Wall clock time and date at job start Wed Apr 1 2020 05:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38241 * 119.99437 * 2 1 4 4 C 1.38238 * 119.99768 * 180.02562 * 3 2 1 5 5 C 1.50700 * 120.00117 * 179.97438 * 4 3 2 6 6 C 1.38234 * 120.00037 * 0.02562 * 4 3 2 7 7 C 1.38235 * 119.99836 * 0.02562 * 6 4 3 8 8 C 1.50706 * 119.99802 * 179.97438 * 7 6 4 9 9 C 1.53002 * 109.46925 * 90.00320 * 8 7 6 10 10 C 1.50696 * 109.47300 * 180.02562 * 9 8 7 11 11 O 1.21279 * 119.99697 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00141 * 179.97438 * 10 9 8 13 13 C 1.46496 * 119.99875 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.47037 * 180.02562 * 13 12 10 15 15 N 1.46906 * 109.47251 * 180.02562 * 14 13 12 16 16 C 1.46898 * 110.99888 * 180.02562 * 15 14 13 17 17 C 1.50704 * 109.47045 * 179.97438 * 16 15 14 18 18 O 1.21297 * 119.99522 * 0.02562 * 17 16 15 19 19 N 1.34766 * 120.00159 * 179.97438 * 17 16 15 20 20 C 1.37093 * 120.00268 * 180.02562 * 19 17 16 21 21 H 1.07998 * 119.99965 * 359.97438 * 20 19 17 22 22 C 1.38947 * 120.00535 * 179.97438 * 20 19 17 23 23 N 1.31408 * 120.00604 * 179.97438 * 22 20 19 24 24 Si 1.86808 * 119.99685 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.47237 * 89.99827 * 24 22 20 26 26 H 1.48504 * 109.46698 * 209.99889 * 24 22 20 27 27 H 1.48502 * 109.46787 * 329.99803 * 24 22 20 28 28 C 1.38231 * 120.00255 * 0.25368 * 7 6 4 29 29 H 1.09000 * 109.47051 * 90.00050 * 1 2 3 30 30 H 1.09000 * 109.46623 * 209.99780 * 1 2 3 31 31 H 1.08997 * 109.47526 * 329.99572 * 1 2 3 32 32 H 1.08001 * 120.00379 * 0.02562 * 3 2 1 33 33 H 1.09002 * 109.46946 * 270.02899 * 5 4 3 34 34 H 1.09003 * 109.47164 * 30.02317 * 5 4 3 35 35 H 1.08995 * 109.47693 * 150.02350 * 5 4 3 36 36 H 1.07997 * 119.99984 * 179.97438 * 6 4 3 37 37 H 1.09000 * 109.47318 * 209.99554 * 8 7 6 38 38 H 1.09000 * 109.47161 * 330.00185 * 8 7 6 39 39 H 1.09004 * 109.46930 * 299.99901 * 9 8 7 40 40 H 1.09004 * 109.47059 * 59.99503 * 9 8 7 41 41 H 0.96999 * 120.00043 * 0.02562 * 12 10 9 42 42 H 1.08996 * 109.47565 * 300.00629 * 13 12 10 43 43 H 1.09004 * 109.47374 * 60.00435 * 13 12 10 44 44 H 1.08996 * 109.47407 * 300.00665 * 14 13 12 45 45 H 1.09000 * 109.46986 * 60.00436 * 14 13 12 46 46 H 1.00894 * 111.00180 * 56.04445 * 15 14 13 47 47 H 1.08995 * 109.47296 * 299.99911 * 16 15 14 48 48 H 1.09005 * 109.47184 * 60.00486 * 16 15 14 49 49 H 0.97003 * 120.00437 * 0.02562 * 19 17 16 50 50 H 0.97002 * 120.00645 * 179.97438 * 23 22 20 51 51 H 1.07997 * 120.00101 * 179.72736 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1973 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.3339 2.5025 -0.0011 6 6 4.2717 0.0002 -0.0016 7 6 3.5806 -1.1969 -0.0027 8 6 4.3342 -2.5020 -0.0044 9 6 4.5897 -2.9453 1.4375 10 6 5.3438 -4.2500 1.4359 11 8 5.6466 -4.7740 0.3849 12 7 5.6817 -4.8346 2.6023 13 6 6.4143 -6.1032 2.6006 14 6 6.6699 -6.5464 4.0426 15 7 7.4051 -7.8182 4.0410 16 6 7.6684 -8.2758 5.4118 17 6 8.4218 -9.5804 5.3699 18 8 8.7113 -10.0794 4.3030 19 7 8.7747 -10.1919 6.5178 20 6 9.4605 -11.3783 6.4798 21 1 9.7176 -11.8232 5.5299 22 6 9.8248 -12.0086 7.6633 23 7 10.4817 -13.1461 7.6268 24 14 9.3795 -11.2395 9.3064 25 1 8.0496 -11.7368 9.7415 26 1 10.4014 -11.6085 10.3188 27 1 9.3335 -9.7620 9.1651 28 6 2.1983 -1.1970 -0.0080 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3632 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5139 32 1 1.6580 2.1326 0.0004 33 1 4.5147 2.8171 -1.0289 34 1 3.7452 3.2621 0.5131 35 1 5.2867 2.3723 0.5120 36 1 5.3517 0.0003 -0.0024 37 1 3.7450 -3.2612 -0.5188 38 1 5.2864 -2.3711 -0.5185 39 1 5.1789 -2.1861 1.9520 40 1 3.6374 -3.0762 1.9515 41 1 5.4392 -4.4157 3.4429 42 1 5.8251 -6.8624 2.0865 43 1 7.3664 -5.9723 2.0862 44 1 7.2590 -5.7872 4.5571 45 1 5.7177 -6.6774 4.5566 46 1 8.2624 -7.7397 3.5147 47 1 8.2639 -7.5286 5.9362 48 1 6.7228 -8.4194 5.9348 49 1 8.5434 -9.7926 7.3711 50 1 10.7364 -13.5859 8.4531 51 1 1.6584 -2.1324 -0.0133 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146752873.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:08 Heat of formation + Delta-G solvation = -93.644962 kcal Electronic energy + Delta-G solvation = -27821.624579 eV Core-core repulsion = 23718.717049 eV Total energy + Delta-G solvation = -4102.907530 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.97496 -40.37689 -40.24868 -37.53657 -36.04459 -35.43936 -35.20258 -34.35684 -33.74959 -31.72154 -30.36069 -28.23891 -27.76069 -27.53278 -25.96144 -24.90774 -23.06428 -21.65459 -21.59073 -21.29493 -20.98997 -20.28896 -18.25973 -17.62651 -17.34660 -17.16756 -17.07594 -16.91643 -16.69339 -16.30811 -15.69435 -15.48791 -15.28688 -15.06509 -14.88082 -14.81383 -14.46579 -14.38438 -14.05437 -13.99329 -13.87487 -13.73565 -13.68310 -13.40322 -13.32519 -13.30094 -12.96748 -12.78575 -12.58869 -12.40500 -12.38719 -12.15084 -12.10249 -11.96967 -11.80067 -11.73419 -11.51195 -10.97639 -10.45900 -10.25019 -10.12590 -9.48497 -9.42649 -9.38232 -8.40977 -6.02590 0.44045 0.47692 1.30790 1.37152 1.45972 1.64145 1.95588 2.06025 2.24088 2.78188 2.85565 3.15365 3.45614 3.69015 3.86318 3.89074 3.95544 3.98518 4.09973 4.17205 4.21471 4.27518 4.30499 4.45228 4.47569 4.49264 4.52883 4.59339 4.68296 4.69715 4.77205 4.81627 4.83794 4.85915 4.92163 4.97127 5.07185 5.07911 5.14522 5.31889 5.39267 5.40334 5.52710 5.68288 5.68648 5.76880 5.87978 6.01005 6.16827 6.30181 6.55630 6.59847 6.88194 7.27164 7.39673 7.96860 8.76811 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.025222 B = 0.001197 C = 0.001190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.868627 B =23380.234004 C =23531.778692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.088 4.088 3 C -0.139 4.139 4 C -0.088 4.088 5 C -0.114 4.114 6 C -0.136 4.136 7 C -0.077 4.077 8 C -0.062 4.062 9 C -0.121 4.121 10 C 0.508 3.492 11 O -0.589 6.589 12 N -0.715 5.715 13 C 0.125 3.875 14 C 0.060 3.940 15 N -0.692 5.692 16 C 0.066 3.934 17 C 0.445 3.555 18 O -0.617 6.617 19 N -0.589 5.589 20 C -0.332 4.332 21 H 0.053 0.947 22 C -0.015 4.015 23 N -0.935 5.935 24 Si 0.967 3.033 25 H -0.257 1.257 26 H -0.276 1.276 27 H -0.228 1.228 28 C -0.137 4.137 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.134 0.866 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.128 0.872 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.117 0.883 40 H 0.116 0.884 41 H 0.419 0.581 42 H 0.054 0.946 43 H 0.052 0.948 44 H 0.060 0.940 45 H 0.097 0.903 46 H 0.345 0.655 47 H 0.083 0.917 48 H 0.120 0.880 49 H 0.391 0.609 50 H 0.279 0.721 51 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.642 37.790 -6.663 43.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.088 4.088 3 C -0.157 4.157 4 C -0.088 4.088 5 C -0.171 4.171 6 C -0.154 4.154 7 C -0.077 4.077 8 C -0.099 4.099 9 C -0.160 4.160 10 C 0.296 3.704 11 O -0.470 6.470 12 N -0.368 5.368 13 C 0.000 4.000 14 C -0.069 4.069 15 N -0.325 5.325 16 C -0.066 4.066 17 C 0.233 3.767 18 O -0.502 6.502 19 N -0.231 5.231 20 C -0.462 4.462 21 H 0.071 0.929 22 C -0.213 4.213 23 N -0.576 5.576 24 Si 0.787 3.213 25 H -0.181 1.181 26 H -0.201 1.201 27 H -0.151 1.151 28 C -0.155 4.155 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.151 0.849 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.145 0.855 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.135 0.865 40 H 0.135 0.865 41 H 0.257 0.743 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.078 0.922 45 H 0.115 0.885 46 H 0.164 0.836 47 H 0.101 0.899 48 H 0.138 0.862 49 H 0.227 0.773 50 H 0.089 0.911 51 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -20.697 36.527 -8.075 42.753 hybrid contribution 0.979 0.012 1.142 1.504 sum -19.718 36.539 -6.933 42.095 Atomic orbital electron populations 1.20835 0.89851 1.03555 1.02871 1.20182 0.97168 0.92951 0.98491 1.21185 0.93794 0.98213 1.02463 1.20183 0.94148 0.95975 0.98496 1.20835 1.00109 0.93287 1.02871 1.21107 1.00234 0.91618 1.02473 1.19842 0.93825 0.94620 0.99419 1.20239 1.00121 0.93588 0.95995 1.21619 1.02250 0.93239 0.98925 1.21314 0.78842 0.87252 0.83022 1.90725 1.56484 1.66681 1.33071 1.45772 1.57911 1.23686 1.09424 1.21045 0.96270 0.85346 0.97342 1.22072 1.00122 0.89511 0.95180 1.59882 1.28660 1.30698 1.13223 1.21624 1.01130 0.92467 0.91418 1.21072 0.83432 0.88732 0.83476 1.90560 1.59628 1.68717 1.31303 1.41999 1.52158 1.21200 1.07714 1.19018 1.33358 0.98791 0.94993 0.92904 1.26151 0.95968 0.96112 1.03115 1.69810 1.39488 1.18044 1.30256 0.85336 0.79175 0.80423 0.76373 1.18130 1.20115 1.15106 1.21109 0.93625 0.98253 1.02468 0.90732 0.90957 0.90612 0.84854 0.90734 0.90621 0.90943 0.85452 0.91435 0.91397 0.86521 0.86549 0.74334 0.92739 0.92915 0.92168 0.88518 0.83603 0.89886 0.86244 0.77308 0.91129 0.85484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 10.01 71.24 0.71 -0.17 16 2 C -0.09 -1.08 5.88 -19.87 -0.12 -1.19 16 3 C -0.14 -1.65 9.36 22.27 0.21 -1.44 16 4 C -0.09 -1.07 5.88 -19.87 -0.12 -1.19 16 5 C -0.11 -0.87 10.01 71.24 0.71 -0.16 16 6 C -0.14 -1.82 9.36 22.27 0.21 -1.61 16 7 C -0.08 -1.08 5.13 -19.86 -0.10 -1.18 16 8 C -0.06 -0.92 4.64 29.85 0.14 -0.78 16 9 C -0.12 -1.34 5.68 29.85 0.17 -1.17 16 10 C 0.51 9.54 7.83 87.66 0.69 10.23 16 11 O -0.59 -17.37 15.98 -3.03 -0.05 -17.42 16 12 N -0.71 -10.41 5.56 -463.07 -2.57 -12.98 16 13 C 0.12 2.54 5.93 86.38 0.51 3.05 16 14 C 0.06 1.05 5.80 86.30 0.50 1.55 16 15 N -0.69 -19.24 6.12 -517.92 -3.17 -22.41 16 16 C 0.07 1.86 6.17 85.56 0.53 2.38 16 17 C 0.44 19.79 7.82 87.66 0.69 20.48 16 18 O -0.62 -34.53 15.78 -3.08 -0.05 -34.58 16 19 N -0.59 -27.33 5.09 -306.99 -1.56 -28.89 16 20 C -0.33 -19.49 10.16 84.04 0.85 -18.64 16 21 H 0.05 3.72 7.39 -2.91 -0.02 3.70 16 22 C -0.01 -0.82 5.50 84.93 0.47 -0.36 16 23 N -0.94 -56.46 13.96 21.66 0.30 -56.16 16 24 Si 0.97 38.03 27.74 68.60 1.90 39.93 16 25 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 26 H -0.28 -10.82 7.11 99.48 0.71 -10.11 16 27 H -0.23 -7.36 6.52 99.48 0.65 -6.71 16 28 C -0.14 -1.84 9.36 22.27 0.21 -1.63 16 29 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.07 0.48 8.09 -2.39 -0.02 0.46 16 31 H 0.07 0.43 8.09 -2.39 -0.02 0.41 16 32 H 0.13 1.10 8.06 -2.91 -0.02 1.08 16 33 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.07 0.42 8.09 -2.39 -0.02 0.40 16 35 H 0.07 0.47 8.09 -2.39 -0.02 0.45 16 36 H 0.13 1.43 8.06 -2.91 -0.02 1.41 16 37 H 0.07 1.18 8.04 -2.39 -0.02 1.16 16 38 H 0.07 1.17 8.04 -2.39 -0.02 1.16 16 39 H 0.12 0.82 8.14 -2.38 -0.02 0.80 16 40 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.42 2.84 8.47 -92.71 -0.79 2.06 16 42 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.35 10.59 8.43 -89.70 -0.76 9.84 16 47 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 48 H 0.12 2.72 8.14 -2.38 -0.02 2.70 16 49 H 0.39 14.69 5.76 -92.71 -0.53 14.16 16 50 H 0.28 15.36 8.31 -92.71 -0.77 14.59 16 51 H 0.13 1.46 8.06 -2.91 -0.02 1.43 16 Total: -1.00 -85.79 427.86 -0.13 -85.91 By element: Atomic # 1 Polarization: 39.61 SS G_CDS: -1.19 Total: 38.43 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: 6.26 Total: 8.17 kcal Atomic # 7 Polarization: -113.44 SS G_CDS: -7.01 Total: -120.45 kcal Atomic # 8 Polarization: -51.89 SS G_CDS: -0.10 Total: -51.99 kcal Atomic # 14 Polarization: 38.03 SS G_CDS: 1.90 Total: 39.93 kcal Total: -85.79 -0.13 -85.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146752873.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.731 kcal (2) G-P(sol) polarization free energy of solvation -85.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds