 8.7552 -0.8936 1.3675 41 1 7.4043 -1.9083 1.9638 42 1 7.6436 -4.7340 -0.2270 43 1 6.8273 -3.9023 1.1357 44 1 5.3909 -2.8669 -0.3568 45 1 6.2071 -3.6986 -1.7195 46 1 9.1300 -0.2963 -0.4879 47 1 9.4128 -0.6445 -2.2105 48 1 11.6804 0.3111 -1.1113 49 1 13.0357 1.4382 -1.1176 50 1 2.7183 -1.3533 -0.9988 51 1 2.1797 -1.9075 0.6460 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001109697057.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:25 Heat of formation + Delta-G solvation = -17.692736 kcal Electronic energy + Delta-G solvation = -31595.400226 eV Core-core repulsion = 27495.786232 eV Total energy + Delta-G solvation = -4099.613995 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.56932 -41.35896 -39.95323 -38.72968 -36.42221 -35.42371 -33.48805 -32.85845 -32.49461 -30.87292 -29.70046 -28.56805 -27.98179 -26.89279 -25.93131 -24.62143 -23.03855 -22.10582 -21.13733 -20.57634 -20.54045 -19.93087 -18.69095 -18.07418 -17.97072 -17.53269 -17.24297 -16.96717 -16.40980 -16.14720 -16.02030 -15.52670 -15.47955 -15.34802 -15.11057 -14.81289 -14.42010 -14.12019 -13.86244 -13.58103 -13.44648 -13.38209 -13.33399 -13.14256 -12.97678 -12.86451 -12.78672 -12.73472 -12.58960 -12.37256 -12.00081 -11.94887 -11.88383 -11.82001 -11.77059 -11.48323 -11.18982 -11.14917 -10.77183 -10.42589 -10.32106 -10.12622 -10.00400 -9.42304 -8.95039 -6.08841 1.30799 1.50016 1.52630 1.54809 1.80281 1.95775 2.09812 2.37234 2.67766 3.09108 3.14550 3.32095 3.44439 3.48683 3.52928 3.57754 3.73208 3.89906 3.95345 3.99219 4.09762 4.11860 4.15503 4.29560 4.34344 4.37735 4.44543 4.47142 4.67242 4.68206 4.72926 4.77970 4.80429 4.84740 4.88242 4.93689 4.97356 5.01767 5.16574 5.19817 5.21022 5.26405 5.28381 5.42294 5.56078 5.56853 5.68994 5.85588 5.93147 6.00290 6.50529 6.54024 6.71769 7.20830 7.40961 7.88345 8.52117 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.022053 B = 0.002276 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.380556 B =12301.427979 C =12911.305518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.162 4.162 3 C -0.091 4.091 4 C -0.099 4.099 5 C -0.124 4.124 6 C 0.527 3.473 7 O -0.582 6.582 8 N -0.695 5.695 9 C 0.124 3.876 10 H 0.067 0.933 11 C -0.151 4.151 12 C 0.044 3.956 13 H 0.098 0.902 14 C -0.105 4.105 15 C -0.100 4.100 16 C 0.034 3.966 17 H 0.104 0.896 18 N -0.488 5.488 19 C 0.034 3.966 20 C 0.450 3.550 21 O -0.605 6.605 22 N -0.588 5.588 23 C -0.406 4.406 24 H 0.076 0.924 25 C -0.045 4.045 26 N -0.918 5.918 27 Si 1.137 2.863 28 H -0.271 1.271 29 H -0.275 1.275 30 H -0.273 1.273 31 C -0.080 4.080 32 H 0.112 0.888 33 H 0.122 0.878 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.058 0.942 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.416 0.584 40 H 0.054 0.946 41 H 0.111 0.889 42 H 0.063 0.937 43 H 0.099 0.901 44 H 0.096 0.904 45 H 0.069 0.931 46 H 0.070 0.930 47 H 0.096 0.904 48 H 0.382 0.618 49 H 0.258 0.742 50 H 0.087 0.913 51 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.751 -4.300 7.321 29.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.162 4.162 3 C -0.129 4.129 4 C -0.102 4.102 5 C -0.181 4.181 6 C 0.314 3.686 7 O -0.461 6.461 8 N -0.347 5.347 9 C 0.016 3.984 10 H 0.085 0.915 11 C -0.190 4.190 12 C -0.064 4.064 13 H 0.116 0.884 14 C -0.143 4.143 15 C -0.138 4.138 16 C -0.075 4.075 17 H 0.122 0.878 18 N -0.211 5.211 19 C -0.098 4.098 20 C 0.238 3.762 21 O -0.490 6.490 22 N -0.227 5.227 23 C -0.535 4.535 24 H 0.094 0.906 25 C -0.243 4.243 26 N -0.557 5.557 27 Si 0.957 3.043 28 H -0.197 1.197 29 H -0.200 1.200 30 H -0.198 1.198 31 C -0.117 4.117 32 H 0.130 0.870 33 H 0.140 0.860 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.077 0.923 37 H 0.102 0.898 38 H 0.098 0.902 39 H 0.255 0.745 40 H 0.073 0.927 41 H 0.129 0.871 42 H 0.081 0.919 43 H 0.117 0.883 44 H 0.114 0.886 45 H 0.087 0.913 46 H 0.087 0.913 47 H 0.114 0.886 48 H 0.215 0.785 49 H 0.069 0.931 50 H 0.106 0.894 51 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -26.565 -4.405 6.579 27.720 hybrid contribution -1.332 0.889 0.111 1.605 sum -27.897 -3.515 6.690 28.903 Atomic orbital electron populations 1.23134 0.93013 1.03307 1.00148 1.22714 0.94096 0.97307 1.02049 1.22228 0.93243 0.96304 1.01110 1.22009 0.88875 1.00830 0.98497 1.21607 1.04231 1.03071 0.89206 1.20896 0.87520 0.79085 0.81051 1.90697 1.80790 1.41095 1.33523 1.45873 1.09314 1.37557 1.41995 1.22415 0.82479 0.99262 0.94213 0.91462 1.23449 0.98336 0.97945 0.99275 1.24547 0.99104 0.95626 0.87114 0.88446 1.22597 0.93870 0.97427 1.00386 1.22521 0.98043 0.93630 0.99627 1.24859 0.88743 0.96673 0.97253 0.87760 1.67591 1.02842 1.23084 1.27555 1.21996 0.90458 0.94492 1.02834 1.20515 0.87121 0.86018 0.82581 1.90455 1.85046 1.19313 1.54222 1.42018 1.07485 1.10294 1.62854 1.20540 0.85498 0.98076 1.49385 0.90616 1.27891 1.08489 0.92854 0.95076 1.70946 1.23298 1.16405 1.45072 0.82583 0.68867 0.75415 0.77470 1.19690 1.19980 1.19781 1.22248 0.92075 0.96078 1.01261 0.86993 0.86009 0.90197 0.90043 0.92254 0.89792 0.90155 0.74540 0.92675 0.87081 0.91859 0.88281 0.88601 0.91252 0.91262 0.88590 0.78468 0.93141 0.89447 0.87551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 14.71 67.78 1.00 -0.53 16 2 C -0.16 -2.01 6.60 -15.99 -0.11 -2.11 16 3 C -0.09 -1.49 6.98 30.41 0.21 -1.28 16 4 C -0.10 -1.38 1.27 -52.41 -0.07 -1.45 16 5 C -0.12 -1.13 8.99 71.98 0.65 -0.48 16 6 C 0.53 10.92 6.93 87.66 0.61 11.52 16 7 O -0.58 -17.81 15.63 -3.03 -0.05 -17.86 16 8 N -0.69 -11.79 3.52 -435.02 -1.53 -13.32 16 9 C 0.12 2.94 2.26 46.59 0.11 3.04 16 10 H 0.07 1.98 6.75 -2.39 -0.02 1.97 16 11 C -0.15 -3.67 5.39 32.21 0.17 -3.50 16 12 C 0.04 1.34 4.13 46.15 0.19 1.53 16 13 H 0.10 3.80 6.26 -2.38 -0.01 3.78 16 14 C -0.10 -2.23 6.43 32.20 0.21 -2.03 16 15 C -0.10 -1.97 6.32 32.21 0.20 -1.77 16 16 C 0.03 0.89 4.83 46.12 0.22 1.11 16 17 H 0.10 2.92 8.14 -2.39 -0.02 2.90 16 18 N -0.49 -16.43 5.44 -808.87 -4.40 -20.83 16 19 C 0.03 1.28 5.24 85.56 0.45 1.73 16 20 C 0.45 22.03 7.53 87.66 0.66 22.69 16 21 O -0.61 -33.50 13.73 -3.06 -0.04 -33.54 16 22 N -0.59 -30.88 5.28 -306.98 -1.62 -32.50 16 23 C -0.41 -23.56 9.68 84.04 0.81 -22.75 16 24 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 25 C -0.05 -2.51 5.50 84.93 0.47 -2.04 16 26 N -0.92 -52.55 13.68 21.67 0.30 -52.25 16 27 Si 1.14 49.34 29.92 68.60 2.05 51.39 16 28 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 29 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 30 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 31 C -0.08 -0.88 7.18 30.42 0.22 -0.66 16 32 H 0.11 0.93 8.06 -2.91 -0.02 0.91 16 33 H 0.12 0.79 8.06 -2.91 -0.02 0.77 16 34 H 0.08 1.20 8.10 -2.39 -0.02 1.19 16 35 H 0.08 1.73 7.42 -2.38 -0.02 1.71 16 36 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.08 0.58 7.70 -2.39 -0.02 0.56 16 38 H 0.08 0.45 7.04 -2.39 -0.02 0.43 16 39 H 0.42 4.27 6.91 -92.71 -0.64 3.63 16 40 H 0.05 1.61 7.37 -2.39 -0.02 1.59 16 41 H 0.11 1.90 7.35 -2.39 -0.02 1.88 16 42 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.10 1.42 7.82 -2.39 -0.02 1.40 16 44 H 0.10 1.34 6.48 -2.39 -0.02 1.33 16 45 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.07 2.41 4.87 -2.39 -0.01 2.40 16 47 H 0.10 3.46 8.14 -2.39 -0.02 3.44 16 48 H 0.38 18.82 6.73 -92.71 -0.62 18.20 16 49 H 0.26 14.41 6.78 -92.71 -0.63 13.79 16 50 H 0.09 1.15 8.09 -2.39 -0.02 1.13 16 51 H 0.11 0.67 8.10 -2.39 -0.02 0.65 16 Total: -1.00 -76.47 396.25 0.54 -75.92 By element: Atomic # 1 Polarization: 40.12 SS G_CDS: -0.16 Total: 39.96 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: 6.00 Total: 3.04 kcal Atomic # 7 Polarization: -111.65 SS G_CDS: -7.26 Total: -118.91 kcal Atomic # 8 Polarization: -51.31 SS G_CDS: -0.09 Total: -51.40 kcal Atomic # 14 Polarization: 49.34 SS G_CDS: 2.05 Total: 51.39 kcal Total: -76.47 0.54 -75.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109697057.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.232 kcal (2) G-P(sol) polarization free energy of solvation -76.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds