Wall clock time and date at job start Wed Apr 1 2020 05:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50706 * 110.43385 * 2 1 4 4 O 1.21280 * 120.00149 * 240.89334 * 3 2 1 5 5 N 1.34780 * 120.00015 * 60.89700 * 3 2 1 6 6 C 1.47289 * 135.91393 * 359.62259 * 5 3 2 7 7 C 1.52539 * 87.56979 * 154.00364 * 6 5 3 8 8 C 1.47296 * 135.91413 * 180.02562 * 5 3 2 9 9 C 1.53138 * 116.54482 * 268.65450 * 7 6 5 10 10 C 1.54690 * 104.56296 * 228.36005 * 9 7 6 11 11 N 1.48659 * 104.66115 * 23.67826 * 10 9 7 12 12 C 1.46901 * 110.99978 * 201.53540 * 11 10 9 13 13 C 1.50703 * 109.47128 * 290.12638 * 12 11 10 14 14 O 1.21295 * 119.99698 * 0.02562 * 13 12 11 15 15 N 1.34765 * 120.00356 * 179.97438 * 13 12 11 16 16 C 1.37102 * 120.00594 * 180.02562 * 15 13 12 17 17 H 1.08002 * 119.99753 * 359.97438 * 16 15 13 18 18 C 1.38949 * 120.00302 * 180.02562 * 16 15 13 19 19 N 1.31410 * 119.99820 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 119.99962 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.47213 * 90.00244 * 20 18 16 22 22 H 1.48498 * 109.46929 * 209.99793 * 20 18 16 23 23 H 1.48496 * 109.47160 * 329.99744 * 20 18 16 24 24 C 1.48851 * 104.43613 * 321.21425 * 11 10 9 25 25 C 1.51104 * 110.38772 * 122.34800 * 2 1 3 26 26 C 1.30527 * 111.10523 * 135.49310 * 25 2 1 27 27 C 1.51104 * 111.10149 * 359.61668 * 26 25 2 28 28 C 1.54632 * 110.38818 * 237.65297 * 2 1 3 29 29 H 1.09004 * 109.47118 * 299.10532 * 1 2 3 30 30 H 1.09002 * 109.47138 * 59.10607 * 1 2 3 31 31 H 1.09001 * 109.47023 * 179.10369 * 1 2 3 32 32 H 1.08993 * 113.52467 * 268.65495 * 6 5 3 33 33 H 1.09001 * 113.51800 * 39.26419 * 6 5 3 34 34 H 1.08991 * 113.52193 * 320.74657 * 8 5 3 35 35 H 1.08998 * 113.51868 * 91.28236 * 8 5 3 36 36 H 1.08997 * 110.41566 * 347.13050 * 9 7 6 37 37 H 1.09003 * 110.41663 * 109.58816 * 9 7 6 38 38 H 1.09001 * 110.39708 * 142.47689 * 10 9 7 39 39 H 1.09004 * 110.39819 * 264.88331 * 10 9 7 40 40 H 1.08997 * 109.47166 * 50.12247 * 12 11 10 41 41 H 1.08998 * 109.47277 * 170.13207 * 12 11 10 42 42 H 0.97003 * 120.00345 * 359.97438 * 15 13 12 43 43 H 0.96996 * 120.00144 * 179.97438 * 19 18 16 44 44 H 1.08991 * 110.47220 * 279.67577 * 24 11 10 45 45 H 1.08998 * 110.46888 * 157.06541 * 24 11 10 46 46 H 1.08002 * 124.44506 * 315.22319 * 25 2 1 47 47 H 1.07991 * 124.44863 * 179.73328 * 26 25 2 48 48 H 1.08996 * 110.52393 * 225.02179 * 27 26 25 49 49 H 1.08993 * 110.29475 * 102.72697 * 27 26 25 50 50 H 1.09002 * 111.03487 * 334.58456 * 28 2 1 51 51 H 1.09000 * 111.03782 * 98.48492 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0561 1.4122 0.0000 4 8 2.7466 1.8021 -0.9177 5 7 1.7594 2.2419 1.0199 6 6 0.9776 2.1507 2.2648 7 6 1.8737 3.2474 2.8314 8 6 2.0695 3.6380 1.3725 9 6 3.1240 2.7874 3.5866 10 6 3.1062 3.6024 4.9013 11 7 1.6795 3.9721 5.0954 12 6 1.5535 5.1384 5.9797 13 6 1.9312 4.7465 7.3850 14 8 2.2722 3.6077 7.6260 15 7 1.8910 5.6614 8.3736 16 6 2.2351 5.3050 9.6520 17 1 2.5379 4.2909 9.8669 18 6 2.1931 6.2483 10.6714 19 7 2.5224 5.9065 11.8968 20 14 1.6686 8.0023 10.3000 21 1 0.1977 8.1243 10.4639 22 1 2.3498 8.9315 11.2368 23 1 2.0412 8.3453 8.9040 24 6 1.1876 4.2855 3.7259 25 6 2.0563 -0.7578 1.1966 26 6 3.0341 -1.5528 0.8565 27 6 3.3166 -1.4646 -0.6253 28 6 2.0686 -0.7755 -1.2245 29 1 -0.3633 0.4999 0.8979 30 1 -0.3633 0.5277 -0.8819 31 1 -0.3633 -1.0276 -0.0161 32 1 -0.0624 2.4555 2.1488 33 1 1.0832 1.1936 2.7756 34 1 3.0920 3.9302 1.1337 35 1 1.3308 4.3527 1.0097 36 1 3.0681 1.7201 3.8000 37 1 4.0212 3.0145 3.0106 38 1 3.4566 2.9904 5.7324 39 1 3.7205 4.4974 4.8019 40 1 2.2168 5.9307 5.6328 41 1 0.5235 5.4949 5.9664 42 1 1.6193 6.5724 8.1807 43 1 2.4935 6.5650 12.6084 44 1 1.4836 5.2936 3.4360 45 1 0.1044 4.1758 3.6755 46 1 1.6765 -0.6521 2.2021 47 1 3.5695 -2.1913 1.5435 48 1 3.4413 -2.4605 -1.0505 49 1 4.2065 -0.8616 -0.8053 50 1 1.3436 -1.5119 -1.5712 51 1 2.3457 -0.0937 -2.0286 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001148052265.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:03 Heat of formation + Delta-G solvation = 5.427384 kcal Electronic energy + Delta-G solvation = -30908.639470 eV Core-core repulsion = 26810.028039 eV Total energy + Delta-G solvation = -4098.611431 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.49259 -40.02713 -38.56428 -37.50161 -36.47358 -33.94448 -32.32395 -31.72800 -31.24141 -29.66134 -29.10176 -27.56264 -26.46262 -25.72803 -24.98373 -23.82380 -21.87653 -21.33976 -19.93600 -19.47492 -19.00125 -18.74907 -18.17849 -17.04818 -16.60647 -16.21499 -15.89708 -15.61376 -15.39914 -15.03133 -14.81674 -14.55994 -14.35615 -13.97266 -13.74821 -13.46025 -13.41072 -13.19501 -12.97782 -12.68507 -12.55859 -12.46721 -12.22315 -12.18236 -12.15790 -11.82438 -11.66605 -11.54916 -11.48332 -11.31828 -11.23556 -11.20514 -11.07116 -10.91121 -10.60901 -10.46928 -10.18119 -9.98626 -9.56519 -9.19904 -8.93305 -8.64887 -8.20111 -8.12805 -6.31914 -3.83316 1.81754 2.40942 2.61130 3.00978 3.05517 3.13936 3.71769 3.76160 4.08560 4.10624 4.13209 4.14165 4.24737 4.36697 4.62876 4.70177 4.78313 4.81857 4.84895 5.00092 5.07387 5.14543 5.19074 5.20194 5.24145 5.28268 5.33395 5.34504 5.43075 5.46503 5.48385 5.54423 5.58740 5.60038 5.67704 5.71115 5.72106 5.76050 5.77507 5.89423 5.91183 5.97326 6.09155 6.14752 6.36390 6.50400 6.97558 7.05049 7.47702 7.57394 7.92388 8.13566 8.59381 8.94589 9.41700 9.82746 10.81244 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.025879 B = 0.002000 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.695057 B =13997.280395 C =14464.049036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.053 4.053 3 C 0.561 3.439 4 O -0.542 6.542 5 N -0.640 5.640 6 C 0.116 3.884 7 C -0.097 4.097 8 C 0.115 3.885 9 C -0.094 4.094 10 C 0.037 3.963 11 N -0.483 5.483 12 C 0.031 3.969 13 C 0.454 3.546 14 O -0.559 6.559 15 N -0.592 5.592 16 C -0.304 4.304 17 H 0.120 0.880 18 C 0.041 3.959 19 N -0.882 5.882 20 Si 0.880 3.120 21 H -0.271 1.271 22 H -0.277 1.277 23 H -0.270 1.270 24 C 0.047 3.953 25 C -0.163 4.163 26 C -0.148 4.148 27 C -0.104 4.104 28 C -0.108 4.108 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.102 0.898 39 H 0.039 0.961 40 H 0.051 0.949 41 H 0.091 0.909 42 H 0.370 0.630 43 H 0.273 0.727 44 H 0.051 0.949 45 H 0.087 0.913 46 H 0.131 0.869 47 H 0.130 0.870 48 H 0.073 0.927 49 H 0.078 0.922 50 H 0.078 0.922 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.373 -7.821 -25.548 27.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.056 4.056 3 C 0.351 3.649 4 O -0.420 6.420 5 N -0.374 5.374 6 C -0.007 4.007 7 C -0.098 4.098 8 C -0.008 4.008 9 C -0.132 4.132 10 C -0.090 4.090 11 N -0.207 5.207 12 C -0.101 4.101 13 C 0.239 3.761 14 O -0.441 6.441 15 N -0.232 5.232 16 C -0.432 4.432 17 H 0.137 0.863 18 C -0.162 4.162 19 N -0.522 5.522 20 Si 0.706 3.294 21 H -0.196 1.196 22 H -0.202 1.202 23 H -0.196 1.196 24 C -0.082 4.082 25 C -0.181 4.181 26 C -0.165 4.165 27 C -0.141 4.141 28 C -0.146 4.146 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.107 0.893 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.120 0.880 39 H 0.058 0.942 40 H 0.069 0.931 41 H 0.109 0.891 42 H 0.202 0.798 43 H 0.084 0.916 44 H 0.069 0.931 45 H 0.105 0.895 46 H 0.149 0.851 47 H 0.147 0.853 48 H 0.092 0.908 49 H 0.097 0.903 50 H 0.096 0.904 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.989 -8.907 -25.575 27.374 hybrid contribution -0.038 2.314 -0.243 2.327 sum -4.028 -6.592 -25.818 26.949 Atomic orbital electron populations 1.21806 0.91992 1.03005 1.02531 1.20577 0.97193 0.91630 0.96164 1.19909 0.79573 0.86073 0.79385 1.90674 1.39219 1.77126 1.34938 1.49604 1.52049 1.13575 1.22204 1.23121 0.95738 0.99937 0.81858 1.22122 0.97437 0.96709 0.93530 1.22941 1.02189 0.84109 0.91527 1.21977 0.95171 1.00972 0.95061 1.23268 0.88939 0.98992 0.97851 1.65206 1.16579 1.32201 1.06665 1.22101 1.02125 0.92081 0.93759 1.19589 0.84513 0.86411 0.85550 1.90547 1.50820 1.19606 1.83083 1.42209 1.61768 1.10421 1.08804 1.19416 1.42370 1.00001 0.81438 0.86286 1.25040 0.97707 0.98396 0.95089 1.69618 1.47412 1.35061 1.00090 0.86673 0.79527 0.84780 0.78397 1.19608 1.20224 1.19572 1.22890 1.00272 0.96313 0.88731 1.23063 0.99040 0.98106 0.97847 1.23414 0.97161 0.98706 0.97266 1.21410 0.98869 1.00930 0.92897 1.22502 0.96950 0.98692 0.96460 0.91818 0.92124 0.91142 0.89327 0.89672 0.90273 0.89591 0.90450 0.91120 0.87994 0.94246 0.93092 0.89097 0.79763 0.91631 0.93127 0.89518 0.85141 0.85268 0.90794 0.90326 0.90358 0.89193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 8.39 37.15 0.31 -0.66 16 2 C -0.05 -0.48 0.64 -155.76 -0.10 -0.57 16 3 C 0.56 6.58 6.79 -10.98 -0.07 6.51 16 4 O -0.54 -8.26 16.22 5.56 0.09 -8.17 16 5 N -0.64 -6.42 3.61 -185.17 -0.67 -7.09 16 6 C 0.12 0.96 5.86 -7.64 -0.04 0.92 16 7 C -0.10 -0.91 1.29 -154.92 -0.20 -1.11 16 8 C 0.12 1.05 7.92 -7.76 -0.06 0.99 16 9 C -0.09 -1.05 6.53 -25.77 -0.17 -1.21 16 10 C 0.04 0.53 5.83 -1.96 -0.01 0.52 16 11 N -0.48 -7.00 5.06 -231.59 -1.17 -8.17 16 12 C 0.03 0.49 5.30 -4.97 -0.03 0.47 16 13 C 0.45 9.96 7.59 -10.99 -0.08 9.87 16 14 O -0.56 -14.47 14.43 5.54 0.08 -14.39 16 15 N -0.59 -13.78 5.09 -10.96 -0.06 -13.84 16 16 C -0.30 -8.45 10.16 -14.93 -0.15 -8.60 16 17 H 0.12 3.80 7.39 -52.49 -0.39 3.41 16 18 C 0.04 1.10 5.50 -17.47 -0.10 1.00 16 19 N -0.88 -25.53 13.96 55.50 0.77 -24.76 16 20 Si 0.88 19.09 27.74 -169.99 -4.71 14.38 16 21 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 22 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 23 H -0.27 -5.32 6.52 56.52 0.37 -4.95 16 24 C 0.05 0.47 5.95 -2.61 -0.02 0.46 16 25 C -0.16 -1.39 8.74 -35.70 -0.31 -1.70 16 26 C -0.15 -1.22 10.78 -35.70 -0.38 -1.61 16 27 C -0.10 -0.86 6.81 -26.82 -0.18 -1.04 16 28 C -0.11 -0.93 6.05 -25.01 -0.15 -1.08 16 29 H 0.06 0.42 6.53 -51.93 -0.34 0.08 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.43 8.13 -51.93 -0.42 0.00 16 32 H 0.09 0.60 7.97 -51.93 -0.41 0.18 16 33 H 0.08 0.70 6.35 -51.93 -0.33 0.37 16 34 H 0.08 0.78 7.93 -51.93 -0.41 0.37 16 35 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.88 7.85 -51.93 -0.41 0.47 16 37 H 0.07 0.75 7.83 -51.93 -0.41 0.35 16 38 H 0.10 1.79 6.93 -51.93 -0.36 1.43 16 39 H 0.04 0.55 7.81 -51.93 -0.41 0.14 16 40 H 0.05 0.71 7.88 -51.93 -0.41 0.30 16 41 H 0.09 1.23 8.13 -51.93 -0.42 0.81 16 42 H 0.37 7.54 5.76 -40.82 -0.24 7.30 16 43 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 44 H 0.05 0.46 7.98 -51.93 -0.41 0.05 16 45 H 0.09 0.77 7.86 -51.93 -0.41 0.36 16 46 H 0.13 1.02 6.82 -52.49 -0.36 0.66 16 47 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 48 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 49 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 50 H 0.08 0.54 7.90 -51.93 -0.41 0.13 16 51 H 0.09 0.91 6.91 -51.93 -0.36 0.55 16 LS Contribution 399.83 15.07 6.03 6.03 Total: -1.00 -34.22 399.83 -9.57 -43.80 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: -8.18 Total: 9.08 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: -1.75 Total: 3.14 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: -1.12 Total: -53.86 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: 0.17 Total: -22.57 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -4.71 Total: 14.38 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.22 -9.57 -43.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148052265.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.227 kcal (2) G-P(sol) polarization free energy of solvation -34.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds