Wall clock time and date at job start Wed Apr 1 2020 05:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00260 * 2 1 4 4 C 1.38234 * 120.00240 * 179.97438 * 3 2 1 5 5 C 1.38233 * 120.00037 * 0.26327 * 4 3 2 6 6 C 1.50693 * 120.00207 * 179.72405 * 5 4 3 7 7 C 1.52997 * 109.47229 * 89.99423 * 6 5 4 8 8 C 1.52998 * 109.47490 * 180.02562 * 7 6 5 9 9 C 1.50700 * 109.47830 * 180.02562 * 8 7 6 10 10 O 1.21283 * 119.99712 * 0.02562 * 9 8 7 11 11 N 1.34771 * 120.00373 * 180.02562 * 9 8 7 12 12 C 1.46499 * 120.00133 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.47215 * 179.97438 * 12 11 9 14 14 N 1.46901 * 109.47087 * 179.97438 * 13 12 11 15 15 C 1.46900 * 110.99924 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.47144 * 180.02562 * 15 14 13 17 17 O 1.21294 * 120.00022 * 359.97438 * 16 15 14 18 18 N 1.34774 * 120.00282 * 180.02562 * 16 15 14 19 19 C 1.37097 * 120.00385 * 179.97438 * 18 16 15 20 20 H 1.07999 * 119.99875 * 359.97438 * 19 18 16 21 21 C 1.38942 * 120.00123 * 179.97438 * 19 18 16 22 22 N 1.31414 * 120.00299 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99996 * 180.02562 * 21 19 18 24 24 H 1.48490 * 109.47058 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47080 * 119.99796 * 23 21 19 26 26 H 1.48508 * 109.46915 * 239.99656 * 23 21 19 27 27 C 1.38238 * 119.99752 * 359.47832 * 5 4 3 28 28 C 1.38234 * 120.00033 * 0.49775 * 27 5 4 29 29 H 1.09000 * 109.46827 * 89.99810 * 1 2 3 30 30 H 1.08999 * 109.47240 * 210.00239 * 1 2 3 31 31 H 1.08999 * 109.46861 * 329.99859 * 1 2 3 32 32 H 1.07999 * 119.99751 * 359.97438 * 3 2 1 33 33 H 1.08002 * 119.99744 * 179.97438 * 4 3 2 34 34 H 1.09000 * 109.47097 * 209.99342 * 6 5 4 35 35 H 1.09001 * 109.47081 * 329.99847 * 6 5 4 36 36 H 1.09004 * 109.47454 * 300.00132 * 7 6 5 37 37 H 1.09006 * 109.47180 * 60.00059 * 7 6 5 38 38 H 1.08999 * 109.47245 * 300.00709 * 8 7 6 39 39 H 1.09006 * 109.46881 * 59.99852 * 8 7 6 40 40 H 0.96998 * 120.00128 * 359.97438 * 11 9 8 41 41 H 1.08994 * 109.46983 * 300.00198 * 12 11 9 42 42 H 1.09006 * 109.47113 * 59.99754 * 12 11 9 43 43 H 1.09000 * 109.47133 * 299.99891 * 13 12 11 44 44 H 1.08993 * 109.47036 * 60.00224 * 13 12 11 45 45 H 1.00904 * 110.99749 * 56.05089 * 14 13 12 46 46 H 1.08998 * 109.47254 * 300.00026 * 15 14 13 47 47 H 1.09001 * 109.46926 * 60.00690 * 15 14 13 48 48 H 0.97006 * 119.99573 * 359.97438 * 18 16 15 49 49 H 0.96996 * 120.00573 * 180.02562 * 22 21 19 50 50 H 1.07999 * 119.99934 * 180.25938 * 27 5 4 51 51 H 1.08001 * 120.00294 * 179.76453 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 0.0000 -0.0044 6 6 5.7787 0.0000 -0.0101 7 6 6.2941 -0.0027 1.4304 8 6 7.8241 -0.0021 1.4247 9 6 8.3319 -0.0054 2.8435 10 8 7.5473 -0.0085 3.7684 11 7 9.6579 -0.0050 3.0848 12 6 10.1515 -0.0076 4.4641 13 6 11.6814 -0.0071 4.4583 14 7 12.1764 -0.0091 5.8414 15 6 13.6450 -0.0093 5.8750 16 6 14.1147 -0.0121 7.3069 17 8 13.3056 -0.0132 8.2106 18 7 15.4338 -0.0122 7.5835 19 6 15.8611 -0.0141 8.8862 20 1 15.1407 -0.0151 9.6908 21 6 17.2210 -0.0148 9.1712 22 7 18.0976 -0.0141 8.1922 23 14 17.8032 -0.0182 10.9462 24 1 16.6272 -0.0191 11.8529 25 1 18.6225 -1.2312 11.1961 26 1 18.6229 1.1938 11.2006 27 6 3.5805 -1.1972 0.0010 28 6 2.1982 -1.1972 0.0009 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 1.6582 2.1324 -0.0004 33 1 4.1205 2.1325 0.0001 34 1 6.1400 -0.8891 -0.5270 35 1 6.1401 0.8909 -0.5236 36 1 5.9328 0.8863 1.9473 37 1 5.9327 -0.8937 1.9440 38 1 8.1859 -0.8908 0.9076 39 1 8.1851 0.8891 0.9112 40 1 10.2854 -0.0029 2.3451 41 1 9.7894 0.8809 4.9812 42 1 9.7907 -0.8990 4.9774 43 1 12.0431 -0.8959 3.9413 44 1 12.0425 0.8840 3.9449 45 1 11.8031 -0.7915 6.3578 46 1 14.0199 -0.8986 5.3683 47 1 14.0200 0.8814 5.3710 48 1 16.0808 -0.0109 6.8608 49 1 19.0469 -0.0149 8.3912 50 1 4.1205 -2.1325 0.0013 51 1 1.6582 -2.1325 0.0013 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133255725.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:52 Heat of formation + Delta-G solvation = -74.355555 kcal Electronic energy + Delta-G solvation = -27444.807570 eV Core-core repulsion = 23342.736491 eV Total energy + Delta-G solvation = -4102.071079 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.07789 -39.69582 -38.33482 -36.43111 -35.57861 -34.35917 -33.74975 -32.78442 -31.27764 -31.25030 -29.93385 -28.69610 -26.33276 -25.40948 -23.89948 -23.08632 -22.58752 -22.00111 -20.89348 -20.45397 -19.29088 -17.92691 -17.39236 -16.49042 -16.40161 -16.15937 -16.04025 -15.85786 -15.51179 -15.42695 -14.68817 -14.45941 -14.31026 -14.24284 -13.86752 -13.82153 -13.70504 -13.62418 -13.39010 -13.20785 -12.81840 -12.79100 -12.45791 -12.16236 -12.14549 -11.91107 -11.75105 -11.53127 -11.47199 -11.42818 -11.37867 -11.26518 -11.05740 -11.01130 -10.34697 -10.23741 -10.04730 -9.53357 -9.27515 -9.24560 -8.82769 -8.51677 -8.14282 -7.97737 -6.43158 -3.83959 0.96244 1.05334 2.46493 2.89044 3.15895 3.26735 3.34338 3.37999 3.88638 4.11076 4.28303 4.35018 4.38845 4.48668 4.53443 4.62121 4.65899 4.81596 4.84640 4.86343 4.97388 5.10336 5.10838 5.16192 5.16753 5.18162 5.24554 5.25800 5.33053 5.34564 5.37619 5.43138 5.66166 5.71106 5.76573 5.78800 5.83207 5.90064 5.93683 5.97620 6.06418 6.19499 6.23629 6.25992 6.28392 6.66385 7.08540 7.28385 7.54488 7.55552 8.03991 8.05077 8.59577 9.16726 9.52459 10.03791 10.74677 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.041363 B = 0.001056 C = 0.001043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.763051 B =26511.045920 C =26849.483155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.093 4.093 3 C -0.120 4.120 4 C -0.113 4.113 5 C -0.085 4.085 6 C -0.081 4.081 7 C -0.099 4.099 8 C -0.140 4.140 9 C 0.509 3.491 10 O -0.537 6.537 11 N -0.731 5.731 12 C 0.119 3.881 13 C 0.050 3.950 14 N -0.666 5.666 15 C 0.052 3.948 16 C 0.440 3.560 17 O -0.582 6.582 18 N -0.563 5.563 19 C -0.299 4.299 20 H 0.104 0.896 21 C 0.023 3.977 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.267 1.267 25 H -0.282 1.282 26 H -0.281 1.281 27 C -0.113 4.113 28 C -0.120 4.120 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.120 0.880 33 H 0.121 0.879 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.400 0.600 41 H 0.079 0.921 42 H 0.067 0.933 43 H 0.032 0.968 44 H 0.077 0.923 45 H 0.352 0.648 46 H 0.045 0.955 47 H 0.087 0.913 48 H 0.392 0.608 49 H 0.271 0.729 50 H 0.121 0.879 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.376 -0.854 -25.360 36.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.093 4.093 3 C -0.138 4.138 4 C -0.131 4.131 5 C -0.085 4.085 6 C -0.118 4.118 7 C -0.136 4.136 8 C -0.180 4.180 9 C 0.296 3.704 10 O -0.414 6.414 11 N -0.384 5.384 12 C -0.005 4.005 13 C -0.080 4.080 14 N -0.299 5.299 15 C -0.080 4.080 16 C 0.225 3.775 17 O -0.466 6.466 18 N -0.200 5.200 19 C -0.429 4.429 20 H 0.122 0.878 21 C -0.179 4.179 22 N -0.544 5.544 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.207 1.207 27 C -0.131 4.131 28 C -0.138 4.138 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.138 0.862 33 H 0.139 0.861 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.233 0.767 41 H 0.098 0.902 42 H 0.086 0.914 43 H 0.050 0.950 44 H 0.095 0.905 45 H 0.172 0.828 46 H 0.063 0.937 47 H 0.105 0.895 48 H 0.225 0.775 49 H 0.081 0.919 50 H 0.139 0.861 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -27.327 -0.177 -23.959 36.343 hybrid contribution 1.490 -0.893 -0.256 1.756 sum -25.837 -1.070 -24.215 35.427 Atomic orbital electron populations 1.20794 0.91305 1.02818 1.02234 1.19930 0.96068 0.93276 1.00032 1.21035 0.94237 0.97532 1.00950 1.21052 0.94146 0.97669 1.00206 1.19850 0.95610 0.93186 0.99843 1.20636 0.90957 1.02985 0.97252 1.21323 0.92544 1.04152 0.95630 1.21699 0.97897 1.04477 0.93956 1.20713 0.82026 0.75923 0.91768 1.90740 1.55477 1.48868 1.46296 1.45966 1.07219 1.76020 1.09150 1.21279 0.93500 1.03386 0.82321 1.22078 0.93611 1.00964 0.91389 1.59947 1.07422 1.51549 1.10962 1.21672 0.87958 1.01322 0.97083 1.19780 0.83415 0.84616 0.89687 1.90537 1.53515 1.55296 1.47231 1.41860 1.04956 1.64350 1.08828 1.19767 0.91614 1.47455 0.84029 0.87831 1.25257 0.95597 0.97278 0.99756 1.69616 1.02234 1.50712 1.31805 0.85801 0.78804 0.77710 0.82056 1.19169 1.20757 1.20719 1.21049 0.94144 0.97660 1.00236 1.21035 0.94234 0.97528 1.00968 0.91266 0.91563 0.91558 0.86168 0.86051 0.90873 0.90852 0.90924 0.90956 0.88836 0.88772 0.76665 0.90235 0.91426 0.94959 0.90493 0.82809 0.93723 0.89459 0.77463 0.91915 0.86074 0.86178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.57 10.01 36.01 0.36 -0.21 16 2 C -0.09 -0.67 5.88 -104.62 -0.62 -1.28 16 3 C -0.12 -0.87 9.70 -39.58 -0.38 -1.25 16 4 C -0.11 -0.83 9.70 -39.58 -0.38 -1.22 16 5 C -0.08 -0.62 5.13 -104.63 -0.54 -1.16 16 6 C -0.08 -0.46 5.34 -27.89 -0.15 -0.60 16 7 C -0.10 -0.72 4.49 -26.73 -0.12 -0.84 16 8 C -0.14 -0.85 5.70 -27.88 -0.16 -1.01 16 9 C 0.51 5.22 7.83 -10.99 -0.09 5.13 16 10 O -0.54 -8.06 15.98 5.55 0.09 -7.97 16 11 N -0.73 -6.41 5.56 -60.30 -0.33 -6.74 16 12 C 0.12 1.35 5.93 -4.04 -0.02 1.33 16 13 C 0.05 0.56 5.80 -3.82 -0.02 0.53 16 14 N -0.67 -10.50 6.13 -115.06 -0.70 -11.21 16 15 C 0.05 0.90 6.17 -4.97 -0.03 0.87 16 16 C 0.44 10.34 7.82 -10.99 -0.09 10.26 16 17 O -0.58 -15.90 15.78 5.55 0.09 -15.81 16 18 N -0.56 -14.20 5.29 -10.97 -0.06 -14.26 16 19 C -0.30 -8.35 9.68 -14.94 -0.14 -8.49 16 20 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -24.43 13.05 55.50 0.72 -23.71 16 23 Si 0.93 21.02 29.55 -169.99 -5.02 16.00 16 24 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 27 C -0.11 -0.83 9.70 -39.58 -0.38 -1.22 16 28 C -0.12 -0.86 9.70 -39.58 -0.38 -1.25 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.29 8.09 -51.93 -0.42 -0.13 16 31 H 0.07 0.29 8.09 -51.93 -0.42 -0.13 16 32 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 33 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 34 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 35 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 36 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 37 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 38 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.40 2.22 8.47 -40.82 -0.35 1.87 16 41 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.35 5.79 8.43 -39.29 -0.33 5.46 16 46 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 48 H 0.39 9.39 7.90 -40.82 -0.32 9.07 16 49 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 50 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 51 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 LS Contribution 431.07 15.07 6.50 6.50 Total: -1.00 -34.95 431.07 -10.50 -45.45 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: -8.53 Total: 11.66 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: -3.25 Total: 0.10 kcal Atomic # 7 Polarization: -55.54 SS G_CDS: -0.37 Total: -55.91 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: 0.18 Total: -23.78 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 6.50 Total: 6.50 kcal Total: -34.95 -10.50 -45.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133255725.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.907 kcal (2) G-P(sol) polarization free energy of solvation -34.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds