Wall clock time and date at job start Wed Apr 1 2020 05:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00260 * 2 1 4 4 C 1.38234 * 120.00240 * 179.97438 * 3 2 1 5 5 C 1.38233 * 120.00037 * 0.26327 * 4 3 2 6 6 C 1.50693 * 120.00207 * 179.72405 * 5 4 3 7 7 C 1.52997 * 109.47229 * 89.99423 * 6 5 4 8 8 C 1.52998 * 109.47490 * 180.02562 * 7 6 5 9 9 C 1.50700 * 109.47830 * 180.02562 * 8 7 6 10 10 O 1.21283 * 119.99712 * 0.02562 * 9 8 7 11 11 N 1.34771 * 120.00373 * 180.02562 * 9 8 7 12 12 C 1.46499 * 120.00133 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.47215 * 179.97438 * 12 11 9 14 14 N 1.46901 * 109.47087 * 179.97438 * 13 12 11 15 15 C 1.46900 * 110.99924 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.47144 * 180.02562 * 15 14 13 17 17 O 1.21294 * 120.00022 * 359.97438 * 16 15 14 18 18 N 1.34774 * 120.00282 * 180.02562 * 16 15 14 19 19 C 1.37097 * 120.00385 * 179.97438 * 18 16 15 20 20 H 1.07999 * 119.99875 * 359.97438 * 19 18 16 21 21 C 1.38942 * 120.00123 * 179.97438 * 19 18 16 22 22 N 1.31414 * 120.00299 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99996 * 180.02562 * 21 19 18 24 24 H 1.48490 * 109.47058 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47080 * 119.99796 * 23 21 19 26 26 H 1.48508 * 109.46915 * 239.99656 * 23 21 19 27 27 C 1.38238 * 119.99752 * 359.47832 * 5 4 3 28 28 C 1.38234 * 120.00033 * 0.49775 * 27 5 4 29 29 H 1.09000 * 109.46827 * 89.99810 * 1 2 3 30 30 H 1.08999 * 109.47240 * 210.00239 * 1 2 3 31 31 H 1.08999 * 109.46861 * 329.99859 * 1 2 3 32 32 H 1.07999 * 119.99751 * 359.97438 * 3 2 1 33 33 H 1.08002 * 119.99744 * 179.97438 * 4 3 2 34 34 H 1.09000 * 109.47097 * 209.99342 * 6 5 4 35 35 H 1.09001 * 109.47081 * 329.99847 * 6 5 4 36 36 H 1.09004 * 109.47454 * 300.00132 * 7 6 5 37 37 H 1.09006 * 109.47180 * 60.00059 * 7 6 5 38 38 H 1.08999 * 109.47245 * 300.00709 * 8 7 6 39 39 H 1.09006 * 109.46881 * 59.99852 * 8 7 6 40 40 H 0.96998 * 120.00128 * 359.97438 * 11 9 8 41 41 H 1.08994 * 109.46983 * 300.00198 * 12 11 9 42 42 H 1.09006 * 109.47113 * 59.99754 * 12 11 9 43 43 H 1.09000 * 109.47133 * 299.99891 * 13 12 11 44 44 H 1.08993 * 109.47036 * 60.00224 * 13 12 11 45 45 H 1.00904 * 110.99749 * 56.05089 * 14 13 12 46 46 H 1.08998 * 109.47254 * 300.00026 * 15 14 13 47 47 H 1.09001 * 109.46926 * 60.00690 * 15 14 13 48 48 H 0.97006 * 119.99573 * 359.97438 * 18 16 15 49 49 H 0.96996 * 120.00573 * 180.02562 * 22 21 19 50 50 H 1.07999 * 119.99934 * 180.25938 * 27 5 4 51 51 H 1.08001 * 120.00294 * 179.76453 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 0.0000 -0.0044 6 6 5.7787 0.0000 -0.0101 7 6 6.2941 -0.0027 1.4304 8 6 7.8241 -0.0021 1.4247 9 6 8.3319 -0.0054 2.8435 10 8 7.5473 -0.0085 3.7684 11 7 9.6579 -0.0050 3.0848 12 6 10.1515 -0.0076 4.4641 13 6 11.6814 -0.0071 4.4583 14 7 12.1764 -0.0091 5.8414 15 6 13.6450 -0.0093 5.8750 16 6 14.1147 -0.0121 7.3069 17 8 13.3056 -0.0132 8.2106 18 7 15.4338 -0.0122 7.5835 19 6 15.8611 -0.0141 8.8862 20 1 15.1407 -0.0151 9.6908 21 6 17.2210 -0.0148 9.1712 22 7 18.0976 -0.0141 8.1922 23 14 17.8032 -0.0182 10.9462 24 1 16.6272 -0.0191 11.8529 25 1 18.6225 -1.2312 11.1961 26 1 18.6229 1.1938 11.2006 27 6 3.5805 -1.1972 0.0010 28 6 2.1982 -1.1972 0.0009 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 1.6582 2.1324 -0.0004 33 1 4.1205 2.1325 0.0001 34 1 6.1400 -0.8891 -0.5270 35 1 6.1401 0.8909 -0.5236 36 1 5.9328 0.8863 1.9473 37 1 5.9327 -0.8937 1.9440 38 1 8.1859 -0.8908 0.9076 39 1 8.1851 0.8891 0.9112 40 1 10.2854 -0.0029 2.3451 41 1 9.7894 0.8809 4.9812 42 1 9.7907 -0.8990 4.9774 43 1 12.0431 -0.8959 3.9413 44 1 12.0425 0.8840 3.9449 45 1 11.8031 -0.7915 6.3578 46 1 14.0199 -0.8986 5.3683 47 1 14.0200 0.8814 5.3710 48 1 16.0808 -0.0109 6.8608 49 1 19.0469 -0.0149 8.3912 50 1 4.1205 -2.1325 0.0013 51 1 1.6582 -2.1325 0.0013 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133255725.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:51 Heat of formation + Delta-G solvation = -98.986743 kcal Electronic energy + Delta-G solvation = -27445.875658 eV Core-core repulsion = 23342.736491 eV Total energy + Delta-G solvation = -4103.139167 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.83172 -40.28566 -40.14041 -37.53494 -36.18883 -35.96750 -35.17790 -33.33741 -33.25247 -31.78221 -30.87278 -29.42585 -27.69301 -26.31303 -25.35253 -23.59614 -23.35339 -22.81703 -21.40460 -21.20652 -21.10019 -19.92287 -18.26282 -17.63476 -17.30001 -17.13239 -16.91900 -16.74302 -16.49307 -16.27618 -15.96391 -15.82635 -15.58165 -15.11887 -14.97088 -14.70963 -14.63068 -14.33566 -14.25256 -14.02425 -13.97171 -13.53024 -13.39234 -13.30598 -13.17611 -12.93942 -12.67130 -12.64673 -12.55155 -12.41293 -12.37048 -12.26639 -12.11795 -11.88055 -11.75724 -11.51970 -11.51602 -10.92329 -10.37033 -10.11238 -10.01737 -9.80505 -9.38531 -9.33445 -8.47394 -5.95965 0.44438 0.52223 1.36459 1.42209 1.56158 1.68152 2.04525 2.08868 2.31005 2.84899 3.04530 3.20217 3.55176 3.78998 3.82905 3.92191 3.94989 4.07942 4.11017 4.15185 4.18415 4.31742 4.33815 4.43742 4.46521 4.50375 4.59899 4.62621 4.67148 4.71151 4.78066 4.81292 4.87634 4.89046 4.91503 4.97372 5.03607 5.14540 5.27978 5.31813 5.38520 5.41123 5.46902 5.55066 5.73090 5.77232 5.84842 6.07233 6.17392 6.31443 6.58917 6.60245 7.12621 7.31030 7.55834 8.11650 8.70198 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.041363 B = 0.001056 C = 0.001043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.763051 B =26511.045920 C =26849.483155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.106 4.106 3 C -0.134 4.134 4 C -0.127 4.127 5 C -0.099 4.099 6 C -0.072 4.072 7 C -0.094 4.094 8 C -0.129 4.129 9 C 0.503 3.497 10 O -0.594 6.594 11 N -0.715 5.715 12 C 0.126 3.874 13 C 0.060 3.940 14 N -0.688 5.688 15 C 0.068 3.932 16 C 0.434 3.566 17 O -0.626 6.626 18 N -0.571 5.571 19 C -0.335 4.335 20 H 0.077 0.923 21 C -0.010 4.010 22 N -0.919 5.919 23 Si 0.991 3.009 24 H -0.275 1.275 25 H -0.270 1.270 26 H -0.270 1.270 27 C -0.127 4.127 28 C -0.134 4.134 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.132 0.868 33 H 0.132 0.868 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.048 0.952 37 H 0.049 0.951 38 H 0.124 0.876 39 H 0.124 0.876 40 H 0.420 0.580 41 H 0.053 0.947 42 H 0.051 0.949 43 H 0.058 0.942 44 H 0.094 0.906 45 H 0.345 0.655 46 H 0.073 0.927 47 H 0.110 0.890 48 H 0.398 0.602 49 H 0.278 0.722 50 H 0.132 0.868 51 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.455 -0.951 -27.713 37.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.106 4.106 3 C -0.152 4.152 4 C -0.145 4.145 5 C -0.099 4.099 6 C -0.109 4.109 7 C -0.132 4.132 8 C -0.168 4.168 9 C 0.291 3.709 10 O -0.475 6.475 11 N -0.369 5.369 12 C 0.001 3.999 13 C -0.070 4.070 14 N -0.320 5.320 15 C -0.064 4.064 16 C 0.222 3.778 17 O -0.513 6.513 18 N -0.209 5.209 19 C -0.465 4.465 20 H 0.095 0.905 21 C -0.210 4.210 22 N -0.560 5.560 23 Si 0.815 3.185 24 H -0.200 1.200 25 H -0.195 1.195 26 H -0.196 1.196 27 C -0.145 4.145 28 C -0.152 4.152 29 H 0.096 0.904 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.150 0.850 33 H 0.150 0.850 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.142 0.858 39 H 0.142 0.858 40 H 0.257 0.743 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.112 0.888 45 H 0.163 0.837 46 H 0.091 0.909 47 H 0.128 0.872 48 H 0.232 0.768 49 H 0.088 0.912 50 H 0.150 0.850 51 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -26.365 -0.271 -26.390 37.304 hybrid contribution 1.139 -0.859 0.456 1.497 sum -25.226 -1.130 -25.934 36.196 Atomic orbital electron populations 1.20822 0.89934 1.03322 1.02927 1.20252 0.97306 0.93291 0.99766 1.21310 0.94569 0.98258 1.01081 1.21317 0.94518 0.98328 1.00316 1.20129 0.96755 0.93170 0.99801 1.20602 0.89742 1.04523 0.96059 1.21225 0.93688 1.01942 0.96367 1.21727 0.96590 1.07267 0.91224 1.21548 0.81836 0.74482 0.93006 1.90724 1.56896 1.51491 1.48357 1.45801 1.07357 1.75063 1.08674 1.21011 0.93850 1.01450 0.83565 1.22072 0.92871 1.02915 0.89101 1.59918 1.06617 1.51675 1.13838 1.21528 0.88863 1.03643 0.92348 1.20958 0.82401 0.82239 0.92208 1.90506 1.54481 1.56700 1.49595 1.41914 1.05882 1.64973 1.08117 1.19694 0.91955 1.49967 0.84856 0.90527 1.25993 0.95122 0.96196 1.03670 1.69664 1.02687 1.50320 1.33337 0.84903 0.78035 0.78393 0.77209 1.19958 1.19485 1.19556 1.21315 0.94512 0.98319 1.00318 1.21312 0.94569 0.98252 1.01081 0.90404 0.91058 0.91068 0.84964 0.85003 0.89250 0.89275 0.93274 0.93227 0.85798 0.85825 0.74293 0.92824 0.93009 0.92393 0.88765 0.83658 0.90872 0.87232 0.76821 0.91248 0.84985 0.84951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.05 10.01 71.24 0.71 -0.34 16 2 C -0.11 -1.50 5.88 -19.86 -0.12 -1.62 16 3 C -0.13 -1.93 9.70 22.27 0.22 -1.72 16 4 C -0.13 -1.84 9.70 22.27 0.22 -1.63 16 5 C -0.10 -1.40 5.13 -19.87 -0.10 -1.50 16 6 C -0.07 -0.68 5.34 29.84 0.16 -0.52 16 7 C -0.09 -1.31 4.49 30.59 0.14 -1.17 16 8 C -0.13 -1.23 5.70 29.85 0.17 -1.06 16 9 C 0.50 9.78 7.83 87.66 0.69 10.47 16 10 O -0.59 -18.40 15.98 -3.04 -0.05 -18.44 16 11 N -0.72 -11.12 5.56 -463.07 -2.57 -13.69 16 12 C 0.13 2.77 5.93 86.38 0.51 3.28 16 13 C 0.06 1.18 5.80 86.30 0.50 1.68 16 14 N -0.69 -20.86 6.13 -517.94 -3.17 -24.03 16 15 C 0.07 2.21 6.17 85.56 0.53 2.74 16 16 C 0.43 20.51 7.82 87.66 0.69 21.19 16 17 O -0.63 -35.13 15.78 -3.07 -0.05 -35.18 16 18 N -0.57 -29.04 5.29 -306.99 -1.62 -30.66 16 19 C -0.34 -19.07 9.68 84.04 0.81 -18.25 16 20 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 21 C -0.01 -0.53 5.50 84.92 0.47 -0.06 16 22 N -0.92 -49.07 13.05 21.66 0.28 -48.78 16 23 Si 0.99 42.88 29.55 68.60 2.03 44.90 16 24 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 25 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 26 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 27 C -0.13 -1.83 9.70 22.27 0.22 -1.61 16 28 C -0.13 -1.92 9.70 22.27 0.22 -1.71 16 29 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.07 0.57 8.09 -2.39 -0.02 0.55 16 31 H 0.07 0.57 8.09 -2.39 -0.02 0.55 16 32 H 0.13 1.43 8.06 -2.91 -0.02 1.41 16 33 H 0.13 1.49 8.06 -2.91 -0.02 1.47 16 34 H 0.09 0.57 8.09 -2.39 -0.02 0.55 16 35 H 0.09 0.58 8.09 -2.39 -0.02 0.56 16 36 H 0.05 0.90 8.10 -2.38 -0.02 0.89 16 37 H 0.05 0.91 8.10 -2.38 -0.02 0.89 16 38 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.12 0.53 8.14 -2.38 -0.02 0.51 16 40 H 0.42 3.15 8.47 -92.71 -0.79 2.36 16 41 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 43 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.34 11.29 8.43 -89.69 -0.76 10.53 16 46 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 47 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 48 H 0.40 18.93 7.90 -92.70 -0.73 18.20 16 49 H 0.28 13.84 8.31 -92.71 -0.77 13.06 16 50 H 0.13 1.47 8.06 -2.91 -0.02 1.45 16 51 H 0.13 1.42 8.06 -2.91 -0.02 1.39 16 Total: -1.00 -79.23 431.07 -0.47 -79.70 By element: Atomic # 1 Polarization: 39.34 SS G_CDS: -1.33 Total: 38.02 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: 6.02 Total: 8.18 kcal Atomic # 7 Polarization: -110.08 SS G_CDS: -7.09 Total: -117.17 kcal Atomic # 8 Polarization: -53.53 SS G_CDS: -0.10 Total: -53.62 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.90 kcal Total: -79.23 -0.47 -79.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133255725.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.291 kcal (2) G-P(sol) polarization free energy of solvation -79.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds