Wall clock time and date at job start Wed Apr 1 2020 05:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50706 * 110.43385 * 2 1 4 4 O 1.21280 * 120.00149 * 240.89334 * 3 2 1 5 5 N 1.34780 * 120.00015 * 60.89700 * 3 2 1 6 6 C 1.47289 * 135.91393 * 359.62259 * 5 3 2 7 7 C 1.52539 * 87.56979 * 154.00364 * 6 5 3 8 8 C 1.47296 * 135.91413 * 180.02562 * 5 3 2 9 9 C 1.53138 * 116.54482 * 268.65450 * 7 6 5 10 10 C 1.54690 * 104.56296 * 228.36005 * 9 7 6 11 11 N 1.48659 * 104.66115 * 23.67826 * 10 9 7 12 12 C 1.46901 * 110.99978 * 201.53540 * 11 10 9 13 13 C 1.50703 * 109.47128 * 290.12638 * 12 11 10 14 14 O 1.21295 * 119.99698 * 0.02562 * 13 12 11 15 15 N 1.34765 * 120.00356 * 179.97438 * 13 12 11 16 16 C 1.37102 * 120.00594 * 180.02562 * 15 13 12 17 17 H 1.08002 * 119.99753 * 359.97438 * 16 15 13 18 18 C 1.38949 * 120.00302 * 180.02562 * 16 15 13 19 19 N 1.31410 * 119.99820 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 119.99962 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.47213 * 90.00244 * 20 18 16 22 22 H 1.48498 * 109.46929 * 209.99793 * 20 18 16 23 23 H 1.48496 * 109.47160 * 329.99744 * 20 18 16 24 24 C 1.48851 * 104.43613 * 321.21425 * 11 10 9 25 25 C 1.51104 * 110.38772 * 122.34800 * 2 1 3 26 26 C 1.30527 * 111.10523 * 135.49310 * 25 2 1 27 27 C 1.51104 * 111.10149 * 359.61668 * 26 25 2 28 28 C 1.54632 * 110.38818 * 237.65297 * 2 1 3 29 29 H 1.09004 * 109.47118 * 299.10532 * 1 2 3 30 30 H 1.09002 * 109.47138 * 59.10607 * 1 2 3 31 31 H 1.09001 * 109.47023 * 179.10369 * 1 2 3 32 32 H 1.08993 * 113.52467 * 268.65495 * 6 5 3 33 33 H 1.09001 * 113.51800 * 39.26419 * 6 5 3 34 34 H 1.08991 * 113.52193 * 320.74657 * 8 5 3 35 35 H 1.08998 * 113.51868 * 91.28236 * 8 5 3 36 36 H 1.08997 * 110.41566 * 347.13050 * 9 7 6 37 37 H 1.09003 * 110.41663 * 109.58816 * 9 7 6 38 38 H 1.09001 * 110.39708 * 142.47689 * 10 9 7 39 39 H 1.09004 * 110.39819 * 264.88331 * 10 9 7 40 40 H 1.08997 * 109.47166 * 50.12247 * 12 11 10 41 41 H 1.08998 * 109.47277 * 170.13207 * 12 11 10 42 42 H 0.97003 * 120.00345 * 359.97438 * 15 13 12 43 43 H 0.96996 * 120.00144 * 179.97438 * 19 18 16 44 44 H 1.08991 * 110.47220 * 279.67577 * 24 11 10 45 45 H 1.08998 * 110.46888 * 157.06541 * 24 11 10 46 46 H 1.08002 * 124.44506 * 315.22319 * 25 2 1 47 47 H 1.07991 * 124.44863 * 179.73328 * 26 25 2 48 48 H 1.08996 * 110.52393 * 225.02179 * 27 26 25 49 49 H 1.08993 * 110.29475 * 102.72697 * 27 26 25 50 50 H 1.09002 * 111.03487 * 334.58456 * 28 2 1 51 51 H 1.09000 * 111.03782 * 98.48492 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0561 1.4122 0.0000 4 8 2.7466 1.8021 -0.9177 5 7 1.7594 2.2419 1.0199 6 6 0.9776 2.1507 2.2648 7 6 1.8737 3.2474 2.8314 8 6 2.0695 3.6380 1.3725 9 6 3.1240 2.7874 3.5866 10 6 3.1062 3.6024 4.9013 11 7 1.6795 3.9721 5.0954 12 6 1.5535 5.1384 5.9797 13 6 1.9312 4.7465 7.3850 14 8 2.2722 3.6077 7.6260 15 7 1.8910 5.6614 8.3736 16 6 2.2351 5.3050 9.6520 17 1 2.5379 4.2909 9.8669 18 6 2.1931 6.2483 10.6714 19 7 2.5224 5.9065 11.8968 20 14 1.6686 8.0023 10.3000 21 1 0.1977 8.1243 10.4639 22 1 2.3498 8.9315 11.2368 23 1 2.0412 8.3453 8.9040 24 6 1.1876 4.2855 3.7259 25 6 2.0563 -0.7578 1.1966 26 6 3.0341 -1.5528 0.8565 27 6 3.3166 -1.4646 -0.6253 28 6 2.0686 -0.7755 -1.2245 29 1 -0.3633 0.4999 0.8979 30 1 -0.3633 0.5277 -0.8819 31 1 -0.3633 -1.0276 -0.0161 32 1 -0.0624 2.4555 2.1488 33 1 1.0832 1.1936 2.7756 34 1 3.0920 3.9302 1.1337 35 1 1.3308 4.3527 1.0097 36 1 3.0681 1.7201 3.8000 37 1 4.0212 3.0145 3.0106 38 1 3.4566 2.9904 5.7324 39 1 3.7205 4.4974 4.8019 40 1 2.2168 5.9307 5.6328 41 1 0.5235 5.4949 5.9664 42 1 1.6193 6.5724 8.1807 43 1 2.4935 6.5650 12.6084 44 1 1.4836 5.2936 3.4360 45 1 0.1044 4.1758 3.6755 46 1 1.6765 -0.6521 2.2021 47 1 3.5695 -2.1913 1.5435 48 1 3.4413 -2.4605 -1.0505 49 1 4.2065 -0.8616 -0.8053 50 1 1.3436 -1.5119 -1.5712 51 1 2.3457 -0.0937 -2.0286 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001148052265.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:02 Heat of formation + Delta-G solvation = -19.690640 kcal Electronic energy + Delta-G solvation = -30909.728669 eV Core-core repulsion = 26810.028039 eV Total energy + Delta-G solvation = -4099.700630 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.28408 -40.89737 -40.11915 -38.42890 -37.57336 -35.90125 -33.74582 -33.10436 -32.20936 -30.49217 -29.82393 -28.80772 -27.15129 -26.88662 -25.88766 -25.18692 -22.70741 -22.38649 -21.22687 -20.63792 -20.29080 -19.66136 -19.44505 -17.85112 -17.64983 -17.43512 -17.00580 -16.60858 -16.37220 -16.25214 -16.14611 -15.85502 -15.28712 -15.04603 -14.81622 -14.72477 -14.51004 -14.18102 -14.15820 -13.96904 -13.65838 -13.40741 -13.31761 -12.98342 -12.95480 -12.85174 -12.79098 -12.54199 -12.39244 -12.36039 -12.23444 -12.16393 -12.07396 -11.97682 -11.90276 -11.72575 -11.46131 -11.26864 -10.99441 -10.35325 -10.21213 -9.90333 -9.71716 -9.31577 -8.38867 -5.99316 1.14108 1.31405 1.37413 1.45893 1.60049 1.85627 2.00837 2.24936 2.67372 3.11059 3.17728 3.38996 3.41915 3.46325 3.57495 3.68518 3.77503 3.97085 4.04533 4.20581 4.21210 4.26085 4.37004 4.42090 4.45440 4.51825 4.52688 4.54395 4.61788 4.64886 4.70976 4.73909 4.77815 4.84571 4.86650 4.90158 4.95674 4.97166 5.00396 5.09376 5.16560 5.18185 5.23287 5.32501 5.50485 5.55398 5.87023 5.89497 5.94370 6.06989 6.62938 6.68937 6.92107 7.08369 7.43811 8.01972 8.78885 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.025879 B = 0.002000 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.695057 B =13997.280395 C =14464.049036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.053 4.053 3 C 0.553 3.447 4 O -0.588 6.588 5 N -0.642 5.642 6 C 0.119 3.881 7 C -0.090 4.090 8 C 0.115 3.885 9 C -0.086 4.086 10 C 0.039 3.961 11 N -0.507 5.507 12 C 0.043 3.957 13 C 0.452 3.548 14 O -0.607 6.607 15 N -0.594 5.594 16 C -0.325 4.325 17 H 0.054 0.946 18 C -0.018 4.018 19 N -0.937 5.937 20 Si 0.965 3.035 21 H -0.256 1.256 22 H -0.278 1.278 23 H -0.231 1.231 24 C 0.053 3.947 25 C -0.168 4.168 26 C -0.152 4.152 27 C -0.106 4.106 28 C -0.109 4.109 29 H 0.071 0.929 30 H 0.058 0.942 31 H 0.083 0.917 32 H 0.117 0.883 33 H 0.086 0.914 34 H 0.068 0.932 35 H 0.111 0.889 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.056 0.944 39 H 0.042 0.958 40 H 0.079 0.921 41 H 0.126 0.874 42 H 0.389 0.611 43 H 0.278 0.722 44 H 0.071 0.929 45 H 0.110 0.890 46 H 0.138 0.862 47 H 0.141 0.859 48 H 0.091 0.909 49 H 0.060 0.940 50 H 0.098 0.902 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.844 -5.673 -27.907 29.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.056 4.056 3 C 0.344 3.656 4 O -0.468 6.468 5 N -0.375 5.375 6 C -0.002 4.002 7 C -0.091 4.091 8 C -0.007 4.007 9 C -0.124 4.124 10 C -0.090 4.090 11 N -0.231 5.231 12 C -0.088 4.088 13 C 0.239 3.761 14 O -0.491 6.491 15 N -0.237 5.237 16 C -0.454 4.454 17 H 0.072 0.928 18 C -0.217 4.217 19 N -0.578 5.578 20 Si 0.785 3.215 21 H -0.181 1.181 22 H -0.203 1.203 23 H -0.154 1.154 24 C -0.075 4.075 25 C -0.186 4.186 26 C -0.170 4.170 27 C -0.143 4.143 28 C -0.147 4.147 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.102 0.898 32 H 0.135 0.865 33 H 0.104 0.896 34 H 0.086 0.914 35 H 0.129 0.871 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.074 0.926 39 H 0.060 0.940 40 H 0.097 0.903 41 H 0.144 0.856 42 H 0.225 0.775 43 H 0.087 0.913 44 H 0.090 0.910 45 H 0.128 0.872 46 H 0.156 0.844 47 H 0.159 0.841 48 H 0.109 0.891 49 H 0.079 0.921 50 H 0.116 0.884 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.482 -6.758 -27.948 29.475 hybrid contribution 0.808 1.493 0.518 1.774 sum -5.675 -5.265 -27.431 28.502 Atomic orbital electron populations 1.21807 0.90297 1.03997 1.02831 1.20625 0.98501 0.90066 0.96393 1.20405 0.79018 0.87098 0.79035 1.90648 1.41315 1.78120 1.36763 1.49686 1.51765 1.13937 1.22118 1.23291 0.96682 0.99721 0.80553 1.21965 0.96592 0.97180 0.93388 1.23060 1.02458 0.84218 0.90991 1.21858 0.96633 1.00077 0.93855 1.23105 0.89398 0.98822 0.97627 1.65128 1.16378 1.32382 1.09210 1.22032 1.04530 0.93048 0.89195 1.20943 0.81930 0.85370 0.87814 1.90538 1.52150 1.21938 1.84454 1.42046 1.62522 1.11728 1.07379 1.18978 1.44146 0.97899 0.84368 0.92779 1.26130 0.96943 1.04420 0.94163 1.69809 1.48824 1.37446 1.01682 0.85356 0.79522 0.76341 0.80233 1.18053 1.20313 1.15390 1.22986 1.01411 0.97346 0.85730 1.23159 0.99293 0.98079 0.98027 1.23610 0.97115 0.98911 0.97396 1.21423 0.98075 1.01523 0.93236 1.22516 0.97560 0.98731 0.95904 0.91054 0.92255 0.89815 0.86544 0.89611 0.91377 0.87103 0.91174 0.90869 0.92572 0.93959 0.90280 0.85622 0.77543 0.91257 0.91049 0.87208 0.84396 0.84114 0.89052 0.92119 0.88401 0.91189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.57 8.39 71.98 0.60 -0.97 16 2 C -0.05 -0.89 0.64 -52.99 -0.03 -0.92 16 3 C 0.55 12.52 6.79 87.66 0.60 13.12 16 4 O -0.59 -18.09 16.22 -3.03 -0.05 -18.14 16 5 N -0.64 -11.58 3.61 -858.13 -3.09 -14.68 16 6 C 0.12 1.60 5.86 83.62 0.49 2.09 16 7 C -0.09 -1.42 1.29 -52.44 -0.07 -1.49 16 8 C 0.12 1.78 7.92 83.54 0.66 2.45 16 9 C -0.09 -1.85 6.53 31.22 0.20 -1.64 16 10 C 0.04 1.09 5.83 86.54 0.50 1.59 16 11 N -0.51 -13.48 5.06 -886.62 -4.49 -17.96 16 12 C 0.04 1.22 5.30 85.56 0.45 1.67 16 13 C 0.45 19.70 7.59 87.66 0.66 20.37 16 14 O -0.61 -32.82 14.43 -3.08 -0.04 -32.86 16 15 N -0.59 -27.36 5.09 -306.99 -1.56 -28.93 16 16 C -0.32 -18.81 10.16 84.04 0.85 -17.95 16 17 H 0.05 3.75 7.39 -2.91 -0.02 3.73 16 18 C -0.02 -1.01 5.50 84.93 0.47 -0.54 16 19 N -0.94 -56.32 13.96 21.66 0.30 -56.02 16 20 Si 0.97 38.20 27.74 68.60 1.90 40.10 16 21 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 22 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 23 H -0.23 -7.59 6.52 99.48 0.65 -6.94 16 24 C 0.05 0.84 5.95 86.01 0.51 1.35 16 25 C -0.17 -2.65 8.74 26.26 0.23 -2.42 16 26 C -0.15 -2.39 10.78 26.26 0.28 -2.11 16 27 C -0.11 -1.70 6.81 30.53 0.21 -1.49 16 28 C -0.11 -1.82 6.05 31.71 0.19 -1.62 16 29 H 0.07 0.73 6.53 -2.38 -0.02 0.71 16 30 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.08 0.78 8.13 -2.39 -0.02 0.76 16 32 H 0.12 1.00 7.97 -2.39 -0.02 0.98 16 33 H 0.09 1.19 6.35 -2.39 -0.02 1.17 16 34 H 0.07 1.23 7.93 -2.39 -0.02 1.21 16 35 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.07 1.59 7.85 -2.39 -0.02 1.57 16 37 H 0.07 1.52 7.83 -2.39 -0.02 1.50 16 38 H 0.06 2.09 6.93 -2.39 -0.02 2.08 16 39 H 0.04 1.14 7.81 -2.39 -0.02 1.12 16 40 H 0.08 1.84 7.88 -2.39 -0.02 1.82 16 41 H 0.13 2.74 8.13 -2.39 -0.02 2.72 16 42 H 0.39 14.68 5.76 -92.71 -0.53 14.14 16 43 H 0.28 15.29 8.31 -92.71 -0.77 14.52 16 44 H 0.07 0.90 7.98 -2.39 -0.02 0.88 16 45 H 0.11 1.31 7.86 -2.39 -0.02 1.29 16 46 H 0.14 1.93 6.82 -2.91 -0.02 1.91 16 47 H 0.14 1.81 8.06 -2.92 -0.02 1.79 16 48 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 49 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 50 H 0.10 1.19 7.90 -2.39 -0.02 1.17 16 51 H 0.07 1.46 6.91 -2.39 -0.02 1.44 16 Total: -1.00 -82.57 399.83 0.13 -82.44 By element: Atomic # 1 Polarization: 34.25 SS G_CDS: 0.34 Total: 34.59 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: 6.82 Total: 11.47 kcal Atomic # 7 Polarization: -108.75 SS G_CDS: -8.84 Total: -117.59 kcal Atomic # 8 Polarization: -50.91 SS G_CDS: -0.09 Total: -51.01 kcal Atomic # 14 Polarization: 38.20 SS G_CDS: 1.90 Total: 40.10 kcal Total: -82.57 0.13 -82.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148052265.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.745 kcal (2) G-P(sol) polarization free energy of solvation -82.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds