Wall clock time and date at job start Wed Apr 1 2020 05:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50696 * 110.91344 * 2 1 4 4 O 1.21286 * 120.00158 * 239.29901 * 3 2 1 5 5 N 1.34774 * 120.00189 * 59.29671 * 3 2 1 6 6 C 1.46499 * 120.00193 * 179.97438 * 5 3 2 7 7 H 1.09002 * 110.54625 * 43.60370 * 6 5 3 8 8 C 1.54831 * 110.61634 * 280.73651 * 6 5 3 9 9 C 1.55852 * 103.52047 * 241.48963 * 8 6 5 10 10 H 1.08998 * 115.57931 * 158.89144 * 9 8 6 11 11 C 1.55853 * 105.71320 * 288.08649 * 9 8 6 12 12 C 1.54831 * 103.51969 * 71.91218 * 11 9 8 13 13 C 1.55847 * 103.51956 * 0.02562 * 12 11 9 14 14 H 1.09001 * 116.14952 * 159.22544 * 13 12 11 15 15 N 1.50651 * 101.03163 * 32.99146 * 13 12 11 16 16 C 1.46894 * 111.00249 * 189.76184 * 15 13 12 17 17 C 1.50704 * 109.46761 * 184.93108 * 16 15 13 18 18 O 1.21288 * 120.00307 * 0.02562 * 17 16 15 19 19 N 1.34780 * 119.99636 * 179.97438 * 17 16 15 20 20 C 1.37105 * 119.99700 * 179.97438 * 19 17 16 21 21 H 1.07997 * 119.99913 * 0.02562 * 20 19 17 22 22 C 1.38953 * 119.99834 * 180.02562 * 20 19 17 23 23 N 1.31416 * 119.99797 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99944 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47020 * 89.99982 * 24 22 20 26 26 H 1.48500 * 109.47095 * 330.00196 * 24 22 20 27 27 H 1.48501 * 109.47076 * 210.00278 * 24 22 20 28 28 C 1.54629 * 111.03595 * 123.96590 * 2 1 3 29 29 C 1.51206 * 104.67265 * 142.69007 * 28 2 1 30 30 C 1.30521 * 111.11653 * 343.56233 * 29 28 2 31 31 C 1.51097 * 111.10452 * 0.02562 * 30 29 28 32 32 H 1.09005 * 109.47473 * 60.70198 * 1 2 3 33 33 H 1.09000 * 109.47312 * 180.70071 * 1 2 3 34 34 H 1.08999 * 109.47314 * 300.70031 * 1 2 3 35 35 H 0.97002 * 120.00229 * 0.02562 * 5 3 2 36 36 H 1.09003 * 110.61158 * 122.98266 * 8 6 5 37 37 H 1.08996 * 110.74796 * 0.06637 * 8 6 5 38 38 H 1.08998 * 110.61277 * 190.42292 * 11 9 8 39 39 H 1.09007 * 110.60910 * 313.40553 * 11 9 8 40 40 H 1.09001 * 110.61837 * 241.49256 * 12 11 9 41 41 H 1.08999 * 110.74631 * 118.57395 * 12 11 9 42 42 H 1.08993 * 109.47062 * 64.93639 * 16 15 13 43 43 H 1.08998 * 109.47094 * 304.92903 * 16 15 13 44 44 H 0.97001 * 120.00309 * 0.02562 * 19 17 16 45 45 H 0.96999 * 120.00063 * 359.97438 * 23 22 20 46 46 H 1.09005 * 110.38712 * 261.51503 * 28 2 1 47 47 H 1.08998 * 110.39215 * 23.89578 * 28 2 1 48 48 H 1.08010 * 124.43923 * 163.53100 * 29 28 2 49 49 H 1.08003 * 124.45066 * 179.97438 * 30 29 28 50 50 H 1.09004 * 110.39229 * 257.62924 * 31 30 29 51 51 H 1.08998 * 110.49066 * 135.29638 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0679 1.4077 0.0000 4 8 2.7853 1.7828 -0.9031 5 7 1.7518 2.2499 1.0035 6 6 2.2752 3.6182 1.0038 7 1 2.1993 4.0571 0.0089 8 6 3.7420 3.6407 1.4991 9 6 3.6804 4.5262 2.7802 10 1 4.5024 4.3938 3.4837 11 6 3.4545 5.9834 2.2757 12 6 1.9863 5.9728 1.7844 13 6 1.5210 4.5109 2.0583 14 1 0.4443 4.3535 2.1222 15 7 2.3080 4.1859 3.3011 16 6 2.2086 2.7574 3.6287 17 6 2.9049 2.4930 4.9388 18 8 3.4316 3.4048 5.5406 19 7 2.9414 1.2432 5.4422 20 6 3.5753 1.0025 6.6339 21 1 4.0450 1.8144 7.1693 22 6 3.6134 -0.2859 7.1527 23 7 3.0422 -1.2738 6.5009 24 14 4.4764 -0.6138 8.7766 25 1 3.5078 -0.4603 9.8917 26 1 5.5888 0.3546 8.9503 27 1 5.0188 -1.9962 8.7786 28 6 2.0850 -0.8063 1.1970 29 6 3.3084 -1.5081 0.6518 30 6 3.3080 -1.5079 -0.6535 31 6 2.0854 -0.8059 -1.1970 32 1 -0.3634 0.5029 -0.8962 33 1 -0.3634 -1.0276 0.0126 34 1 -0.3634 0.5247 0.8836 35 1 1.1783 1.9499 1.7261 36 1 4.3927 4.0932 0.7508 37 1 4.0823 2.6347 1.7439 38 1 3.5813 6.6957 3.0909 39 1 4.1325 6.2144 1.4540 40 1 1.9363 6.1986 0.7192 41 1 1.3834 6.6801 2.3539 42 1 2.6810 2.1704 2.8412 43 1 1.1589 2.4759 3.7118 44 1 2.5198 0.5140 4.9612 45 1 2.5938 -1.1035 5.6578 46 1 2.3620 -0.1360 2.0107 47 1 1.3495 -1.5350 1.5378 48 1 4.0815 -1.9509 1.2624 49 1 4.0806 -1.9505 -1.2647 50 1 1.3494 -1.5341 -1.5379 51 1 2.3607 -0.1357 -2.0114 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110978813.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:36 Heat of formation + Delta-G solvation = -18.064016 kcal Electronic energy + Delta-G solvation = -32909.827420 eV Core-core repulsion = 28810.197325 eV Total energy + Delta-G solvation = -4099.630094 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.49118 -40.19307 -38.02813 -37.49425 -34.48569 -34.29653 -32.10414 -31.91141 -30.96759 -29.71876 -28.78219 -28.12253 -26.40855 -25.76670 -24.03906 -23.37117 -21.49135 -20.70068 -20.29839 -19.35127 -18.92823 -18.90307 -17.89206 -17.21968 -16.65557 -16.34551 -15.90861 -15.69231 -15.12715 -15.10163 -14.52388 -14.40156 -14.13510 -13.73868 -13.60451 -13.31217 -13.05722 -12.93947 -12.86924 -12.52294 -12.39952 -12.22083 -12.11499 -12.04809 -11.82099 -11.51319 -11.46315 -11.36845 -11.25116 -11.19454 -11.11112 -10.89609 -10.85721 -10.67710 -10.34566 -10.23093 -9.86951 -9.74411 -9.54130 -9.15504 -8.94067 -8.65065 -8.13934 -8.02665 -6.75404 -3.88432 2.23815 2.55252 2.99453 3.30159 3.34564 3.53306 3.74246 3.85776 4.22565 4.25152 4.42847 4.46652 4.55234 4.60777 4.64040 4.84899 4.92896 5.09579 5.15118 5.16383 5.19420 5.23827 5.26558 5.33045 5.37865 5.42844 5.46257 5.53941 5.58621 5.59203 5.65145 5.67112 5.72967 5.79093 5.84221 5.87943 5.94001 5.97557 6.00071 6.01792 6.12685 6.18204 6.34290 6.43384 6.50603 6.75056 6.82699 7.05964 7.35711 7.80782 8.07907 8.13083 8.60001 8.80677 9.47201 9.88642 10.67989 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008149 B = 0.004633 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3435.085600 B = 6042.008015 C = 8696.939413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.091 4.091 3 C 0.532 3.468 4 O -0.534 6.534 5 N -0.723 5.723 6 C 0.114 3.886 7 H 0.091 0.909 8 C -0.161 4.161 9 C 0.058 3.942 10 H 0.121 0.879 11 C -0.115 4.115 12 C -0.106 4.106 13 C 0.036 3.964 14 H 0.116 0.884 15 N -0.462 5.462 16 C 0.009 3.991 17 C 0.449 3.551 18 O -0.569 6.569 19 N -0.577 5.577 20 C -0.380 4.380 21 H 0.098 0.902 22 C -0.009 4.009 23 N -0.902 5.902 24 Si 1.092 2.908 25 H -0.285 1.285 26 H -0.284 1.284 27 H -0.281 1.281 28 C -0.089 4.089 29 C -0.165 4.165 30 C -0.164 4.164 31 C -0.081 4.081 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.062 0.938 35 H 0.400 0.600 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.076 0.924 42 H 0.071 0.929 43 H 0.081 0.919 44 H 0.373 0.627 45 H 0.260 0.740 46 H 0.074 0.926 47 H 0.091 0.909 48 H 0.128 0.872 49 H 0.124 0.876 50 H 0.081 0.919 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.085 3.912 -15.828 17.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.094 4.094 3 C 0.318 3.682 4 O -0.410 6.410 5 N -0.377 5.377 6 C 0.008 3.992 7 H 0.109 0.891 8 C -0.201 4.201 9 C -0.050 4.050 10 H 0.139 0.861 11 C -0.153 4.153 12 C -0.145 4.145 13 C -0.074 4.074 14 H 0.134 0.866 15 N -0.184 5.184 16 C -0.123 4.123 17 C 0.235 3.765 18 O -0.452 6.452 19 N -0.216 5.216 20 C -0.509 4.509 21 H 0.116 0.884 22 C -0.211 4.211 23 N -0.541 5.541 24 Si 0.918 3.082 25 H -0.211 1.211 26 H -0.210 1.210 27 H -0.207 1.207 28 C -0.127 4.127 29 C -0.183 4.183 30 C -0.181 4.181 31 C -0.119 4.119 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.237 0.763 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.088 0.912 43 H 0.099 0.901 44 H 0.206 0.794 45 H 0.071 0.929 46 H 0.092 0.908 47 H 0.109 0.891 48 H 0.146 0.854 49 H 0.142 0.858 50 H 0.099 0.901 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.005 3.922 -14.390 15.732 hybrid contribution -0.638 -0.072 -1.717 1.833 sum -5.643 3.850 -16.107 17.495 Atomic orbital electron populations 1.21775 0.91710 1.03215 1.02484 1.21658 0.96972 0.92230 0.98582 1.20297 0.79994 0.86663 0.81239 1.90663 1.36797 1.77335 1.36213 1.46368 1.52393 1.12860 1.26034 1.23096 0.93761 0.81721 1.00671 0.89102 1.23712 0.96173 1.01645 0.98577 1.24482 0.93045 0.94268 0.93254 0.86090 1.22603 0.95825 0.96478 1.00390 1.22458 0.96845 0.94575 1.00581 1.25110 0.98372 0.95575 0.88315 0.86585 1.67489 1.06055 1.16474 1.28383 1.22455 1.00907 0.91003 0.97976 1.19598 0.85878 0.83578 0.87462 1.90524 1.49513 1.43449 1.61683 1.41916 1.50716 1.07270 1.21688 1.20541 1.34136 0.97744 0.98483 0.88386 1.26452 0.98430 0.90849 1.05396 1.70884 1.34172 1.33018 1.16043 0.83113 0.75918 0.76060 0.73101 1.21129 1.20988 1.20689 1.21501 0.96483 0.98385 0.96292 1.23278 0.98272 1.00506 0.96253 1.23183 0.98351 1.00471 0.96141 1.21325 0.95606 0.97715 0.97209 0.91879 0.90964 0.91929 0.76279 0.90431 0.90993 0.90725 0.91405 0.91275 0.90485 0.91166 0.90115 0.79449 0.92861 0.90763 0.89080 0.85435 0.85799 0.90117 0.89537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.11 8.39 37.16 0.31 -0.80 16 2 C -0.09 -0.99 0.83 -153.95 -0.13 -1.12 16 3 C 0.53 7.02 6.44 -10.99 -0.07 6.94 16 4 O -0.53 -8.78 15.34 5.55 0.09 -8.69 16 5 N -0.72 -8.55 3.47 -50.57 -0.18 -8.72 16 6 C 0.11 1.39 2.49 -64.57 -0.16 1.23 16 7 H 0.09 1.13 7.66 -51.93 -0.40 0.73 16 8 C -0.16 -2.27 5.40 -24.24 -0.13 -2.40 16 9 C 0.06 0.88 4.37 -62.53 -0.27 0.61 16 10 H 0.12 2.21 7.54 -51.93 -0.39 1.82 16 11 C -0.11 -1.39 6.45 -24.24 -0.16 -1.54 16 12 C -0.11 -1.12 6.46 -24.25 -0.16 -1.27 16 13 C 0.04 0.42 4.69 -61.68 -0.29 0.13 16 14 H 0.12 1.18 8.14 -51.93 -0.42 0.76 16 15 N -0.46 -7.30 5.17 -205.99 -1.07 -8.36 16 16 C 0.01 0.15 3.87 -4.98 -0.02 0.13 16 17 C 0.45 10.40 7.66 -10.98 -0.08 10.32 16 18 O -0.57 -15.37 15.08 5.55 0.08 -15.29 16 19 N -0.58 -14.14 5.28 -10.96 -0.06 -14.20 16 20 C -0.38 -10.52 9.68 -14.93 -0.14 -10.66 16 21 H 0.10 2.91 7.16 -52.49 -0.38 2.53 16 22 C -0.01 -0.24 5.50 -17.46 -0.10 -0.34 16 23 N -0.90 -24.66 13.68 55.50 0.76 -23.90 16 24 Si 1.09 24.18 29.92 -169.99 -5.09 19.10 16 25 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 26 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 27 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 28 C -0.09 -1.05 5.93 -26.78 -0.16 -1.21 16 29 C -0.17 -2.08 10.78 -35.64 -0.38 -2.46 16 30 C -0.16 -1.92 10.77 -35.70 -0.38 -2.31 16 31 C -0.08 -0.89 5.74 -26.84 -0.15 -1.05 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.52 8.11 -51.93 -0.42 0.10 16 34 H 0.06 0.47 7.64 -51.93 -0.40 0.07 16 35 H 0.40 4.28 5.95 -40.82 -0.24 4.04 16 36 H 0.08 1.04 7.85 -51.93 -0.41 0.63 16 37 H 0.07 1.18 6.92 -51.93 -0.36 0.82 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.07 0.71 7.85 -51.93 -0.41 0.30 16 40 H 0.07 0.61 7.90 -51.93 -0.41 0.20 16 41 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.07 1.12 3.86 -51.93 -0.20 0.92 16 43 H 0.08 1.19 7.67 -51.93 -0.40 0.80 16 44 H 0.37 8.37 6.73 -40.82 -0.27 8.09 16 45 H 0.26 6.79 6.77 -40.82 -0.28 6.51 16 46 H 0.07 0.95 7.76 -51.93 -0.40 0.55 16 47 H 0.09 0.95 7.87 -51.93 -0.41 0.54 16 48 H 0.13 1.61 8.06 -52.48 -0.42 1.18 16 49 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 50 H 0.08 0.73 7.89 -51.93 -0.41 0.32 16 51 H 0.09 1.06 6.97 -51.93 -0.36 0.70 16 LS Contribution 393.49 15.07 5.93 5.93 Total: -1.00 -33.80 393.49 -9.88 -43.68 By element: Atomic # 1 Polarization: 24.13 SS G_CDS: -7.88 Total: 16.25 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: -2.48 Total: -5.80 kcal Atomic # 7 Polarization: -54.65 SS G_CDS: -0.54 Total: -55.19 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: 0.17 Total: -23.98 kcal Atomic # 14 Polarization: 24.18 SS G_CDS: -5.09 Total: 19.10 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.80 -9.88 -43.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110978813.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.614 kcal (2) G-P(sol) polarization free energy of solvation -33.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds