Wall clock time and date at job start Wed Apr 1 2020 04:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31580 * 1 3 3 Si 1.86806 * 119.99689 * 2 1 4 4 H 1.48497 * 109.46964 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47266 * 299.99931 * 3 2 1 6 6 H 1.48500 * 109.46992 * 59.99895 * 3 2 1 7 7 C 1.38623 * 120.00134 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00069 * 179.97438 * 7 2 1 9 9 O 1.34804 * 120.00161 * 0.02562 * 7 2 1 10 10 C 1.35818 * 117.00090 * 185.07885 * 9 7 2 11 11 C 1.39451 * 120.40576 * 354.86035 * 10 9 7 12 12 C 1.38203 * 118.44920 * 180.26409 * 11 10 9 13 13 C 1.39161 * 119.17240 * 359.43772 * 12 11 10 14 14 N 1.39130 * 119.63531 * 180.25183 * 13 12 11 15 15 C 1.46505 * 119.99698 * 0.02562 * 14 13 12 16 16 C 1.52996 * 109.46849 * 179.97438 * 15 14 13 17 17 H 1.08999 * 109.47751 * 59.99689 * 16 15 14 18 18 C 1.53086 * 109.47006 * 179.97438 * 16 15 14 19 19 C 1.53202 * 109.14637 * 177.62587 * 18 16 15 20 20 C 1.53089 * 109.02314 * 303.12212 * 19 18 16 21 21 C 1.53039 * 109.48615 * 296.83278 * 20 19 18 22 22 C 1.53053 * 109.26945 * 297.59779 * 21 20 19 23 23 N 1.46840 * 109.50902 * 300.93066 * 22 21 20 24 24 C 1.46850 * 111.24121 * 61.75642 * 23 22 21 25 25 C 1.53016 * 109.50592 * 176.98855 * 20 19 18 26 26 C 1.52982 * 109.33353 * 56.87628 * 20 19 18 27 27 O 1.42901 * 109.47551 * 299.97925 * 16 15 14 28 28 N 1.32384 * 120.73744 * 0.27964 * 13 12 11 29 29 C 1.31928 * 121.69228 * 359.97438 * 28 13 12 30 30 H 0.96997 * 120.00047 * 0.02562 * 1 2 3 31 31 H 1.08005 * 120.77196 * 0.02562 * 11 10 9 32 32 H 1.08000 * 120.41168 * 179.71696 * 12 11 10 33 33 H 0.96996 * 120.00538 * 179.97438 * 14 13 12 34 34 H 1.08999 * 109.46934 * 299.99820 * 15 14 13 35 35 H 1.09007 * 109.47048 * 59.99318 * 15 14 13 36 36 H 1.09002 * 109.53094 * 297.52728 * 18 16 15 37 37 H 1.09008 * 109.52773 * 57.66242 * 18 16 15 38 38 H 1.09001 * 109.54073 * 62.98095 * 19 18 16 39 39 H 1.08997 * 109.54584 * 183.16391 * 19 18 16 40 40 H 1.08996 * 109.50573 * 57.54056 * 21 20 19 41 41 H 1.09008 * 109.50488 * 177.66290 * 21 20 19 42 42 H 1.08998 * 109.46498 * 180.91689 * 22 21 20 43 43 H 1.08999 * 109.45391 * 60.93470 * 22 21 20 44 44 H 1.00900 * 110.99855 * 185.88513 * 23 22 21 45 45 H 1.08997 * 109.46245 * 178.23917 * 24 23 22 46 46 H 1.08992 * 109.45669 * 58.25274 * 24 23 22 47 47 H 1.09007 * 109.50245 * 182.33186 * 25 20 19 48 48 H 1.08993 * 109.50558 * 302.41382 * 25 20 19 49 49 H 1.08997 * 109.48387 * 62.49936 * 26 20 19 50 50 H 1.08999 * 109.48517 * 182.52883 * 26 20 19 51 51 H 1.08003 * 119.62136 * 179.97438 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 3.7097 1.3465 0.0006 5 1 1.8910 2.3965 -1.2125 6 1 1.8909 2.3965 1.2125 7 6 2.0089 -1.2005 0.0005 8 1 3.0890 -1.2005 0.0001 9 8 1.3350 -2.3680 0.0005 10 6 2.0706 -3.5046 0.1082 11 6 3.4639 -3.4465 0.1052 12 6 4.1723 -4.6284 0.2115 13 6 3.4767 -5.8280 0.3290 14 7 4.1803 -7.0230 0.4419 15 6 5.6453 -7.0137 0.4370 16 6 6.1647 -8.4463 0.5738 17 1 5.8024 -9.0455 -0.2614 18 6 7.6955 -8.4367 0.5682 19 6 8.2077 -9.8671 0.7650 20 6 7.6326 -10.4281 2.0681 21 6 8.1443 -9.6011 3.2497 22 6 9.6682 -9.7205 3.3275 23 7 10.0418 -11.1310 3.4927 24 6 9.6026 -11.9356 2.3454 25 6 8.0766 -11.8826 2.2381 26 6 6.1051 -10.3600 2.0183 27 8 5.6964 -9.0077 1.8016 28 7 2.1530 -5.8448 0.3342 29 6 1.4453 -4.7364 0.2296 30 1 -0.4850 0.8400 -0.0004 31 1 3.9773 -2.5003 0.0180 32 1 5.2523 -4.6207 0.2078 33 1 3.7009 -7.8621 0.5245 34 1 6.0028 -6.5850 -0.4992 35 1 6.0076 -6.4148 1.2726 36 1 8.0540 -8.0494 -0.3856 37 1 8.0590 -7.8040 1.3780 38 1 7.8872 -10.4875 -0.0720 39 1 9.2964 -9.8605 0.8182 40 1 7.8678 -8.5562 3.1095 41 1 7.7024 -9.9743 4.1737 42 1 10.0346 -9.1457 4.1780 43 1 10.1101 -9.3329 2.4096 44 1 11.0350 -11.2268 3.6425 45 1 9.9213 -12.9688 2.4832 46 1 10.0449 -11.5376 1.4323 47 1 7.6335 -12.2948 3.1447 48 1 7.7514 -12.4655 1.3765 49 1 5.7397 -10.9849 1.2034 50 1 5.6943 -10.7171 2.9626 51 1 0.3666 -4.7890 0.2371 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162956956.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:36 Heat of formation + Delta-G solvation = -58.472588 kcal Electronic energy + Delta-G solvation = -30351.582113 eV Core-core repulsion = 26250.199771 eV Total energy + Delta-G solvation = -4101.382342 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.61173 -41.19791 -39.19423 -38.57869 -36.29823 -34.46919 -34.25687 -33.26765 -32.88088 -31.75668 -30.26563 -28.46167 -27.29868 -26.92394 -24.99036 -24.41722 -23.87946 -23.23218 -22.60367 -21.82783 -19.98882 -19.24278 -19.02013 -17.93840 -17.76323 -17.55351 -17.12523 -16.53539 -16.20559 -16.05730 -15.83721 -15.71413 -15.58188 -15.35025 -15.12866 -15.01864 -14.76465 -14.59963 -14.30238 -14.00580 -13.83586 -13.56295 -13.51740 -13.33422 -13.20221 -13.09615 -12.90554 -12.74084 -12.62183 -12.16337 -12.08692 -12.07659 -11.82795 -11.56113 -11.47734 -11.16422 -11.00609 -10.92953 -10.57827 -10.38689 -10.32444 -10.28174 -9.28558 -8.41495 -8.23279 -6.06239 0.38381 0.75107 1.38208 1.46669 1.56225 2.19004 2.32632 2.77422 2.91482 3.22385 3.31858 3.54770 3.62721 3.70965 3.73002 3.85173 3.90517 3.96965 4.11040 4.13088 4.22834 4.30953 4.34022 4.38093 4.42165 4.48683 4.54533 4.59549 4.60939 4.69507 4.72958 4.79176 4.84553 4.87854 4.92038 4.96962 4.98551 4.99503 5.07556 5.14874 5.16235 5.28272 5.29718 5.42237 5.49580 5.51459 5.57388 6.02768 6.11439 6.24494 6.33805 6.51867 6.76606 7.02717 7.35301 7.84126 8.82087 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.024103 B = 0.001773 C = 0.001699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.405056 B =15788.581299 C =16471.686760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.025 4.025 3 Si 1.018 2.982 4 H -0.249 1.249 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.409 4.409 8 H 0.102 0.898 9 O -0.229 6.229 10 C 0.022 3.978 11 C -0.148 4.148 12 C -0.181 4.181 13 C 0.328 3.672 14 N -0.722 5.722 15 C 0.140 3.860 16 C 0.087 3.913 17 H 0.069 0.931 18 C -0.144 4.144 19 C -0.108 4.108 20 C -0.087 4.087 21 C -0.100 4.100 22 C 0.059 3.941 23 N -0.701 5.701 24 C 0.058 3.942 25 C -0.104 4.104 26 C 0.070 3.930 27 O -0.390 6.390 28 N -0.517 5.517 29 C 0.066 3.934 30 H 0.271 0.729 31 H 0.139 0.861 32 H 0.155 0.845 33 H 0.402 0.598 34 H 0.086 0.914 35 H 0.061 0.939 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.064 0.936 41 H 0.054 0.946 42 H 0.072 0.928 43 H 0.037 0.963 44 H 0.350 0.650 45 H 0.081 0.919 46 H 0.037 0.963 47 H 0.063 0.937 48 H 0.077 0.923 49 H 0.058 0.942 50 H 0.090 0.910 51 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.182 -23.891 2.466 34.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.223 4.223 3 Si 0.838 3.162 4 H -0.172 1.172 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.485 4.485 8 H 0.119 0.881 9 O -0.135 6.135 10 C -0.031 4.031 11 C -0.175 4.175 12 C -0.205 4.205 13 C 0.092 3.908 14 N -0.360 5.360 15 C 0.016 3.984 16 C 0.029 3.971 17 H 0.087 0.913 18 C -0.182 4.182 19 C -0.145 4.145 20 C -0.088 4.088 21 C -0.138 4.138 22 C -0.070 4.070 23 N -0.333 5.333 24 C -0.071 4.071 25 C -0.142 4.142 26 C -0.007 4.007 27 O -0.309 6.309 28 N -0.235 5.235 29 C -0.092 4.092 30 H 0.080 0.920 31 H 0.157 0.843 32 H 0.173 0.827 33 H 0.237 0.763 34 H 0.104 0.896 35 H 0.079 0.921 36 H 0.109 0.891 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.083 0.917 41 H 0.073 0.927 42 H 0.091 0.909 43 H 0.055 0.945 44 H 0.168 0.832 45 H 0.099 0.901 46 H 0.055 0.945 47 H 0.082 0.918 48 H 0.096 0.904 49 H 0.076 0.924 50 H 0.108 0.892 51 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 23.882 -24.490 3.017 34.340 hybrid contribution 0.751 1.480 -0.701 1.802 sum 24.634 -23.010 2.316 33.788 Atomic orbital electron populations 1.70204 1.07982 1.28545 1.49342 1.26547 0.96850 1.02644 0.96209 0.84534 0.78356 0.74995 0.78355 1.17234 1.19538 1.19674 1.21808 0.92463 0.81472 1.52786 0.88091 1.83959 1.34997 1.11970 1.82580 1.20601 0.92176 0.89251 1.01044 1.21570 0.93004 0.99780 1.03176 1.21380 1.01255 0.90321 1.07552 1.18354 0.87811 0.87556 0.97042 1.44010 1.05088 1.04571 1.82329 1.21486 0.78709 0.96144 1.02034 1.22275 0.94446 0.93076 0.87286 0.91334 1.22147 0.93816 0.98329 1.03903 1.21690 1.00981 0.95380 0.96470 1.21105 0.95457 0.96361 0.95833 1.21513 0.95053 0.99839 0.97354 1.21925 0.95749 0.89069 1.00300 1.60238 1.21591 1.09147 1.42327 1.21941 0.95420 0.98147 0.91594 1.21545 0.95684 0.94645 1.02304 1.22684 0.93418 0.82749 1.01826 1.88000 1.74786 1.28301 1.39838 1.67020 1.07194 1.29872 1.19384 1.21526 0.99546 0.84901 1.03186 0.92006 0.84332 0.82701 0.76257 0.89604 0.92069 0.89124 0.90807 0.91080 0.90676 0.91704 0.92699 0.90919 0.94466 0.83155 0.90084 0.94486 0.91775 0.90421 0.92412 0.89188 0.83150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.71 13.67 21.61 0.30 -56.41 16 2 C -0.03 -1.44 5.49 84.82 0.47 -0.98 16 3 Si 1.02 42.63 29.55 68.60 2.03 44.66 16 4 H -0.25 -9.50 7.11 99.48 0.71 -8.79 16 5 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 6 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 7 C -0.41 -23.56 9.50 67.91 0.64 -22.91 16 8 H 0.10 5.26 5.25 -2.91 -0.02 5.25 16 9 O -0.23 -13.73 9.77 -23.22 -0.23 -13.96 16 10 C 0.02 1.12 6.67 22.67 0.15 1.28 16 11 C -0.15 -6.40 9.26 22.55 0.21 -6.19 16 12 C -0.18 -6.40 9.32 22.48 0.21 -6.19 16 13 C 0.33 11.85 7.65 133.03 1.02 12.87 16 14 N -0.72 -19.89 5.63 -344.94 -1.94 -21.84 16 15 C 0.14 2.76 4.58 86.38 0.40 3.15 16 16 C 0.09 1.35 2.73 30.62 0.08 1.44 16 17 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 18 C -0.14 -1.61 5.06 30.69 0.16 -1.46 16 19 C -0.11 -1.05 4.20 30.69 0.13 -0.92 16 20 C -0.09 -1.01 0.52 -52.14 -0.03 -1.03 16 21 C -0.10 -1.38 4.51 30.62 0.14 -1.25 16 22 C 0.06 0.67 6.31 86.33 0.54 1.21 16 23 N -0.70 -7.41 6.84 -513.96 -3.52 -10.92 16 24 C 0.06 0.51 6.31 86.33 0.54 1.06 16 25 C -0.10 -1.02 4.89 30.62 0.15 -0.87 16 26 C 0.07 1.01 5.54 71.98 0.40 1.41 16 27 O -0.39 -7.52 9.63 -148.98 -1.44 -8.96 16 28 N -0.52 -21.56 10.39 -192.67 -2.00 -23.56 16 29 C 0.07 3.04 11.14 84.78 0.94 3.98 16 30 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 31 H 0.14 5.80 5.75 -2.91 -0.02 5.78 16 32 H 0.16 4.21 6.70 -2.91 -0.02 4.19 16 33 H 0.40 10.95 8.47 -92.71 -0.79 10.16 16 34 H 0.09 1.44 7.92 -2.39 -0.02 1.43 16 35 H 0.06 1.26 7.93 -2.38 -0.02 1.25 16 36 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.07 0.92 6.58 -2.38 -0.02 0.90 16 38 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.07 0.68 4.96 -2.39 -0.01 0.67 16 40 H 0.06 1.04 6.11 -2.39 -0.01 1.03 16 41 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 42 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.04 0.39 6.45 -2.39 -0.02 0.37 16 44 H 0.35 2.64 8.90 -89.69 -0.80 1.84 16 45 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 46 H 0.04 0.30 6.59 -2.39 -0.02 0.28 16 47 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 48 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 49 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 50 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 51 H 0.15 6.72 8.06 -2.91 -0.02 6.69 16 Total: -1.00 -72.12 389.85 -1.26 -73.38 By element: Atomic # 1 Polarization: 33.63 SS G_CDS: -0.61 Total: 33.02 kcal Atomic # 6 Polarization: -21.56 SS G_CDS: 6.15 Total: -15.41 kcal Atomic # 7 Polarization: -105.57 SS G_CDS: -7.16 Total: -112.73 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: -1.66 Total: -22.91 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -72.12 -1.26 -73.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162956956.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.907 kcal (2) G-P(sol) polarization free energy of solvation -72.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds