Wall clock time and date at job start Wed Apr 1 2020 05:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38241 * 119.99437 * 2 1 4 4 C 1.38238 * 119.99768 * 180.02562 * 3 2 1 5 5 C 1.50700 * 120.00117 * 179.97438 * 4 3 2 6 6 C 1.38234 * 120.00037 * 0.02562 * 4 3 2 7 7 C 1.38235 * 119.99836 * 0.02562 * 6 4 3 8 8 C 1.50706 * 119.99802 * 179.97438 * 7 6 4 9 9 C 1.53002 * 109.46925 * 90.00320 * 8 7 6 10 10 C 1.50696 * 109.47300 * 180.02562 * 9 8 7 11 11 O 1.21279 * 119.99697 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00141 * 179.97438 * 10 9 8 13 13 C 1.46496 * 119.99875 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.47037 * 180.02562 * 13 12 10 15 15 N 1.46906 * 109.47251 * 180.02562 * 14 13 12 16 16 C 1.46898 * 110.99888 * 180.02562 * 15 14 13 17 17 C 1.50704 * 109.47045 * 179.97438 * 16 15 14 18 18 O 1.21297 * 119.99522 * 0.02562 * 17 16 15 19 19 N 1.34766 * 120.00159 * 179.97438 * 17 16 15 20 20 C 1.37093 * 120.00268 * 180.02562 * 19 17 16 21 21 H 1.07998 * 119.99965 * 359.97438 * 20 19 17 22 22 C 1.38947 * 120.00535 * 179.97438 * 20 19 17 23 23 N 1.31408 * 120.00604 * 179.97438 * 22 20 19 24 24 Si 1.86808 * 119.99685 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.47237 * 89.99827 * 24 22 20 26 26 H 1.48504 * 109.46698 * 209.99889 * 24 22 20 27 27 H 1.48502 * 109.46787 * 329.99803 * 24 22 20 28 28 C 1.38231 * 120.00255 * 0.25368 * 7 6 4 29 29 H 1.09000 * 109.47051 * 90.00050 * 1 2 3 30 30 H 1.09000 * 109.46623 * 209.99780 * 1 2 3 31 31 H 1.08997 * 109.47526 * 329.99572 * 1 2 3 32 32 H 1.08001 * 120.00379 * 0.02562 * 3 2 1 33 33 H 1.09002 * 109.46946 * 270.02899 * 5 4 3 34 34 H 1.09003 * 109.47164 * 30.02317 * 5 4 3 35 35 H 1.08995 * 109.47693 * 150.02350 * 5 4 3 36 36 H 1.07997 * 119.99984 * 179.97438 * 6 4 3 37 37 H 1.09000 * 109.47318 * 209.99554 * 8 7 6 38 38 H 1.09000 * 109.47161 * 330.00185 * 8 7 6 39 39 H 1.09004 * 109.46930 * 299.99901 * 9 8 7 40 40 H 1.09004 * 109.47059 * 59.99503 * 9 8 7 41 41 H 0.96999 * 120.00043 * 0.02562 * 12 10 9 42 42 H 1.08996 * 109.47565 * 300.00629 * 13 12 10 43 43 H 1.09004 * 109.47374 * 60.00435 * 13 12 10 44 44 H 1.08996 * 109.47407 * 300.00665 * 14 13 12 45 45 H 1.09000 * 109.46986 * 60.00436 * 14 13 12 46 46 H 1.00894 * 111.00180 * 56.04445 * 15 14 13 47 47 H 1.08995 * 109.47296 * 299.99911 * 16 15 14 48 48 H 1.09005 * 109.47184 * 60.00486 * 16 15 14 49 49 H 0.97003 * 120.00437 * 0.02562 * 19 17 16 50 50 H 0.97002 * 120.00645 * 179.97438 * 23 22 20 51 51 H 1.07997 * 120.00101 * 179.72736 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1973 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.3339 2.5025 -0.0011 6 6 4.2717 0.0002 -0.0016 7 6 3.5806 -1.1969 -0.0027 8 6 4.3342 -2.5020 -0.0044 9 6 4.5897 -2.9453 1.4375 10 6 5.3438 -4.2500 1.4359 11 8 5.6466 -4.7740 0.3849 12 7 5.6817 -4.8346 2.6023 13 6 6.4143 -6.1032 2.6006 14 6 6.6699 -6.5464 4.0426 15 7 7.4051 -7.8182 4.0410 16 6 7.6684 -8.2758 5.4118 17 6 8.4218 -9.5804 5.3699 18 8 8.7113 -10.0794 4.3030 19 7 8.7747 -10.1919 6.5178 20 6 9.4605 -11.3783 6.4798 21 1 9.7176 -11.8232 5.5299 22 6 9.8248 -12.0086 7.6633 23 7 10.4817 -13.1461 7.6268 24 14 9.3795 -11.2395 9.3064 25 1 8.0496 -11.7368 9.7415 26 1 10.4014 -11.6085 10.3188 27 1 9.3335 -9.7620 9.1651 28 6 2.1983 -1.1970 -0.0080 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3632 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5139 32 1 1.6580 2.1326 0.0004 33 1 4.5147 2.8171 -1.0289 34 1 3.7452 3.2621 0.5131 35 1 5.2867 2.3723 0.5120 36 1 5.3517 0.0003 -0.0024 37 1 3.7450 -3.2612 -0.5188 38 1 5.2864 -2.3711 -0.5185 39 1 5.1789 -2.1861 1.9520 40 1 3.6374 -3.0762 1.9515 41 1 5.4392 -4.4157 3.4429 42 1 5.8251 -6.8624 2.0865 43 1 7.3664 -5.9723 2.0862 44 1 7.2590 -5.7872 4.5571 45 1 5.7177 -6.6774 4.5566 46 1 8.2624 -7.7397 3.5147 47 1 8.2639 -7.5286 5.9362 48 1 6.7228 -8.4194 5.9348 49 1 8.5434 -9.7926 7.3711 50 1 10.7364 -13.5859 8.4531 51 1 1.6584 -2.1324 -0.0133 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146752873.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:09 Heat of formation + Delta-G solvation = -67.077780 kcal Electronic energy + Delta-G solvation = -27820.472539 eV Core-core repulsion = 23718.717049 eV Total energy + Delta-G solvation = -4101.755491 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.30776 -39.69959 -38.52655 -36.47224 -34.87429 -34.42171 -33.94032 -33.81806 -31.69082 -31.06852 -29.38961 -27.77156 -27.10740 -26.40072 -24.92464 -23.57334 -22.18365 -21.15012 -20.98423 -20.35740 -19.42092 -18.40382 -17.40661 -16.68505 -16.51673 -16.22606 -16.18972 -15.89574 -15.49274 -14.96303 -14.78539 -14.54682 -14.38331 -14.19458 -13.80382 -13.66536 -13.58648 -13.46737 -13.27697 -13.11873 -13.05578 -12.98981 -12.77764 -12.57727 -12.39808 -12.27337 -11.91259 -11.70542 -11.63252 -11.59250 -11.50991 -11.30461 -11.22787 -11.16919 -10.61591 -10.13134 -9.98983 -9.59295 -9.29969 -8.98303 -8.95084 -8.64843 -8.26087 -8.19157 -6.32450 -3.84155 0.94338 0.96514 2.41046 2.82949 3.00263 3.05194 3.13479 3.30886 3.71179 4.07685 4.11444 4.27664 4.33261 4.35757 4.54040 4.70127 4.71092 4.74088 4.78669 4.85417 4.90477 4.92124 5.01509 5.10863 5.13766 5.17250 5.18943 5.20839 5.23414 5.30198 5.30912 5.42724 5.49640 5.54398 5.66201 5.73597 5.76500 5.80445 5.82905 5.83419 5.91144 6.14999 6.16796 6.17111 6.26868 6.63751 6.95446 7.22213 7.45887 7.56196 7.98085 8.12829 8.57847 8.93393 9.40521 9.80345 10.80638 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.025222 B = 0.001197 C = 0.001190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.868627 B =23380.234004 C =23531.778692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.080 4.080 3 C -0.128 4.128 4 C -0.081 4.081 5 C -0.115 4.115 6 C -0.123 4.123 7 C -0.073 4.073 8 C -0.066 4.066 9 C -0.133 4.133 10 C 0.511 3.489 11 O -0.537 6.537 12 N -0.731 5.731 13 C 0.119 3.881 14 C 0.050 3.950 15 N -0.666 5.666 16 C 0.050 3.950 17 C 0.449 3.551 18 O -0.563 6.563 19 N -0.590 5.590 20 C -0.306 4.306 21 H 0.120 0.880 22 C 0.042 3.958 23 N -0.881 5.881 24 Si 0.880 3.120 25 H -0.270 1.270 26 H -0.277 1.277 27 H -0.270 1.270 28 C -0.123 4.123 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.119 0.881 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.121 0.879 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.400 0.600 42 H 0.080 0.920 43 H 0.068 0.932 44 H 0.033 0.967 45 H 0.077 0.923 46 H 0.354 0.646 47 H 0.046 0.954 48 H 0.088 0.912 49 H 0.370 0.630 50 H 0.274 0.726 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.571 33.916 -9.746 39.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.080 4.080 3 C -0.146 4.146 4 C -0.081 4.081 5 C -0.172 4.172 6 C -0.141 4.141 7 C -0.073 4.073 8 C -0.103 4.103 9 C -0.173 4.173 10 C 0.297 3.703 11 O -0.413 6.413 12 N -0.383 5.383 13 C -0.005 4.005 14 C -0.080 4.080 15 N -0.299 5.299 16 C -0.083 4.083 17 C 0.234 3.766 18 O -0.445 6.445 19 N -0.229 5.229 20 C -0.435 4.435 21 H 0.138 0.862 22 C -0.161 4.161 23 N -0.521 5.521 24 Si 0.707 3.293 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.196 1.196 28 C -0.141 4.141 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.137 0.863 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.139 0.861 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.112 0.888 40 H 0.113 0.887 41 H 0.234 0.766 42 H 0.099 0.901 43 H 0.087 0.913 44 H 0.051 0.949 45 H 0.095 0.905 46 H 0.174 0.826 47 H 0.064 0.936 48 H 0.107 0.893 49 H 0.203 0.797 50 H 0.084 0.916 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -18.592 32.598 -11.192 39.161 hybrid contribution 0.328 1.246 2.271 2.611 sum -18.264 33.844 -8.922 39.479 Atomic orbital electron populations 1.20802 0.91186 1.02818 1.02403 1.19901 0.96029 0.93067 0.99044 1.20908 0.93547 0.97535 1.02567 1.19898 0.93798 0.95293 0.99070 1.20802 0.99943 0.94060 1.02397 1.20942 0.99733 0.91431 1.02009 1.19860 0.93659 0.94820 0.98919 1.20338 1.01009 0.93646 0.95347 1.21644 1.01473 0.94900 0.99305 1.20680 0.79462 0.86559 0.83588 1.90740 1.54337 1.65138 1.31135 1.45949 1.58905 1.24713 1.08743 1.21281 0.97247 0.84915 0.97060 1.22082 0.99518 0.90897 0.95533 1.59910 1.28653 1.27690 1.13644 1.21701 1.00358 0.96070 0.90155 1.19672 0.84940 0.87166 0.84811 1.90580 1.57946 1.66767 1.29206 1.42190 1.52136 1.22397 1.06188 1.19443 1.30934 0.96272 0.96849 0.86243 1.25036 0.97058 0.95963 0.98029 1.69619 1.38134 1.15913 1.28385 0.86668 0.79277 0.79188 0.84206 1.19582 1.20172 1.19568 1.20946 0.93546 0.97637 1.01961 0.91130 0.91436 0.91580 0.86291 0.91135 0.91581 0.91457 0.86085 0.90022 0.90061 0.88765 0.88701 0.76646 0.90144 0.91321 0.94922 0.90455 0.82607 0.93608 0.89338 0.79688 0.91585 0.86053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.54 10.01 36.01 0.36 -0.18 16 2 C -0.08 -0.54 5.88 -104.62 -0.62 -1.16 16 3 C -0.13 -0.85 9.36 -39.58 -0.37 -1.22 16 4 C -0.08 -0.54 5.88 -104.62 -0.62 -1.16 16 5 C -0.12 -0.53 10.01 36.01 0.36 -0.17 16 6 C -0.12 -0.88 9.36 -39.58 -0.37 -1.25 16 7 C -0.07 -0.53 5.13 -104.62 -0.54 -1.07 16 8 C -0.07 -0.50 4.64 -27.88 -0.13 -0.62 16 9 C -0.13 -0.86 5.68 -27.88 -0.16 -1.01 16 10 C 0.51 5.03 7.83 -10.99 -0.09 4.95 16 11 O -0.54 -7.69 15.98 5.56 0.09 -7.61 16 12 N -0.73 -6.08 5.56 -60.30 -0.33 -6.42 16 13 C 0.12 1.27 5.93 -4.04 -0.02 1.25 16 14 C 0.05 0.52 5.80 -3.82 -0.02 0.49 16 15 N -0.67 -9.90 6.12 -115.05 -0.70 -10.61 16 16 C 0.05 0.79 6.17 -4.98 -0.03 0.76 16 17 C 0.45 10.08 7.82 -10.99 -0.09 10.00 16 18 O -0.56 -15.15 15.78 5.54 0.09 -15.06 16 19 N -0.59 -13.91 5.09 -10.97 -0.06 -13.97 16 20 C -0.31 -8.65 10.16 -14.94 -0.15 -8.81 16 21 H 0.12 3.87 7.39 -52.49 -0.39 3.48 16 22 C 0.04 1.15 5.50 -17.47 -0.10 1.06 16 23 N -0.88 -25.67 13.96 55.50 0.77 -24.90 16 24 Si 0.88 19.15 27.74 -169.99 -4.71 14.44 16 25 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 26 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 27 H -0.27 -5.32 6.52 56.52 0.37 -4.95 16 28 C -0.12 -0.88 9.36 -39.59 -0.37 -1.25 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.28 8.09 -51.93 -0.42 -0.14 16 31 H 0.07 0.25 8.09 -51.93 -0.42 -0.17 16 32 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 33 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.07 0.25 8.09 -51.93 -0.42 -0.17 16 35 H 0.07 0.27 8.09 -51.93 -0.42 -0.15 16 36 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 37 H 0.08 0.68 8.04 -51.93 -0.42 0.27 16 38 H 0.08 0.68 8.04 -51.93 -0.42 0.26 16 39 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.40 2.09 8.47 -40.82 -0.35 1.74 16 42 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 46 H 0.35 5.52 8.43 -39.30 -0.33 5.19 16 47 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 49 H 0.37 7.60 5.76 -40.82 -0.24 7.36 16 50 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 51 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 LS Contribution 427.86 15.07 6.45 6.45 Total: -1.00 -35.70 427.86 -9.83 -45.53 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: -8.48 Total: 11.54 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: -2.94 Total: 0.61 kcal Atomic # 7 Polarization: -55.57 SS G_CDS: -0.32 Total: -55.89 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: 0.18 Total: -22.67 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -4.71 Total: 14.44 kcal Total LS contribution 6.45 Total: 6.45 kcal Total: -35.70 -9.83 -45.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146752873.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.547 kcal (2) G-P(sol) polarization free energy of solvation -35.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds