Wall clock time and date at job start Wed Apr 1 2020 05:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.51411 * 136.31489 * 2 1 4 4 C 1.53676 * 87.49135 * 205.96739 * 3 2 1 5 5 C 1.53000 * 113.82590 * 220.18876 * 4 3 2 6 6 C 1.50693 * 113.82833 * 88.60778 * 4 3 2 7 7 O 1.21290 * 120.00002 * 359.97438 * 6 4 3 8 8 N 1.34778 * 120.00543 * 180.02562 * 6 4 3 9 9 C 1.47291 * 135.91223 * 359.62842 * 8 6 4 10 10 C 1.52588 * 87.56153 * 153.96153 * 9 8 6 11 11 C 1.47284 * 135.92127 * 180.02562 * 8 6 4 12 12 C 1.53480 * 115.96962 * 141.91564 * 10 9 8 13 13 C 1.55208 * 102.57513 * 110.36415 * 12 10 9 14 14 N 1.48632 * 103.40542 * 36.43164 * 13 12 10 15 15 C 1.46903 * 111.00021 * 200.90518 * 14 13 12 16 16 C 1.50703 * 109.46766 * 287.48447 * 15 14 13 17 17 O 1.21290 * 120.00137 * 359.97438 * 16 15 14 18 18 N 1.34776 * 119.99739 * 180.02562 * 16 15 14 19 19 C 1.37101 * 119.99543 * 179.97438 * 18 16 15 20 20 H 1.07992 * 120.00649 * 359.97438 * 19 18 16 21 21 C 1.38950 * 119.99498 * 179.97438 * 19 18 16 22 22 N 1.31414 * 120.00436 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99820 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46988 * 90.00335 * 23 21 19 25 25 H 1.48498 * 109.47495 * 210.00094 * 23 21 19 26 26 H 1.48495 * 109.47182 * 330.00327 * 23 21 19 27 27 C 1.48233 * 105.89060 * 321.45934 * 14 13 12 28 28 C 1.51400 * 136.31783 * 179.97438 * 2 1 3 29 29 H 1.08005 * 119.99936 * 0.02562 * 1 2 3 30 30 H 1.07994 * 119.99903 * 179.97438 * 1 2 3 31 31 H 1.09002 * 113.56223 * 320.63755 * 3 2 1 32 32 H 1.09001 * 113.56107 * 91.29667 * 3 2 1 33 33 H 1.09001 * 109.47313 * 59.99689 * 5 4 3 34 34 H 1.08996 * 109.47330 * 179.97438 * 5 4 3 35 35 H 1.09000 * 109.47190 * 300.00032 * 5 4 3 36 36 H 1.09003 * 113.51640 * 268.61036 * 9 8 6 37 37 H 1.09004 * 113.51625 * 39.20847 * 9 8 6 38 38 H 1.09007 * 113.52042 * 320.79327 * 11 8 6 39 39 H 1.09007 * 113.51899 * 91.39222 * 11 8 6 40 40 H 1.09000 * 110.78806 * 228.63548 * 12 10 9 41 41 H 1.09000 * 110.78465 * 352.09631 * 12 10 9 42 42 H 1.09003 * 110.63339 * 277.94529 * 13 12 10 43 43 H 1.09003 * 110.76781 * 154.97287 * 13 12 10 44 44 H 1.08997 * 109.46946 * 47.47853 * 15 14 13 45 45 H 1.08996 * 109.47482 * 167.48376 * 15 14 13 46 46 H 0.96995 * 120.00589 * 359.97438 * 18 16 15 47 47 H 0.97002 * 120.00418 * 179.97438 * 22 21 19 48 48 H 1.09001 * 110.04013 * 265.82334 * 27 14 13 49 49 H 1.08996 * 110.04385 * 144.37288 * 27 14 13 50 50 H 1.09007 * 113.56397 * 268.62858 * 28 2 1 51 51 H 1.09000 * 113.56217 * 39.29117 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.4049 1.0458 0.0000 4 6 3.3096 0.0012 -0.6722 5 6 4.7481 0.0024 -0.1511 6 6 3.2261 0.0015 -2.1769 7 8 2.4905 0.7820 -2.7432 8 7 3.9681 -0.8661 -2.8933 9 6 4.9468 -1.9239 -2.5889 10 6 4.5528 -2.5782 -3.9099 11 6 4.1597 -1.1657 -4.3225 12 6 5.6947 -3.2223 -4.7078 13 6 5.3818 -4.7373 -4.5824 14 7 3.8970 -4.7875 -4.6274 15 6 3.3945 -6.0369 -4.0405 16 6 3.6803 -7.1824 -4.9772 17 8 4.2464 -6.9779 -6.0302 18 7 3.3058 -8.4338 -4.6453 19 6 3.5653 -9.4757 -5.4978 20 1 4.0694 -9.2937 -6.4353 21 6 3.1798 -10.7660 -5.1553 22 7 2.5668 -10.9876 -4.0142 23 14 3.5327 -12.1856 -6.3170 24 1 4.8626 -12.7655 -6.0002 25 1 2.4873 -13.2280 -6.1568 26 1 3.5289 -11.6919 -7.7175 27 6 3.4277 -3.6119 -3.8560 28 6 2.4049 -1.0457 0.0005 29 1 -0.5400 0.9354 -0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 2.1864 1.9054 -0.6337 32 1 2.7356 1.3304 0.9989 33 1 4.7475 -0.2105 0.9179 34 1 5.3243 -0.7616 -0.6730 35 1 5.1973 0.9799 -0.3266 36 1 5.9776 -1.5701 -2.5692 37 1 4.6868 -2.5180 -1.7127 38 1 3.2383 -1.1227 -4.9033 39 1 4.9742 -0.6035 -4.7795 40 1 5.6645 -2.9060 -5.7505 41 1 6.6601 -2.9882 -4.2591 42 1 5.7510 -5.1286 -3.6344 43 1 5.8103 -5.2909 -5.4180 44 1 3.8904 -6.2154 -3.0865 45 1 2.3191 -5.9570 -3.8817 46 1 2.8527 -8.5973 -3.8034 47 1 2.2973 -11.8883 -3.7753 48 1 3.2319 -3.8973 -2.8224 49 1 2.5240 -3.2044 -4.3090 50 1 2.7365 -1.3289 0.9995 51 1 2.1859 -1.9061 -0.6319 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001148263005.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:09 Heat of formation + Delta-G solvation = 4.654792 kcal Electronic energy + Delta-G solvation = -30865.990262 eV Core-core repulsion = 26767.345329 eV Total energy + Delta-G solvation = -4098.644933 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.34636 -41.02767 -40.04864 -38.48681 -37.53715 -35.87275 -33.39468 -33.12740 -32.36976 -30.13646 -28.97985 -28.55526 -27.19497 -27.00409 -26.71963 -25.55191 -23.31541 -22.52685 -20.99336 -20.14747 -19.86707 -19.68030 -18.94450 -17.87018 -17.58699 -17.22416 -16.83885 -16.68627 -16.31658 -16.11191 -15.88616 -15.60327 -15.54564 -15.35866 -14.92575 -14.84721 -14.55406 -14.19754 -14.05930 -13.89540 -13.79791 -13.57770 -13.43458 -13.20046 -13.10232 -12.94619 -12.83232 -12.71305 -12.40535 -12.35360 -12.15239 -12.11398 -11.96663 -11.82075 -11.74578 -11.46540 -11.25211 -11.11497 -10.80471 -10.29496 -10.05391 -9.99075 -9.78017 -9.26157 -8.45242 -5.93592 1.30351 1.38473 1.42154 1.50299 1.54775 1.74669 2.07922 2.29244 2.79432 3.11884 3.21532 3.30851 3.35510 3.41646 3.52845 3.56610 3.61266 3.80861 3.99359 4.14961 4.29052 4.33077 4.36246 4.39033 4.42275 4.51087 4.53061 4.59203 4.60421 4.67081 4.68073 4.71766 4.74085 4.79514 4.85849 4.86898 4.92102 4.96169 5.06989 5.11414 5.12674 5.19473 5.24402 5.33225 5.42311 5.50864 5.88934 5.97050 6.00845 6.11096 6.62716 6.67619 7.07338 7.15005 7.58796 8.14943 8.72321 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017015 B = 0.002125 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.178279 B =13170.397738 C =14113.316874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.172 4.172 3 C -0.083 4.083 4 C -0.100 4.100 5 C -0.133 4.133 6 C 0.559 3.441 7 O -0.588 6.588 8 N -0.643 5.643 9 C 0.121 3.879 10 C -0.098 4.098 11 C 0.115 3.885 12 C -0.091 4.091 13 C 0.038 3.962 14 N -0.518 5.518 15 C 0.050 3.950 16 C 0.444 3.556 17 O -0.615 6.615 18 N -0.577 5.577 19 C -0.330 4.330 20 H 0.078 0.922 21 C -0.014 4.014 22 N -0.922 5.922 23 Si 0.991 3.009 24 H -0.269 1.269 25 H -0.272 1.272 26 H -0.274 1.274 27 C 0.067 3.933 28 C -0.079 4.079 29 H 0.108 0.892 30 H 0.110 0.890 31 H 0.059 0.941 32 H 0.126 0.874 33 H 0.091 0.909 34 H 0.074 0.926 35 H 0.062 0.938 36 H 0.123 0.877 37 H 0.096 0.904 38 H 0.061 0.939 39 H 0.109 0.891 40 H 0.078 0.922 41 H 0.111 0.889 42 H 0.051 0.949 43 H 0.059 0.941 44 H 0.075 0.925 45 H 0.101 0.899 46 H 0.395 0.605 47 H 0.277 0.723 48 H 0.062 0.938 49 H 0.067 0.933 50 H 0.130 0.870 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.765 21.789 14.061 26.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.172 4.172 3 C -0.120 4.120 4 C -0.103 4.103 5 C -0.190 4.190 6 C 0.350 3.650 7 O -0.468 6.468 8 N -0.377 5.377 9 C -0.001 4.001 10 C -0.099 4.099 11 C -0.008 4.008 12 C -0.129 4.129 13 C -0.089 4.089 14 N -0.243 5.243 15 C -0.081 4.081 16 C 0.231 3.769 17 O -0.500 6.500 18 N -0.214 5.214 19 C -0.460 4.460 20 H 0.096 0.904 21 C -0.213 4.213 22 N -0.563 5.563 23 Si 0.815 3.185 24 H -0.195 1.195 25 H -0.197 1.197 26 H -0.199 1.199 27 C -0.060 4.060 28 C -0.116 4.116 29 H 0.126 0.874 30 H 0.128 0.872 31 H 0.078 0.922 32 H 0.143 0.857 33 H 0.110 0.890 34 H 0.093 0.907 35 H 0.081 0.919 36 H 0.141 0.859 37 H 0.114 0.886 38 H 0.079 0.921 39 H 0.127 0.873 40 H 0.096 0.904 41 H 0.129 0.871 42 H 0.069 0.931 43 H 0.078 0.922 44 H 0.093 0.907 45 H 0.119 0.881 46 H 0.229 0.771 47 H 0.086 0.914 48 H 0.080 0.920 49 H 0.086 0.914 50 H 0.148 0.852 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.354 22.320 12.738 26.251 hybrid contribution -0.468 -1.022 0.198 1.141 sum 4.886 21.298 12.936 25.393 Atomic orbital electron populations 1.22987 0.93753 1.02600 1.01927 1.22951 0.94457 0.99197 1.00607 1.22241 0.92672 0.95717 1.01398 1.21624 0.98683 1.00783 0.89228 1.21823 0.91113 1.03164 1.02852 1.20033 0.78127 0.77649 0.89213 1.90678 1.41600 1.41152 1.73359 1.49707 1.42219 1.36294 1.09447 1.23372 0.94125 0.85327 0.97245 1.22090 0.96645 0.93417 0.97780 1.23034 1.01558 0.92804 0.83358 1.22250 0.97745 0.91978 1.00923 1.23277 0.87139 0.97924 1.00566 1.64475 1.08933 1.00535 1.50331 1.21899 1.02240 0.88961 0.95049 1.20748 0.83237 0.84220 0.88715 1.90480 1.47342 1.84596 1.27606 1.41940 1.53059 1.05845 1.20604 1.19636 1.37299 0.86934 1.02088 0.90380 1.26017 0.96246 1.00566 0.98516 1.69671 1.40214 1.23523 1.22903 0.84950 0.78329 0.77219 0.77986 1.19482 1.19664 1.19909 1.22417 0.97112 0.89553 0.96920 1.22345 0.92207 0.94979 1.02031 0.87417 0.87167 0.92198 0.85657 0.89049 0.90712 0.91873 0.85883 0.88566 0.92075 0.87328 0.90379 0.87084 0.93063 0.92234 0.90726 0.88131 0.77093 0.91360 0.92017 0.91423 0.85178 0.91664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.24 14.71 67.78 1.00 -2.25 16 2 C -0.17 -3.16 6.82 -16.04 -0.11 -3.27 16 3 C -0.08 -1.36 6.89 30.16 0.21 -1.15 16 4 C -0.10 -1.54 1.24 -52.42 -0.07 -1.61 16 5 C -0.13 -1.13 9.15 71.98 0.66 -0.48 16 6 C 0.56 12.83 6.95 87.65 0.61 13.44 16 7 O -0.59 -19.19 16.60 -3.06 -0.05 -19.24 16 8 N -0.64 -11.68 3.63 -858.03 -3.12 -14.80 16 9 C 0.12 1.36 5.51 83.62 0.46 1.82 16 10 C -0.10 -1.63 1.23 -52.42 -0.06 -1.69 16 11 C 0.11 2.08 7.91 83.53 0.66 2.74 16 12 C -0.09 -1.58 6.49 31.51 0.20 -1.37 16 13 C 0.04 1.05 5.95 86.73 0.52 1.56 16 14 N -0.52 -16.04 4.92 -888.08 -4.37 -20.41 16 15 C 0.05 1.70 5.20 85.56 0.45 2.15 16 16 C 0.44 20.98 7.61 87.66 0.67 21.65 16 17 O -0.61 -33.82 14.64 -3.06 -0.04 -33.86 16 18 N -0.58 -29.50 5.29 -306.99 -1.62 -31.13 16 19 C -0.33 -18.71 9.68 84.04 0.81 -17.89 16 20 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 21 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 22 N -0.92 -49.66 13.05 21.66 0.28 -49.38 16 23 Si 0.99 42.89 29.55 68.60 2.03 44.92 16 24 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 25 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 26 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 27 C 0.07 1.54 6.23 86.01 0.54 2.08 16 28 C -0.08 -1.11 7.11 30.22 0.21 -0.90 16 29 H 0.11 1.84 8.06 -2.91 -0.02 1.82 16 30 H 0.11 1.84 8.06 -2.91 -0.02 1.82 16 31 H 0.06 1.28 7.46 -2.39 -0.02 1.26 16 32 H 0.13 1.31 8.10 -2.39 -0.02 1.29 16 33 H 0.09 0.42 7.93 -2.39 -0.02 0.41 16 34 H 0.07 0.50 5.24 -2.39 -0.01 0.49 16 35 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.12 0.71 7.85 -2.39 -0.02 0.69 16 37 H 0.10 0.87 7.75 -2.38 -0.02 0.86 16 38 H 0.06 1.38 7.93 -2.38 -0.02 1.36 16 39 H 0.11 1.53 8.14 -2.38 -0.02 1.51 16 40 H 0.08 1.48 8.13 -2.39 -0.02 1.46 16 41 H 0.11 1.19 7.87 -2.39 -0.02 1.17 16 42 H 0.05 1.26 7.80 -2.39 -0.02 1.24 16 43 H 0.06 2.10 7.11 -2.39 -0.02 2.09 16 44 H 0.07 2.17 7.83 -2.39 -0.02 2.15 16 45 H 0.10 3.14 8.08 -2.39 -0.02 3.12 16 46 H 0.40 19.19 7.90 -92.71 -0.73 18.46 16 47 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 48 H 0.06 1.24 7.48 -2.39 -0.02 1.22 16 49 H 0.07 1.74 7.81 -2.39 -0.02 1.72 16 50 H 0.13 1.12 7.95 -2.38 -0.02 1.10 16 51 H 0.06 1.06 8.10 -2.39 -0.02 1.04 16 Total: -1.00 -77.42 409.37 0.52 -76.90 By element: Atomic # 1 Polarization: 32.26 SS G_CDS: 0.20 Total: 32.46 kcal Atomic # 6 Polarization: 7.32 SS G_CDS: 7.22 Total: 14.53 kcal Atomic # 7 Polarization: -106.88 SS G_CDS: -8.83 Total: -115.71 kcal Atomic # 8 Polarization: -53.00 SS G_CDS: -0.10 Total: -53.10 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -77.42 0.52 -76.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148263005.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.550 kcal (2) G-P(sol) polarization free energy of solvation -77.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds