Wall clock time and date at job start Wed Apr 1 2020 05:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38262 * 120.00038 * 2 1 4 4 C 1.38205 * 120.00475 * 179.97438 * 3 2 1 5 5 C 1.38253 * 119.99884 * 0.02562 * 4 3 2 6 6 C 1.38220 * 120.00046 * 359.94758 * 5 4 3 7 7 C 1.38208 * 120.00408 * 179.97438 * 2 1 3 8 8 C 1.50701 * 119.99804 * 0.02562 * 7 2 1 9 9 C 1.52999 * 109.47402 * 85.02067 * 8 7 2 10 10 C 1.50701 * 109.47402 * 180.02562 * 9 8 7 11 11 O 1.21281 * 119.99514 * 359.97438 * 10 9 8 12 12 N 1.34770 * 119.99827 * 180.02562 * 10 9 8 13 13 C 1.46499 * 119.99562 * 180.02562 * 12 10 9 14 14 C 1.53008 * 109.47014 * 179.97438 * 13 12 10 15 15 C 1.53005 * 109.47181 * 179.97438 * 14 13 12 16 16 N 1.46894 * 109.47259 * 179.97438 * 15 14 13 17 17 C 1.46892 * 111.00269 * 180.02562 * 16 15 14 18 18 C 1.50699 * 109.47566 * 180.02562 * 17 16 15 19 19 O 1.21299 * 119.99609 * 359.97438 * 18 17 16 20 20 N 1.34778 * 120.00499 * 180.02562 * 18 17 16 21 21 C 1.37096 * 119.99975 * 180.02562 * 20 18 17 22 22 H 1.08000 * 119.99980 * 359.97438 * 21 20 18 23 23 C 1.38951 * 119.99554 * 180.02562 * 21 20 18 24 24 N 1.31412 * 120.00126 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99896 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46906 * 59.99823 * 25 23 21 27 27 H 1.48498 * 109.47305 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.47130 * 300.00174 * 25 23 21 29 29 H 1.08997 * 109.47001 * 270.01980 * 1 2 3 30 30 H 1.08997 * 109.47350 * 30.02356 * 1 2 3 31 31 H 1.08998 * 109.46705 * 150.02574 * 1 2 3 32 32 H 1.08000 * 119.99741 * 359.97438 * 3 2 1 33 33 H 1.08005 * 120.00151 * 179.97438 * 4 3 2 34 34 H 1.08002 * 120.00347 * 179.97438 * 5 4 3 35 35 H 1.08000 * 119.99660 * 180.32192 * 6 5 4 36 36 H 1.09003 * 109.47025 * 205.01748 * 8 7 2 37 37 H 1.08991 * 109.47184 * 325.01693 * 8 7 2 38 38 H 1.08997 * 109.46738 * 300.00295 * 9 8 7 39 39 H 1.08999 * 109.46965 * 59.99689 * 9 8 7 40 40 H 0.96994 * 120.00421 * 359.97438 * 12 10 9 41 41 H 1.08997 * 109.47516 * 299.99653 * 13 12 10 42 42 H 1.08999 * 109.47480 * 59.99839 * 13 12 10 43 43 H 1.09003 * 109.46800 * 299.99741 * 14 13 12 44 44 H 1.08991 * 109.47349 * 59.99649 * 14 13 12 45 45 H 1.08999 * 109.46630 * 300.00220 * 15 14 13 46 46 H 1.09006 * 109.46786 * 59.99594 * 15 14 13 47 47 H 1.00899 * 110.99788 * 56.04098 * 16 15 14 48 48 H 1.08997 * 109.47076 * 300.00010 * 17 16 15 49 49 H 1.08996 * 109.47137 * 59.99954 * 17 16 15 50 50 H 0.97000 * 119.99371 * 359.97438 * 20 18 17 51 51 H 0.97001 * 119.99816 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5803 1.1975 0.0005 5 6 4.2717 0.0002 0.0005 6 6 3.5806 -1.1969 0.0011 7 6 2.1981 -1.1969 0.0005 8 6 1.4446 -2.5020 0.0005 9 6 1.0817 -2.8815 -1.4365 10 6 0.3277 -4.1863 -1.4365 11 8 0.1032 -4.7568 -0.3900 12 7 -0.0961 -4.7196 -2.5993 13 6 -0.8295 -5.9878 -2.5992 14 6 -1.1923 -6.3673 -4.0363 15 6 -1.9578 -7.6921 -4.0363 16 7 -2.3066 -8.0562 -5.4159 17 6 -3.0448 -9.3256 -5.4549 18 6 -3.3840 -9.6659 -6.8832 19 8 -3.0446 -8.9236 -7.7805 20 7 -4.0653 -10.7945 -7.1636 21 6 -4.3734 -11.1043 -8.4631 22 1 -4.0705 -10.4437 -9.2621 23 6 -5.0763 -12.2676 -8.7520 24 7 -5.4453 -13.0710 -7.7797 25 14 -5.4968 -12.6894 -10.5226 26 1 -4.2451 -12.8214 -11.3106 27 1 -6.2435 -13.9723 -10.5619 28 1 -6.3355 -11.6099 -11.1028 29 1 -0.3633 0.0004 1.0276 30 1 -0.3634 0.8897 -0.5142 31 1 -0.3633 -0.8902 -0.5134 32 1 1.6582 2.1327 -0.0004 33 1 4.1203 2.1329 0.0001 34 1 5.3517 0.0002 0.0005 35 1 4.1207 -2.1321 0.0064 36 1 2.0693 -3.2822 0.4356 37 1 0.5336 -2.3956 0.5893 38 1 0.4571 -2.1013 -1.8716 39 1 1.9929 -2.9879 -2.0253 40 1 0.0838 -4.2636 -3.4362 41 1 -0.2058 -6.7683 -2.1634 42 1 -1.7409 -5.8804 -2.0110 43 1 -1.8163 -5.5868 -4.4717 44 1 -0.2812 -6.4746 -4.6248 45 1 -1.3335 -8.4724 -3.6009 46 1 -2.8690 -7.5852 -3.4476 47 1 -1.4835 -8.0981 -5.9980 48 1 -2.4282 -10.1175 -5.0297 49 1 -3.9632 -9.2297 -4.8759 50 1 -4.3370 -11.3879 -6.4460 51 1 -5.9356 -13.8832 -7.9815 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167293233.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:10 Heat of formation + Delta-G solvation = -72.845794 kcal Electronic energy + Delta-G solvation = -27779.524222 eV Core-core repulsion = 23677.518611 eV Total energy + Delta-G solvation = -4102.005611 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.37969 -39.62103 -38.32491 -36.62132 -34.95111 -34.59292 -33.84828 -32.87508 -31.64492 -31.16760 -30.12461 -27.55742 -27.09774 -25.39379 -24.34342 -23.05471 -22.33373 -21.74235 -21.01250 -20.40756 -19.22232 -17.89704 -17.47501 -16.69451 -16.54269 -16.46391 -16.09379 -15.80843 -15.44303 -15.29153 -14.76088 -14.50880 -14.48120 -14.26014 -13.95161 -13.60229 -13.57406 -13.49434 -13.38123 -13.17669 -12.84468 -12.74727 -12.58320 -12.17891 -12.07306 -11.84853 -11.80089 -11.70064 -11.47409 -11.43569 -11.27201 -11.20297 -11.07714 -10.94631 -10.44586 -10.22069 -10.15501 -9.50510 -9.35888 -9.20966 -8.97298 -8.48050 -8.08400 -7.96534 -6.42022 -3.83027 0.91997 0.97391 2.35097 2.84902 3.19863 3.25649 3.29977 3.34305 3.90253 4.07754 4.22321 4.29880 4.37336 4.50809 4.55595 4.57459 4.70664 4.76126 4.80166 4.89446 4.99375 5.03654 5.06573 5.11783 5.17631 5.20872 5.25225 5.26577 5.41178 5.42973 5.45812 5.49266 5.57856 5.61512 5.73469 5.78478 5.83061 5.95512 5.97686 6.01910 6.08352 6.10851 6.15820 6.26169 6.26255 6.60891 7.17956 7.18197 7.54573 7.63216 7.92356 8.05609 8.60842 9.17259 9.53787 10.05234 10.75636 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.033968 B = 0.001107 C = 0.001098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.118700 B =25292.952772 C =25500.718646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.081 4.081 3 C -0.120 4.120 4 C -0.121 4.121 5 C -0.125 4.125 6 C -0.112 4.112 7 C -0.084 4.084 8 C -0.066 4.066 9 C -0.136 4.136 10 C 0.511 3.489 11 O -0.541 6.541 12 N -0.730 5.730 13 C 0.120 3.880 14 C -0.129 4.129 15 C 0.062 3.938 16 N -0.670 5.670 17 C 0.051 3.949 18 C 0.440 3.560 19 O -0.584 6.584 20 N -0.563 5.563 21 C -0.301 4.301 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.902 5.902 25 Si 0.931 3.069 26 H -0.274 1.274 27 H -0.284 1.284 28 H -0.273 1.273 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.402 0.598 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.080 0.920 44 H 0.069 0.931 45 H 0.029 0.971 46 H 0.074 0.926 47 H 0.349 0.651 48 H 0.044 0.956 49 H 0.086 0.914 50 H 0.392 0.608 51 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.455 25.170 18.402 35.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.081 4.081 3 C -0.138 4.138 4 C -0.139 4.139 5 C -0.143 4.143 6 C -0.130 4.130 7 C -0.084 4.084 8 C -0.103 4.103 9 C -0.176 4.176 10 C 0.297 3.703 11 O -0.418 6.418 12 N -0.382 5.382 13 C -0.004 4.004 14 C -0.167 4.167 15 C -0.068 4.068 16 N -0.302 5.302 17 C -0.082 4.082 18 C 0.225 3.775 19 O -0.469 6.469 20 N -0.199 5.199 21 C -0.431 4.431 22 H 0.120 0.880 23 C -0.178 4.178 24 N -0.543 5.543 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.139 0.861 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.236 0.764 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.099 0.901 44 H 0.087 0.913 45 H 0.047 0.953 46 H 0.092 0.908 47 H 0.168 0.832 48 H 0.062 0.938 49 H 0.105 0.895 50 H 0.226 0.774 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 15.821 25.425 18.527 35.213 hybrid contribution 0.433 -1.074 -0.670 1.338 sum 16.254 24.351 17.857 34.293 Atomic orbital electron populations 1.20897 0.91191 1.03000 1.02672 1.19819 0.96082 0.92608 0.99599 1.21047 0.94308 0.97477 1.00984 1.21140 0.94339 0.98094 1.00332 1.21139 0.99886 0.92536 1.00719 1.21091 0.93584 0.98256 1.00117 1.19762 0.93662 0.94453 1.00513 1.20327 1.00886 0.93739 0.95383 1.21680 1.01398 0.95119 0.99426 1.20700 0.79174 0.86845 0.83574 1.90721 1.56837 1.62846 1.31404 1.46056 1.58120 1.24790 1.09273 1.21332 0.96499 0.85123 0.97478 1.21745 1.01019 0.98850 0.95109 1.21830 0.99023 0.94989 0.90948 1.60041 1.29010 1.32600 1.08545 1.21667 0.99105 0.90341 0.97087 1.19813 0.84376 0.83596 0.89678 1.90518 1.57823 1.50896 1.47641 1.41855 1.48988 1.19915 1.09181 1.19663 1.32926 1.06024 0.84465 0.87966 1.25259 0.96995 0.95856 0.99734 1.69605 1.39197 1.13360 1.32143 0.85918 0.78713 0.77639 0.81946 1.19917 1.20958 1.19863 0.90955 0.91453 0.91110 0.86121 0.86190 0.86141 0.85993 0.90170 0.89905 0.88637 0.88647 0.76373 0.91467 0.91233 0.90122 0.91275 0.95254 0.90781 0.83198 0.93823 0.89538 0.77435 0.91801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.65 9.22 36.00 0.33 -0.32 16 2 C -0.08 -0.55 5.88 -104.63 -0.62 -1.17 16 3 C -0.12 -0.77 9.70 -39.58 -0.38 -1.15 16 4 C -0.12 -0.74 10.05 -39.59 -0.40 -1.14 16 5 C -0.12 -0.78 10.05 -39.58 -0.40 -1.18 16 6 C -0.11 -0.76 9.68 -39.58 -0.38 -1.14 16 7 C -0.08 -0.59 5.13 -104.63 -0.54 -1.13 16 8 C -0.07 -0.47 3.94 -27.88 -0.11 -0.57 16 9 C -0.14 -0.83 5.49 -27.88 -0.15 -0.98 16 10 C 0.51 4.63 7.83 -10.99 -0.09 4.54 16 11 O -0.54 -7.10 15.98 5.56 0.09 -7.01 16 12 N -0.73 -5.58 5.56 -60.29 -0.33 -5.92 16 13 C 0.12 1.06 5.67 -4.04 -0.02 1.04 16 14 C -0.13 -1.18 5.59 -26.72 -0.15 -1.33 16 15 C 0.06 0.72 5.69 -3.82 -0.02 0.69 16 16 N -0.67 -10.50 6.12 -115.07 -0.70 -11.21 16 17 C 0.05 0.89 6.17 -4.98 -0.03 0.86 16 18 C 0.44 10.40 7.82 -10.98 -0.09 10.31 16 19 O -0.58 -15.86 15.78 5.54 0.09 -15.77 16 20 N -0.56 -14.29 5.29 -10.96 -0.06 -14.35 16 21 C -0.30 -8.42 9.68 -14.93 -0.14 -8.57 16 22 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 23 C 0.02 0.62 5.50 -17.47 -0.10 0.53 16 24 N -0.90 -24.53 13.05 55.50 0.72 -23.81 16 25 Si 0.93 21.01 29.55 -169.99 -5.02 15.99 16 26 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 27 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 28 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.30 8.09 -51.93 -0.42 -0.12 16 31 H 0.07 0.37 5.43 -51.93 -0.28 0.09 16 32 H 0.12 0.57 8.06 -52.49 -0.42 0.15 16 33 H 0.12 0.51 8.06 -52.48 -0.42 0.09 16 34 H 0.12 0.54 8.06 -52.49 -0.42 0.11 16 35 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 36 H 0.08 0.62 8.01 -51.93 -0.42 0.21 16 37 H 0.08 0.65 6.94 -51.93 -0.36 0.29 16 38 H 0.10 0.46 6.91 -51.93 -0.36 0.10 16 39 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.40 2.09 8.47 -40.82 -0.35 1.74 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.35 5.59 8.43 -39.29 -0.33 5.26 16 48 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 49 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 50 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 51 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 425.03 15.07 6.41 6.41 Total: -1.00 -34.14 425.03 -10.37 -44.51 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: -8.27 Total: 11.86 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: -3.28 Total: -0.70 kcal Atomic # 7 Polarization: -54.91 SS G_CDS: -0.37 Total: -55.28 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: 0.18 Total: -22.78 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 6.41 Total: 6.41 kcal Total: -34.14 -10.37 -44.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167293233.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.340 kcal (2) G-P(sol) polarization free energy of solvation -34.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds