Wall clock time and date at job start Wed Apr 1 2020 05:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.51411 * 136.31489 * 2 1 4 4 C 1.53676 * 87.49135 * 205.96739 * 3 2 1 5 5 C 1.53000 * 113.82590 * 220.18876 * 4 3 2 6 6 C 1.50693 * 113.82833 * 88.60778 * 4 3 2 7 7 O 1.21290 * 120.00002 * 359.97438 * 6 4 3 8 8 N 1.34778 * 120.00543 * 180.02562 * 6 4 3 9 9 C 1.47291 * 135.91223 * 359.62842 * 8 6 4 10 10 C 1.52588 * 87.56153 * 153.96153 * 9 8 6 11 11 C 1.47284 * 135.92127 * 180.02562 * 8 6 4 12 12 C 1.53480 * 115.96962 * 141.91564 * 10 9 8 13 13 C 1.55208 * 102.57513 * 110.36415 * 12 10 9 14 14 N 1.48632 * 103.40542 * 36.43164 * 13 12 10 15 15 C 1.46903 * 111.00021 * 200.90518 * 14 13 12 16 16 C 1.50703 * 109.46766 * 287.48447 * 15 14 13 17 17 O 1.21290 * 120.00137 * 359.97438 * 16 15 14 18 18 N 1.34776 * 119.99739 * 180.02562 * 16 15 14 19 19 C 1.37101 * 119.99543 * 179.97438 * 18 16 15 20 20 H 1.07992 * 120.00649 * 359.97438 * 19 18 16 21 21 C 1.38950 * 119.99498 * 179.97438 * 19 18 16 22 22 N 1.31414 * 120.00436 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99820 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46988 * 90.00335 * 23 21 19 25 25 H 1.48498 * 109.47495 * 210.00094 * 23 21 19 26 26 H 1.48495 * 109.47182 * 330.00327 * 23 21 19 27 27 C 1.48233 * 105.89060 * 321.45934 * 14 13 12 28 28 C 1.51400 * 136.31783 * 179.97438 * 2 1 3 29 29 H 1.08005 * 119.99936 * 0.02562 * 1 2 3 30 30 H 1.07994 * 119.99903 * 179.97438 * 1 2 3 31 31 H 1.09002 * 113.56223 * 320.63755 * 3 2 1 32 32 H 1.09001 * 113.56107 * 91.29667 * 3 2 1 33 33 H 1.09001 * 109.47313 * 59.99689 * 5 4 3 34 34 H 1.08996 * 109.47330 * 179.97438 * 5 4 3 35 35 H 1.09000 * 109.47190 * 300.00032 * 5 4 3 36 36 H 1.09003 * 113.51640 * 268.61036 * 9 8 6 37 37 H 1.09004 * 113.51625 * 39.20847 * 9 8 6 38 38 H 1.09007 * 113.52042 * 320.79327 * 11 8 6 39 39 H 1.09007 * 113.51899 * 91.39222 * 11 8 6 40 40 H 1.09000 * 110.78806 * 228.63548 * 12 10 9 41 41 H 1.09000 * 110.78465 * 352.09631 * 12 10 9 42 42 H 1.09003 * 110.63339 * 277.94529 * 13 12 10 43 43 H 1.09003 * 110.76781 * 154.97287 * 13 12 10 44 44 H 1.08997 * 109.46946 * 47.47853 * 15 14 13 45 45 H 1.08996 * 109.47482 * 167.48376 * 15 14 13 46 46 H 0.96995 * 120.00589 * 359.97438 * 18 16 15 47 47 H 0.97002 * 120.00418 * 179.97438 * 22 21 19 48 48 H 1.09001 * 110.04013 * 265.82334 * 27 14 13 49 49 H 1.08996 * 110.04385 * 144.37288 * 27 14 13 50 50 H 1.09007 * 113.56397 * 268.62858 * 28 2 1 51 51 H 1.09000 * 113.56217 * 39.29117 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.4049 1.0458 0.0000 4 6 3.3096 0.0012 -0.6722 5 6 4.7481 0.0024 -0.1511 6 6 3.2261 0.0015 -2.1769 7 8 2.4905 0.7820 -2.7432 8 7 3.9681 -0.8661 -2.8933 9 6 4.9468 -1.9239 -2.5889 10 6 4.5528 -2.5782 -3.9099 11 6 4.1597 -1.1657 -4.3225 12 6 5.6947 -3.2223 -4.7078 13 6 5.3818 -4.7373 -4.5824 14 7 3.8970 -4.7875 -4.6274 15 6 3.3945 -6.0369 -4.0405 16 6 3.6803 -7.1824 -4.9772 17 8 4.2464 -6.9779 -6.0302 18 7 3.3058 -8.4338 -4.6453 19 6 3.5653 -9.4757 -5.4978 20 1 4.0694 -9.2937 -6.4353 21 6 3.1798 -10.7660 -5.1553 22 7 2.5668 -10.9876 -4.0142 23 14 3.5327 -12.1856 -6.3170 24 1 4.8626 -12.7655 -6.0002 25 1 2.4873 -13.2280 -6.1568 26 1 3.5289 -11.6919 -7.7175 27 6 3.4277 -3.6119 -3.8560 28 6 2.4049 -1.0457 0.0005 29 1 -0.5400 0.9354 -0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 2.1864 1.9054 -0.6337 32 1 2.7356 1.3304 0.9989 33 1 4.7475 -0.2105 0.9179 34 1 5.3243 -0.7616 -0.6730 35 1 5.1973 0.9799 -0.3266 36 1 5.9776 -1.5701 -2.5692 37 1 4.6868 -2.5180 -1.7127 38 1 3.2383 -1.1227 -4.9033 39 1 4.9742 -0.6035 -4.7795 40 1 5.6645 -2.9060 -5.7505 41 1 6.6601 -2.9882 -4.2591 42 1 5.7510 -5.1286 -3.6344 43 1 5.8103 -5.2909 -5.4180 44 1 3.8904 -6.2154 -3.0865 45 1 2.3191 -5.9570 -3.8817 46 1 2.8527 -8.5973 -3.8034 47 1 2.2973 -11.8883 -3.7753 48 1 3.2319 -3.8973 -2.8224 49 1 2.5240 -3.2044 -4.3090 50 1 2.7365 -1.3289 0.9995 51 1 2.1859 -1.9061 -0.6319 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001148263005.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:10 Heat of formation + Delta-G solvation = 28.231079 kcal Electronic energy + Delta-G solvation = -30864.967918 eV Core-core repulsion = 26767.345329 eV Total energy + Delta-G solvation = -4097.622589 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.54488 -40.18862 -38.41512 -37.48103 -36.37346 -33.87897 -32.45630 -31.58309 -31.09427 -29.20844 -28.01112 -27.65032 -26.51064 -26.13233 -25.49810 -24.07867 -22.52125 -21.37795 -19.43360 -19.16479 -18.87966 -18.25177 -17.85695 -16.78519 -16.58312 -16.17822 -15.83314 -15.34065 -15.09500 -14.92470 -14.68184 -14.54663 -14.47810 -13.98547 -13.94035 -13.73475 -13.59503 -13.38164 -13.13799 -12.88197 -12.77769 -12.58074 -12.42265 -12.20238 -11.86957 -11.74595 -11.48521 -11.36510 -11.22742 -11.19269 -11.14648 -11.00412 -10.85927 -10.49365 -10.42117 -10.39148 -10.21530 -9.94138 -9.48829 -9.35853 -8.97016 -8.49082 -8.00210 -7.93479 -6.41240 -3.81942 1.99434 2.33689 2.51337 3.17767 3.26471 3.32439 3.83878 3.91381 3.93739 3.95042 4.12232 4.17818 4.21711 4.28905 4.34053 4.67825 4.73477 4.82801 4.95961 5.05079 5.07979 5.08415 5.22426 5.24075 5.24424 5.27519 5.31684 5.35326 5.41038 5.41952 5.50577 5.54270 5.57539 5.61932 5.62768 5.73618 5.77898 5.82836 5.85822 5.88302 5.97122 6.11359 6.19199 6.27891 6.37582 6.65542 7.11608 7.19627 7.46115 7.55619 7.92852 8.06888 8.62654 9.18958 9.55363 10.07381 10.76654 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017015 B = 0.002125 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.178279 B =13170.397738 C =14113.316874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.152 4.152 3 C -0.084 4.084 4 C -0.103 4.103 5 C -0.137 4.137 6 C 0.568 3.432 7 O -0.534 6.534 8 N -0.642 5.642 9 C 0.111 3.889 10 C -0.105 4.105 11 C 0.120 3.880 12 C -0.105 4.105 13 C 0.042 3.958 14 N -0.490 5.490 15 C 0.037 3.963 16 C 0.446 3.554 17 O -0.576 6.576 18 N -0.566 5.566 19 C -0.297 4.297 20 H 0.103 0.897 21 C 0.021 3.979 22 N -0.903 5.903 23 Si 0.929 3.071 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.269 1.269 27 C 0.064 3.936 28 C -0.087 4.087 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.084 0.916 32 H 0.099 0.901 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.039 0.961 43 H 0.100 0.900 44 H 0.050 0.950 45 H 0.087 0.913 46 H 0.391 0.609 47 H 0.271 0.729 48 H 0.047 0.953 49 H 0.082 0.918 50 H 0.103 0.897 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.079 21.590 11.902 24.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.152 4.152 3 C -0.121 4.121 4 C -0.106 4.106 5 C -0.194 4.194 6 C 0.358 3.642 7 O -0.410 6.410 8 N -0.377 5.377 9 C -0.012 4.012 10 C -0.107 4.107 11 C -0.002 4.002 12 C -0.144 4.144 13 C -0.086 4.086 14 N -0.214 5.214 15 C -0.095 4.095 16 C 0.231 3.769 17 O -0.460 6.460 18 N -0.203 5.203 19 C -0.427 4.427 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.545 5.545 23 Si 0.756 3.244 24 H -0.205 1.205 25 H -0.210 1.210 26 H -0.194 1.194 27 C -0.064 4.064 28 C -0.124 4.124 29 H 0.124 0.876 30 H 0.124 0.876 31 H 0.103 0.897 32 H 0.117 0.883 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.108 0.892 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.106 0.894 40 H 0.103 0.897 41 H 0.094 0.906 42 H 0.058 0.942 43 H 0.118 0.882 44 H 0.068 0.932 45 H 0.105 0.895 46 H 0.224 0.776 47 H 0.081 0.919 48 H 0.065 0.935 49 H 0.100 0.900 50 H 0.121 0.879 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.650 22.134 10.553 24.791 hybrid contribution 0.088 -0.995 0.941 1.372 sum 3.738 21.139 11.494 24.350 Atomic orbital electron populations 1.22836 0.93376 1.02214 1.01504 1.22583 0.93920 0.97828 1.00837 1.22159 0.92706 0.96729 1.00501 1.21646 0.96757 1.00739 0.91503 1.21798 0.93314 1.02770 1.01531 1.19386 0.78831 0.78224 0.87787 1.90706 1.39349 1.38856 1.72125 1.49623 1.42279 1.36517 1.09298 1.23179 0.93186 0.86654 0.98149 1.22271 0.97800 0.94460 0.96135 1.22930 1.01781 0.92272 0.83238 1.22313 0.96046 0.95329 1.00713 1.23323 0.88246 0.95348 1.01687 1.64598 1.07649 1.00300 1.48857 1.22066 1.01056 0.90465 0.95915 1.19685 0.85165 0.83506 0.88518 1.90506 1.46062 1.83864 1.25565 1.41865 1.52391 1.05443 1.20646 1.19688 1.35708 0.85321 1.01958 0.87932 1.25254 0.96920 0.98797 0.97033 1.69611 1.40206 1.22654 1.22003 0.85867 0.77922 0.80216 0.80346 1.20454 1.20951 1.19408 1.22460 0.96699 0.90328 0.96874 1.22292 0.93205 0.96000 1.00938 0.87554 0.87586 0.89747 0.88322 0.91213 0.91617 0.91857 0.89165 0.90110 0.89878 0.89421 0.89744 0.90644 0.94238 0.88212 0.93235 0.89455 0.77555 0.91912 0.93500 0.89959 0.87917 0.90700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 14.71 29.02 0.43 -1.07 16 2 C -0.15 -1.46 6.82 -100.38 -0.68 -2.14 16 3 C -0.08 -0.74 6.89 -27.40 -0.19 -0.92 16 4 C -0.10 -0.91 1.24 -154.88 -0.19 -1.10 16 5 C -0.14 -0.86 9.15 37.16 0.34 -0.52 16 6 C 0.57 6.82 6.95 -10.99 -0.08 6.74 16 7 O -0.53 -8.52 16.60 5.55 0.09 -8.42 16 8 N -0.64 -6.52 3.63 -185.14 -0.67 -7.20 16 9 C 0.11 0.86 5.51 -7.64 -0.04 0.82 16 10 C -0.11 -1.01 1.23 -154.90 -0.19 -1.20 16 11 C 0.12 1.18 7.91 -7.78 -0.06 1.12 16 12 C -0.11 -1.05 6.49 -25.31 -0.16 -1.22 16 13 C 0.04 0.59 5.95 -1.70 -0.01 0.58 16 14 N -0.49 -7.74 4.92 -232.05 -1.14 -8.89 16 15 C 0.04 0.64 5.20 -4.97 -0.03 0.61 16 16 C 0.45 10.36 7.61 -10.98 -0.08 10.27 16 17 O -0.58 -15.31 14.64 5.55 0.08 -15.23 16 18 N -0.57 -14.21 5.29 -10.96 -0.06 -14.27 16 19 C -0.30 -8.22 9.68 -14.93 -0.14 -8.36 16 20 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 21 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 22 N -0.90 -24.46 13.05 55.50 0.72 -23.74 16 23 Si 0.93 20.95 29.55 -169.99 -5.02 15.93 16 24 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 27 C 0.06 0.79 6.23 -3.15 -0.02 0.77 16 28 C -0.09 -0.72 7.11 -27.31 -0.19 -0.92 16 29 H 0.11 0.88 8.06 -52.48 -0.42 0.46 16 30 H 0.11 0.89 8.06 -52.49 -0.42 0.46 16 31 H 0.08 0.88 7.46 -51.93 -0.39 0.50 16 32 H 0.10 0.64 8.10 -51.93 -0.42 0.22 16 33 H 0.07 0.34 7.93 -51.93 -0.41 -0.08 16 34 H 0.06 0.38 5.24 -51.93 -0.27 0.11 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.09 0.53 7.85 -51.93 -0.41 0.12 16 37 H 0.08 0.57 7.75 -51.93 -0.40 0.17 16 38 H 0.08 0.93 7.93 -51.93 -0.41 0.51 16 39 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.08 0.87 8.13 -51.93 -0.42 0.45 16 41 H 0.07 0.58 7.87 -51.93 -0.41 0.17 16 42 H 0.04 0.53 7.80 -51.93 -0.41 0.12 16 43 H 0.10 1.72 7.11 -51.93 -0.37 1.35 16 44 H 0.05 0.77 7.83 -51.93 -0.41 0.36 16 45 H 0.09 1.41 8.08 -51.93 -0.42 0.99 16 46 H 0.39 9.39 7.90 -40.82 -0.32 9.07 16 47 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 48 H 0.05 0.53 7.48 -51.93 -0.39 0.14 16 49 H 0.08 1.07 7.81 -51.93 -0.41 0.66 16 50 H 0.10 0.65 7.95 -51.93 -0.41 0.24 16 51 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 LS Contribution 409.37 15.07 6.17 6.17 Total: -1.00 -33.76 409.37 -9.53 -43.29 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -8.30 Total: 8.43 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: -1.41 Total: 3.91 kcal Atomic # 7 Polarization: -52.94 SS G_CDS: -1.15 Total: -54.09 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: 0.17 Total: -23.65 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.76 -9.53 -43.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148263005.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.525 kcal (2) G-P(sol) polarization free energy of solvation -33.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds