Wall clock time and date at job start Wed Apr 1 2020 05:06:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 C 1.38234 * 120.00260 * 2 1
4 4 C 1.38234 * 120.00240 * 179.97438 * 3 2 1
5 5 C 1.38233 * 120.00037 * 0.26327 * 4 3 2
6 6 C 1.50693 * 120.00207 * 179.72405 * 5 4 3
7 7 C 1.52997 * 109.47229 * 89.99423 * 6 5 4
8 8 C 1.52998 * 109.47490 * 180.02562 * 7 6 5
9 9 C 1.50700 * 109.47830 * 180.02562 * 8 7 6
10 10 O 1.21283 * 119.99712 * 0.02562 * 9 8 7
11 11 N 1.34771 * 120.00373 * 180.02562 * 9 8 7
12 12 C 1.46499 * 120.00133 * 179.97438 * 11 9 8
13 13 C 1.52998 * 109.47215 * 179.97438 * 12 11 9
14 14 N 1.46901 * 109.47087 * 179.97438 * 13 12 11
15 15 C 1.46900 * 110.99924 * 179.97438 * 14 13 12
16 16 C 1.50703 * 109.47144 * 180.02562 * 15 14 13
17 17 O 1.21294 * 120.00022 * 359.97438 * 16 15 14
18 18 N 1.34774 * 120.00282 * 180.02562 * 16 15 14
19 19 C 1.37097 * 120.00385 * 179.97438 * 18 16 15
20 20 H 1.07999 * 119.99875 * 359.97438 * 19 18 16
21 21 C 1.38942 * 120.00123 * 179.97438 * 19 18 16
22 22 N 1.31414 * 120.00299 * 359.97438 * 21 19 18
23 23 Si 1.86805 * 119.99996 * 180.02562 * 21 19 18
24 24 H 1.48490 * 109.47058 * 359.97438 * 23 21 19
25 25 H 1.48498 * 109.47080 * 119.99796 * 23 21 19
26 26 H 1.48508 * 109.46915 * 239.99656 * 23 21 19
27 27 C 1.38238 * 119.99752 * 359.47832 * 5 4 3
28 28 C 1.38234 * 120.00033 * 0.49775 * 27 5 4
29 29 H 1.09000 * 109.46827 * 89.99810 * 1 2 3
30 30 H 1.08999 * 109.47240 * 210.00239 * 1 2 3
31 31 H 1.08999 * 109.46861 * 329.99859 * 1 2 3
32 32 H 1.07999 * 119.99751 * 359.97438 * 3 2 1
33 33 H 1.08002 * 119.99744 * 179.97438 * 4 3 2
34 34 H 1.09000 * 109.47097 * 209.99342 * 6 5 4
35 35 H 1.09001 * 109.47081 * 329.99847 * 6 5 4
36 36 H 1.09004 * 109.47454 * 300.00132 * 7 6 5
37 37 H 1.09006 * 109.47180 * 60.00059 * 7 6 5
38 38 H 1.08999 * 109.47245 * 300.00709 * 8 7 6
39 39 H 1.09006 * 109.46881 * 59.99852 * 8 7 6
40 40 H 0.96998 * 120.00128 * 359.97438 * 11 9 8
41 41 H 1.08994 * 109.46983 * 300.00198 * 12 11 9
42 42 H 1.09006 * 109.47113 * 59.99754 * 12 11 9
43 43 H 1.09000 * 109.47133 * 299.99891 * 13 12 11
44 44 H 1.08993 * 109.47036 * 60.00224 * 13 12 11
45 45 H 1.00904 * 110.99749 * 56.05089 * 14 13 12
46 46 H 1.08998 * 109.47254 * 300.00026 * 15 14 13
47 47 H 1.09001 * 109.46926 * 60.00690 * 15 14 13
48 48 H 0.97006 * 119.99573 * 359.97438 * 18 16 15
49 49 H 0.96996 * 120.00573 * 180.02562 * 22 21 19
50 50 H 1.07999 * 119.99934 * 180.25938 * 27 5 4
51 51 H 1.08001 * 120.00294 * 179.76453 * 28 27 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1982 1.1971 0.0000
4 6 3.5806 1.1971 0.0005
5 6 4.2717 0.0000 -0.0044
6 6 5.7787 0.0000 -0.0101
7 6 6.2941 -0.0027 1.4304
8 6 7.8241 -0.0021 1.4247
9 6 8.3319 -0.0054 2.8435
10 8 7.5473 -0.0085 3.7684
11 7 9.6579 -0.0050 3.0848
12 6 10.1515 -0.0076 4.4641
13 6 11.6814 -0.0071 4.4583
14 7 12.1764 -0.0091 5.8414
15 6 13.6450 -0.0093 5.8750
16 6 14.1147 -0.0121 7.3069
17 8 13.3056 -0.0132 8.2106
18 7 15.4338 -0.0122 7.5835
19 6 15.8611 -0.0141 8.8862
20 1 15.1407 -0.0151 9.6908
21 6 17.2210 -0.0148 9.1712
22 7 18.0976 -0.0141 8.1922
23 14 17.8032 -0.0182 10.9462
24 1 16.6272 -0.0191 11.8529
25 1 18.6225 -1.2312 11.1961
26 1 18.6229 1.1938 11.2006
27 6 3.5805 -1.1972 0.0010
28 6 2.1982 -1.1972 0.0009
29 1 -0.3633 0.0000 -1.0277
30 1 -0.3633 -0.8899 0.5139
31 1 -0.3633 0.8900 0.5139
32 1 1.6582 2.1324 -0.0004
33 1 4.1205 2.1325 0.0001
34 1 6.1400 -0.8891 -0.5270
35 1 6.1401 0.8909 -0.5236
36 1 5.9328 0.8863 1.9473
37 1 5.9327 -0.8937 1.9440
38 1 8.1859 -0.8908 0.9076
39 1 8.1851 0.8891 0.9112
40 1 10.2854 -0.0029 2.3451
41 1 9.7894 0.8809 4.9812
42 1 9.7907 -0.8990 4.9774
43 1 12.0431 -0.8959 3.9413
44 1 12.0425 0.8840 3.9449
45 1 11.8031 -0.7915 6.3578
46 1 14.0199 -0.8986 5.3683
47 1 14.0200 0.8814 5.3710
48 1 16.0808 -0.0109 6.8608
49 1 19.0469 -0.0149 8.3912
50 1 4.1205 -2.1325 0.0013
51 1 1.6582 -2.1325 0.0013
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001133255725.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:06:51
Heat of formation + Delta-G solvation = -98.986743 kcal
Electronic energy + Delta-G solvation = -27445.875658 eV
Core-core repulsion = 23342.736491 eV
Total energy + Delta-G solvation = -4103.139167 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.94 seconds
Orbital eigenvalues (eV)
-40.83172 -40.28566 -40.14041 -37.53494 -36.18883 -35.96750 -35.17790 -33.33741
-33.25247 -31.78221 -30.87278 -29.42585 -27.69301 -26.31303 -25.35253 -23.59614
-23.35339 -22.81703 -21.40460 -21.20652 -21.10019 -19.92287 -18.26282 -17.63476
-17.30001 -17.13239 -16.91900 -16.74302 -16.49307 -16.27618 -15.96391 -15.82635
-15.58165 -15.11887 -14.97088 -14.70963 -14.63068 -14.33566 -14.25256 -14.02425
-13.97171 -13.53024 -13.39234 -13.30598 -13.17611 -12.93942 -12.67130 -12.64673
-12.55155 -12.41293 -12.37048 -12.26639 -12.11795 -11.88055 -11.75724 -11.51970
-11.51602 -10.92329 -10.37033 -10.11238 -10.01737 -9.80505 -9.38531 -9.33445
-8.47394 -5.95965 0.44438 0.52223 1.36459 1.42209 1.56158 1.68152
2.04525 2.08868 2.31005 2.84899 3.04530 3.20217 3.55176 3.78998
3.82905 3.92191 3.94989 4.07942 4.11017 4.15185 4.18415 4.31742
4.33815 4.43742 4.46521 4.50375 4.59899 4.62621 4.67148 4.71151
4.78066 4.81292 4.87634 4.89046 4.91503 4.97372 5.03607 5.14540
5.27978 5.31813 5.38520 5.41123 5.46902 5.55066 5.73090 5.77232
5.84842 6.07233 6.17392 6.31443 6.58917 6.60245 7.12621 7.31030
7.55834 8.11650 8.70198
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.041363 B = 0.001056 C = 0.001043
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 676.763051 B =26511.045920 C =26849.483155
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.114 4.114
2 C -0.106 4.106
3 C -0.134 4.134
4 C -0.127 4.127
5 C -0.099 4.099
6 C -0.072 4.072
7 C -0.094 4.094
8 C -0.129 4.129
9 C 0.503 3.497
10 O -0.594 6.594
11 N -0.715 5.715
12 C 0.126 3.874
13 C 0.060 3.940
14 N -0.688 5.688
15 C 0.068 3.932
16 C 0.434 3.566
17 O -0.626 6.626
18 N -0.571 5.571
19 C -0.335 4.335
20 H 0.077 0.923
21 C -0.010 4.010
22 N -0.919 5.919
23 Si 0.991 3.009
24 H -0.275 1.275
25 H -0.270 1.270
26 H -0.270 1.270
27 C -0.127 4.127
28 C -0.134 4.134
29 H 0.077 0.923
30 H 0.070 0.930
31 H 0.070 0.930
32 H 0.132 0.868
33 H 0.132 0.868
34 H 0.089 0.911
35 H 0.089 0.911
36 H 0.048 0.952
37 H 0.049 0.951
38 H 0.124 0.876
39 H 0.124 0.876
40 H 0.420 0.580
41 H 0.053 0.947
42 H 0.051 0.949
43 H 0.058 0.942
44 H 0.094 0.906
45 H 0.345 0.655
46 H 0.073 0.927
47 H 0.110 0.890
48 H 0.398 0.602
49 H 0.278 0.722
50 H 0.132 0.868
51 H 0.133 0.867
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -25.455 -0.951 -27.713 37.641
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C -0.106 4.106
3 C -0.152 4.152
4 C -0.145 4.145
5 C -0.099 4.099
6 C -0.109 4.109
7 C -0.132 4.132
8 C -0.168 4.168
9 C 0.291 3.709
10 O -0.475 6.475
11 N -0.369 5.369
12 C 0.001 3.999
13 C -0.070 4.070
14 N -0.320 5.320
15 C -0.064 4.064
16 C 0.222 3.778
17 O -0.513 6.513
18 N -0.209 5.209
19 C -0.465 4.465
20 H 0.095 0.905
21 C -0.210 4.210
22 N -0.560 5.560
23 Si 0.815 3.185
24 H -0.200 1.200
25 H -0.195 1.195
26 H -0.196 1.196
27 C -0.145 4.145
28 C -0.152 4.152
29 H 0.096 0.904
30 H 0.089 0.911
31 H 0.089 0.911
32 H 0.150 0.850
33 H 0.150 0.850
34 H 0.108 0.892
35 H 0.107 0.893
36 H 0.067 0.933
37 H 0.068 0.932
38 H 0.142 0.858
39 H 0.142 0.858
40 H 0.257 0.743
41 H 0.072 0.928
42 H 0.070 0.930
43 H 0.076 0.924
44 H 0.112 0.888
45 H 0.163 0.837
46 H 0.091 0.909
47 H 0.128 0.872
48 H 0.232 0.768
49 H 0.088 0.912
50 H 0.150 0.850
51 H 0.150 0.850
Dipole moment (debyes) X Y Z Total
from point charges -26.365 -0.271 -26.390 37.304
hybrid contribution 1.139 -0.859 0.456 1.497
sum -25.226 -1.130 -25.934 36.196
Atomic orbital electron populations
1.20822 0.89934 1.03322 1.02927 1.20252 0.97306 0.93291 0.99766
1.21310 0.94569 0.98258 1.01081 1.21317 0.94518 0.98328 1.00316
1.20129 0.96755 0.93170 0.99801 1.20602 0.89742 1.04523 0.96059
1.21225 0.93688 1.01942 0.96367 1.21727 0.96590 1.07267 0.91224
1.21548 0.81836 0.74482 0.93006 1.90724 1.56896 1.51491 1.48357
1.45801 1.07357 1.75063 1.08674 1.21011 0.93850 1.01450 0.83565
1.22072 0.92871 1.02915 0.89101 1.59918 1.06617 1.51675 1.13838
1.21528 0.88863 1.03643 0.92348 1.20958 0.82401 0.82239 0.92208
1.90506 1.54481 1.56700 1.49595 1.41914 1.05882 1.64973 1.08117
1.19694 0.91955 1.49967 0.84856 0.90527 1.25993 0.95122 0.96196
1.03670 1.69664 1.02687 1.50320 1.33337 0.84903 0.78035 0.78393
0.77209 1.19958 1.19485 1.19556 1.21315 0.94512 0.98319 1.00318
1.21312 0.94569 0.98252 1.01081 0.90404 0.91058 0.91068 0.84964
0.85003 0.89250 0.89275 0.93274 0.93227 0.85798 0.85825 0.74293
0.92824 0.93009 0.92393 0.88765 0.83658 0.90872 0.87232 0.76821
0.91248 0.84985 0.84951
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.05 10.01 71.24 0.71 -0.34 16
2 C -0.11 -1.50 5.88 -19.86 -0.12 -1.62 16
3 C -0.13 -1.93 9.70 22.27 0.22 -1.72 16
4 C -0.13 -1.84 9.70 22.27 0.22 -1.63 16
5 C -0.10 -1.40 5.13 -19.87 -0.10 -1.50 16
6 C -0.07 -0.68 5.34 29.84 0.16 -0.52 16
7 C -0.09 -1.31 4.49 30.59 0.14 -1.17 16
8 C -0.13 -1.23 5.70 29.85 0.17 -1.06 16
9 C 0.50 9.78 7.83 87.66 0.69 10.47 16
10 O -0.59 -18.40 15.98 -3.04 -0.05 -18.44 16
11 N -0.72 -11.12 5.56 -463.07 -2.57 -13.69 16
12 C 0.13 2.77 5.93 86.38 0.51 3.28 16
13 C 0.06 1.18 5.80 86.30 0.50 1.68 16
14 N -0.69 -20.86 6.13 -517.94 -3.17 -24.03 16
15 C 0.07 2.21 6.17 85.56 0.53 2.74 16
16 C 0.43 20.51 7.82 87.66 0.69 21.19 16
17 O -0.63 -35.13 15.78 -3.07 -0.05 -35.18 16
18 N -0.57 -29.04 5.29 -306.99 -1.62 -30.66 16
19 C -0.34 -19.07 9.68 84.04 0.81 -18.25 16
20 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16
21 C -0.01 -0.53 5.50 84.92 0.47 -0.06 16
22 N -0.92 -49.07 13.05 21.66 0.28 -48.78 16
23 Si 0.99 42.88 29.55 68.60 2.03 44.90 16
24 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16
25 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16
26 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16
27 C -0.13 -1.83 9.70 22.27 0.22 -1.61 16
28 C -0.13 -1.92 9.70 22.27 0.22 -1.71 16
29 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16
30 H 0.07 0.57 8.09 -2.39 -0.02 0.55 16
31 H 0.07 0.57 8.09 -2.39 -0.02 0.55 16
32 H 0.13 1.43 8.06 -2.91 -0.02 1.41 16
33 H 0.13 1.49 8.06 -2.91 -0.02 1.47 16
34 H 0.09 0.57 8.09 -2.39 -0.02 0.55 16
35 H 0.09 0.58 8.09 -2.39 -0.02 0.56 16
36 H 0.05 0.90 8.10 -2.38 -0.02 0.89 16
37 H 0.05 0.91 8.10 -2.38 -0.02 0.89 16
38 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16
39 H 0.12 0.53 8.14 -2.38 -0.02 0.51 16
40 H 0.42 3.15 8.47 -92.71 -0.79 2.36 16
41 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16
42 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16
43 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16
44 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16
45 H 0.34 11.29 8.43 -89.69 -0.76 10.53 16
46 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16
47 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16
48 H 0.40 18.93 7.90 -92.70 -0.73 18.20 16
49 H 0.28 13.84 8.31 -92.71 -0.77 13.06 16
50 H 0.13 1.47 8.06 -2.91 -0.02 1.45 16
51 H 0.13 1.42 8.06 -2.91 -0.02 1.39 16
Total: -1.00 -79.23 431.07 -0.47 -79.70
By element:
Atomic # 1 Polarization: 39.34 SS G_CDS: -1.33 Total: 38.02 kcal
Atomic # 6 Polarization: 2.16 SS G_CDS: 6.02 Total: 8.18 kcal
Atomic # 7 Polarization: -110.08 SS G_CDS: -7.09 Total: -117.17 kcal
Atomic # 8 Polarization: -53.53 SS G_CDS: -0.10 Total: -53.62 kcal
Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.90 kcal
Total: -79.23 -0.47 -79.70 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001133255725.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -19.291 kcal
(2) G-P(sol) polarization free energy of solvation -79.229 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.521 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.466 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.696 kcal
(6) G-S(sol) free energy of system = (1) + (5) -98.987 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.95 seconds