Wall clock time and date at job start Wed Apr 1 2020 04:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31580 * 1 3 3 Si 1.86806 * 119.99689 * 2 1 4 4 H 1.48497 * 109.46964 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47266 * 299.99931 * 3 2 1 6 6 H 1.48500 * 109.46992 * 59.99895 * 3 2 1 7 7 C 1.38623 * 120.00134 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00069 * 179.97438 * 7 2 1 9 9 O 1.34804 * 120.00161 * 0.02562 * 7 2 1 10 10 C 1.35818 * 117.00090 * 185.07885 * 9 7 2 11 11 C 1.39451 * 120.40576 * 354.86035 * 10 9 7 12 12 C 1.38203 * 118.44920 * 180.26409 * 11 10 9 13 13 C 1.39161 * 119.17240 * 359.43772 * 12 11 10 14 14 N 1.39130 * 119.63531 * 180.25183 * 13 12 11 15 15 C 1.46505 * 119.99698 * 0.02562 * 14 13 12 16 16 C 1.52996 * 109.46849 * 179.97438 * 15 14 13 17 17 H 1.08999 * 109.47751 * 59.99689 * 16 15 14 18 18 C 1.53086 * 109.47006 * 179.97438 * 16 15 14 19 19 C 1.53202 * 109.14637 * 177.62587 * 18 16 15 20 20 C 1.53089 * 109.02314 * 303.12212 * 19 18 16 21 21 C 1.53039 * 109.48615 * 296.83278 * 20 19 18 22 22 C 1.53053 * 109.26945 * 297.59779 * 21 20 19 23 23 N 1.46840 * 109.50902 * 300.93066 * 22 21 20 24 24 C 1.46850 * 111.24121 * 61.75642 * 23 22 21 25 25 C 1.53016 * 109.50592 * 176.98855 * 20 19 18 26 26 C 1.52982 * 109.33353 * 56.87628 * 20 19 18 27 27 O 1.42901 * 109.47551 * 299.97925 * 16 15 14 28 28 N 1.32384 * 120.73744 * 0.27964 * 13 12 11 29 29 C 1.31928 * 121.69228 * 359.97438 * 28 13 12 30 30 H 0.96997 * 120.00047 * 0.02562 * 1 2 3 31 31 H 1.08005 * 120.77196 * 0.02562 * 11 10 9 32 32 H 1.08000 * 120.41168 * 179.71696 * 12 11 10 33 33 H 0.96996 * 120.00538 * 179.97438 * 14 13 12 34 34 H 1.08999 * 109.46934 * 299.99820 * 15 14 13 35 35 H 1.09007 * 109.47048 * 59.99318 * 15 14 13 36 36 H 1.09002 * 109.53094 * 297.52728 * 18 16 15 37 37 H 1.09008 * 109.52773 * 57.66242 * 18 16 15 38 38 H 1.09001 * 109.54073 * 62.98095 * 19 18 16 39 39 H 1.08997 * 109.54584 * 183.16391 * 19 18 16 40 40 H 1.08996 * 109.50573 * 57.54056 * 21 20 19 41 41 H 1.09008 * 109.50488 * 177.66290 * 21 20 19 42 42 H 1.08998 * 109.46498 * 180.91689 * 22 21 20 43 43 H 1.08999 * 109.45391 * 60.93470 * 22 21 20 44 44 H 1.00900 * 110.99855 * 185.88513 * 23 22 21 45 45 H 1.08997 * 109.46245 * 178.23917 * 24 23 22 46 46 H 1.08992 * 109.45669 * 58.25274 * 24 23 22 47 47 H 1.09007 * 109.50245 * 182.33186 * 25 20 19 48 48 H 1.08993 * 109.50558 * 302.41382 * 25 20 19 49 49 H 1.08997 * 109.48387 * 62.49936 * 26 20 19 50 50 H 1.08999 * 109.48517 * 182.52883 * 26 20 19 51 51 H 1.08003 * 119.62136 * 179.97438 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 3.7097 1.3465 0.0006 5 1 1.8910 2.3965 -1.2125 6 1 1.8909 2.3965 1.2125 7 6 2.0089 -1.2005 0.0005 8 1 3.0890 -1.2005 0.0001 9 8 1.3350 -2.3680 0.0005 10 6 2.0706 -3.5046 0.1082 11 6 3.4639 -3.4465 0.1052 12 6 4.1723 -4.6284 0.2115 13 6 3.4767 -5.8280 0.3290 14 7 4.1803 -7.0230 0.4419 15 6 5.6453 -7.0137 0.4370 16 6 6.1647 -8.4463 0.5738 17 1 5.8024 -9.0455 -0.2614 18 6 7.6955 -8.4367 0.5682 19 6 8.2077 -9.8671 0.7650 20 6 7.6326 -10.4281 2.0681 21 6 8.1443 -9.6011 3.2497 22 6 9.6682 -9.7205 3.3275 23 7 10.0418 -11.1310 3.4927 24 6 9.6026 -11.9356 2.3454 25 6 8.0766 -11.8826 2.2381 26 6 6.1051 -10.3600 2.0183 27 8 5.6964 -9.0077 1.8016 28 7 2.1530 -5.8448 0.3342 29 6 1.4453 -4.7364 0.2296 30 1 -0.4850 0.8400 -0.0004 31 1 3.9773 -2.5003 0.0180 32 1 5.2523 -4.6207 0.2078 33 1 3.7009 -7.8621 0.5245 34 1 6.0028 -6.5850 -0.4992 35 1 6.0076 -6.4148 1.2726 36 1 8.0540 -8.0494 -0.3856 37 1 8.0590 -7.8040 1.3780 38 1 7.8872 -10.4875 -0.0720 39 1 9.2964 -9.8605 0.8182 40 1 7.8678 -8.5562 3.1095 41 1 7.7024 -9.9743 4.1737 42 1 10.0346 -9.1457 4.1780 43 1 10.1101 -9.3329 2.4096 44 1 11.0350 -11.2268 3.6425 45 1 9.9213 -12.9688 2.4832 46 1 10.0449 -11.5376 1.4323 47 1 7.6335 -12.2948 3.1447 48 1 7.7514 -12.4655 1.3765 49 1 5.7397 -10.9849 1.2034 50 1 5.6943 -10.7171 2.9626 51 1 0.3666 -4.7890 0.2371 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162956956.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:37 Heat of formation + Delta-G solvation = -36.097207 kcal Electronic energy + Delta-G solvation = -30350.611844 eV Core-core repulsion = 26250.199771 eV Total energy + Delta-G solvation = -4100.412072 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.98522 -39.52640 -38.13540 -37.17738 -35.06188 -33.88517 -32.59462 -32.13247 -31.22957 -31.17342 -29.03919 -27.32228 -26.40709 -25.16998 -24.01772 -23.50397 -22.95722 -22.28227 -21.21555 -21.05131 -18.62924 -18.10243 -17.42427 -17.30338 -16.51103 -16.25820 -16.05537 -15.62463 -15.40153 -15.03406 -14.76975 -14.50740 -14.41782 -14.14251 -14.11615 -13.89895 -13.50250 -13.36237 -13.15277 -13.01266 -12.71732 -12.57526 -12.42389 -12.28375 -12.09630 -11.99526 -11.65319 -11.58899 -11.49952 -11.46514 -11.17972 -11.05077 -10.88491 -10.62391 -10.45615 -10.35427 -9.67614 -9.60614 -9.29265 -8.92472 -8.82612 -8.69603 -8.51120 -6.60394 -6.39076 -3.96130 2.08085 2.46755 3.14707 3.16005 3.21162 3.42791 3.62475 3.76118 4.00617 4.18741 4.25180 4.28775 4.57281 4.60930 4.71419 4.72153 4.81683 4.86201 4.95176 5.03062 5.04261 5.13773 5.16719 5.21989 5.25284 5.31753 5.34718 5.39965 5.43004 5.47417 5.53070 5.53972 5.61190 5.64426 5.67455 5.74546 5.78932 5.83687 5.96061 5.99605 6.04472 6.06965 6.56542 6.57421 6.77586 6.90405 6.97620 7.15150 7.23168 7.31393 7.73210 8.02439 8.21037 8.96410 9.06522 9.76803 10.79057 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.024103 B = 0.001773 C = 0.001699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.405056 B =15788.581299 C =16471.686760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.038 3.962 3 Si 0.939 3.061 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.389 4.389 8 H 0.088 0.912 9 O -0.179 6.179 10 C 0.063 3.937 11 C -0.155 4.155 12 C -0.186 4.186 13 C 0.313 3.687 14 N -0.734 5.734 15 C 0.148 3.852 16 C 0.083 3.917 17 H 0.063 0.937 18 C -0.149 4.149 19 C -0.113 4.113 20 C -0.092 4.092 21 C -0.102 4.102 22 C 0.055 3.945 23 N -0.691 5.691 24 C 0.058 3.942 25 C -0.106 4.106 26 C 0.073 3.927 27 O -0.365 6.365 28 N -0.502 5.502 29 C 0.070 3.930 30 H 0.268 0.732 31 H 0.135 0.865 32 H 0.115 0.885 33 H 0.399 0.601 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.032 0.968 44 H 0.341 0.659 45 H 0.072 0.928 46 H 0.032 0.968 47 H 0.073 0.927 48 H 0.066 0.934 49 H 0.049 0.951 50 H 0.094 0.906 51 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.497 -22.569 2.940 31.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.166 4.166 3 Si 0.764 3.236 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.466 4.466 8 H 0.106 0.894 9 O -0.083 6.083 10 C 0.008 3.992 11 C -0.182 4.182 12 C -0.211 4.211 13 C 0.080 3.920 14 N -0.374 5.374 15 C 0.023 3.977 16 C 0.024 3.976 17 H 0.081 0.919 18 C -0.187 4.187 19 C -0.150 4.150 20 C -0.093 4.093 21 C -0.140 4.140 22 C -0.074 4.074 23 N -0.322 5.322 24 C -0.071 4.071 25 C -0.144 4.144 26 C -0.004 4.004 27 O -0.284 6.284 28 N -0.218 5.218 29 C -0.089 4.089 30 H 0.078 0.922 31 H 0.153 0.847 32 H 0.133 0.867 33 H 0.234 0.766 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.092 0.908 43 H 0.050 0.950 44 H 0.159 0.841 45 H 0.091 0.909 46 H 0.050 0.950 47 H 0.092 0.908 48 H 0.085 0.915 49 H 0.067 0.933 50 H 0.112 0.888 51 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 20.142 -23.084 3.486 30.834 hybrid contribution 1.743 1.452 -0.910 2.444 sum 21.885 -21.632 2.576 30.879 Atomic orbital electron populations 1.70052 1.05846 1.27374 1.46696 1.25237 0.95836 0.98664 0.96853 0.85676 0.79052 0.80639 0.78199 1.19242 1.20231 1.20216 1.21270 0.91598 0.81004 1.52711 0.89445 1.83994 1.33429 1.10911 1.79938 1.20243 0.90804 0.89678 0.98517 1.21394 0.93935 0.98414 1.04445 1.21066 0.99378 0.91688 1.08944 1.17909 0.88135 0.85926 0.99987 1.43755 1.03487 1.05858 1.84270 1.21162 0.81284 0.94140 1.01138 1.22298 0.93191 0.94591 0.87487 0.91949 1.22181 0.95557 0.97735 1.03224 1.21719 1.00692 0.95875 0.96724 1.21169 0.96428 0.95869 0.95826 1.21575 0.94235 1.00525 0.97653 1.21987 0.96630 0.88698 1.00054 1.60254 1.20775 1.09358 1.41821 1.21914 0.95860 0.97733 0.91631 1.21557 0.95301 0.95259 1.02249 1.22588 0.92444 0.83734 1.01677 1.88043 1.74120 1.27052 1.39182 1.66926 1.06083 1.30740 1.18083 1.21460 0.99124 0.84904 1.03443 0.92179 0.84695 0.86720 0.76634 0.91496 0.92063 0.90618 0.90403 0.91827 0.91341 0.90559 0.91144 0.90850 0.94993 0.84138 0.90913 0.95026 0.90840 0.91527 0.93256 0.88775 0.83144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.46 13.67 55.48 0.76 -24.70 16 2 C 0.04 1.04 5.49 -17.52 -0.10 0.95 16 3 Si 0.94 20.60 29.55 -169.99 -5.02 15.58 16 4 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 5 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 6 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 7 C -0.39 -10.88 9.50 30.87 0.29 -10.59 16 8 H 0.09 2.26 5.25 -52.48 -0.28 1.98 16 9 O -0.18 -5.12 9.77 -0.09 0.00 -5.13 16 10 C 0.06 1.54 6.67 -38.97 -0.26 1.28 16 11 C -0.15 -3.38 9.26 -39.14 -0.36 -3.75 16 12 C -0.19 -3.53 9.32 -39.25 -0.37 -3.89 16 13 C 0.31 5.96 7.65 -154.90 -1.19 4.78 16 14 N -0.73 -11.10 5.63 -60.38 -0.34 -11.44 16 15 C 0.15 1.71 4.58 -4.04 -0.02 1.69 16 16 C 0.08 0.76 2.73 -26.69 -0.07 0.69 16 17 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 18 C -0.15 -1.08 5.06 -26.58 -0.13 -1.21 16 19 C -0.11 -0.73 4.20 -26.58 -0.11 -0.84 16 20 C -0.09 -0.63 0.52 -154.44 -0.08 -0.71 16 21 C -0.10 -0.77 4.51 -26.68 -0.12 -0.89 16 22 C 0.06 0.36 6.31 -3.83 -0.02 0.34 16 23 N -0.69 -4.31 6.84 -113.80 -0.78 -5.09 16 24 C 0.06 0.32 6.31 -3.82 -0.02 0.30 16 25 C -0.11 -0.63 4.89 -26.69 -0.13 -0.76 16 26 C 0.07 0.59 5.54 37.15 0.21 0.79 16 27 O -0.37 -3.88 9.63 -35.23 -0.34 -4.22 16 28 N -0.50 -10.59 10.39 -12.25 -0.13 -10.71 16 29 C 0.07 1.57 11.14 -17.35 -0.19 1.38 16 30 H 0.27 7.24 8.31 -40.82 -0.34 6.91 16 31 H 0.14 2.88 5.75 -52.48 -0.30 2.58 16 32 H 0.11 1.81 6.70 -52.49 -0.35 1.46 16 33 H 0.40 5.90 8.47 -40.82 -0.35 5.55 16 34 H 0.07 0.72 7.92 -51.93 -0.41 0.30 16 35 H 0.06 0.74 7.93 -51.93 -0.41 0.33 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.60 6.58 -51.92 -0.34 0.25 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.43 4.96 -51.93 -0.26 0.17 16 40 H 0.08 0.66 6.11 -51.93 -0.32 0.34 16 41 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.03 0.20 6.45 -51.93 -0.33 -0.13 16 44 H 0.34 1.63 8.90 -39.29 -0.35 1.28 16 45 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 46 H 0.03 0.18 6.59 -51.93 -0.34 -0.17 16 47 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 48 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 49 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 50 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 51 H 0.15 3.18 8.06 -52.48 -0.42 2.76 16 LS Contribution 389.85 15.07 5.88 5.88 Total: -1.00 -31.93 389.85 -10.48 -42.41 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -7.83 Total: 7.86 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: -2.68 Total: -10.44 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: -0.49 Total: -51.94 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: -0.34 Total: -9.34 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.93 -10.48 -42.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162956956.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.313 kcal (2) G-P(sol) polarization free energy of solvation -31.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds