Wall clock time and date at job start Wed Apr 1 2020 05:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38262 * 120.00038 * 2 1 4 4 C 1.38205 * 120.00475 * 179.97438 * 3 2 1 5 5 C 1.38253 * 119.99884 * 0.02562 * 4 3 2 6 6 C 1.38220 * 120.00046 * 359.94758 * 5 4 3 7 7 C 1.38208 * 120.00408 * 179.97438 * 2 1 3 8 8 C 1.50701 * 119.99804 * 0.02562 * 7 2 1 9 9 C 1.52999 * 109.47402 * 85.02067 * 8 7 2 10 10 C 1.50701 * 109.47402 * 180.02562 * 9 8 7 11 11 O 1.21281 * 119.99514 * 359.97438 * 10 9 8 12 12 N 1.34770 * 119.99827 * 180.02562 * 10 9 8 13 13 C 1.46499 * 119.99562 * 180.02562 * 12 10 9 14 14 C 1.53008 * 109.47014 * 179.97438 * 13 12 10 15 15 C 1.53005 * 109.47181 * 179.97438 * 14 13 12 16 16 N 1.46894 * 109.47259 * 179.97438 * 15 14 13 17 17 C 1.46892 * 111.00269 * 180.02562 * 16 15 14 18 18 C 1.50699 * 109.47566 * 180.02562 * 17 16 15 19 19 O 1.21299 * 119.99609 * 359.97438 * 18 17 16 20 20 N 1.34778 * 120.00499 * 180.02562 * 18 17 16 21 21 C 1.37096 * 119.99975 * 180.02562 * 20 18 17 22 22 H 1.08000 * 119.99980 * 359.97438 * 21 20 18 23 23 C 1.38951 * 119.99554 * 180.02562 * 21 20 18 24 24 N 1.31412 * 120.00126 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99896 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46906 * 59.99823 * 25 23 21 27 27 H 1.48498 * 109.47305 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.47130 * 300.00174 * 25 23 21 29 29 H 1.08997 * 109.47001 * 270.01980 * 1 2 3 30 30 H 1.08997 * 109.47350 * 30.02356 * 1 2 3 31 31 H 1.08998 * 109.46705 * 150.02574 * 1 2 3 32 32 H 1.08000 * 119.99741 * 359.97438 * 3 2 1 33 33 H 1.08005 * 120.00151 * 179.97438 * 4 3 2 34 34 H 1.08002 * 120.00347 * 179.97438 * 5 4 3 35 35 H 1.08000 * 119.99660 * 180.32192 * 6 5 4 36 36 H 1.09003 * 109.47025 * 205.01748 * 8 7 2 37 37 H 1.08991 * 109.47184 * 325.01693 * 8 7 2 38 38 H 1.08997 * 109.46738 * 300.00295 * 9 8 7 39 39 H 1.08999 * 109.46965 * 59.99689 * 9 8 7 40 40 H 0.96994 * 120.00421 * 359.97438 * 12 10 9 41 41 H 1.08997 * 109.47516 * 299.99653 * 13 12 10 42 42 H 1.08999 * 109.47480 * 59.99839 * 13 12 10 43 43 H 1.09003 * 109.46800 * 299.99741 * 14 13 12 44 44 H 1.08991 * 109.47349 * 59.99649 * 14 13 12 45 45 H 1.08999 * 109.46630 * 300.00220 * 15 14 13 46 46 H 1.09006 * 109.46786 * 59.99594 * 15 14 13 47 47 H 1.00899 * 110.99788 * 56.04098 * 16 15 14 48 48 H 1.08997 * 109.47076 * 300.00010 * 17 16 15 49 49 H 1.08996 * 109.47137 * 59.99954 * 17 16 15 50 50 H 0.97000 * 119.99371 * 359.97438 * 20 18 17 51 51 H 0.97001 * 119.99816 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5803 1.1975 0.0005 5 6 4.2717 0.0002 0.0005 6 6 3.5806 -1.1969 0.0011 7 6 2.1981 -1.1969 0.0005 8 6 1.4446 -2.5020 0.0005 9 6 1.0817 -2.8815 -1.4365 10 6 0.3277 -4.1863 -1.4365 11 8 0.1032 -4.7568 -0.3900 12 7 -0.0961 -4.7196 -2.5993 13 6 -0.8295 -5.9878 -2.5992 14 6 -1.1923 -6.3673 -4.0363 15 6 -1.9578 -7.6921 -4.0363 16 7 -2.3066 -8.0562 -5.4159 17 6 -3.0448 -9.3256 -5.4549 18 6 -3.3840 -9.6659 -6.8832 19 8 -3.0446 -8.9236 -7.7805 20 7 -4.0653 -10.7945 -7.1636 21 6 -4.3734 -11.1043 -8.4631 22 1 -4.0705 -10.4437 -9.2621 23 6 -5.0763 -12.2676 -8.7520 24 7 -5.4453 -13.0710 -7.7797 25 14 -5.4968 -12.6894 -10.5226 26 1 -4.2451 -12.8214 -11.3106 27 1 -6.2435 -13.9723 -10.5619 28 1 -6.3355 -11.6099 -11.1028 29 1 -0.3633 0.0004 1.0276 30 1 -0.3634 0.8897 -0.5142 31 1 -0.3633 -0.8902 -0.5134 32 1 1.6582 2.1327 -0.0004 33 1 4.1203 2.1329 0.0001 34 1 5.3517 0.0002 0.0005 35 1 4.1207 -2.1321 0.0064 36 1 2.0693 -3.2822 0.4356 37 1 0.5336 -2.3956 0.5893 38 1 0.4571 -2.1013 -1.8716 39 1 1.9929 -2.9879 -2.0253 40 1 0.0838 -4.2636 -3.4362 41 1 -0.2058 -6.7683 -2.1634 42 1 -1.7409 -5.8804 -2.0110 43 1 -1.8163 -5.5868 -4.4717 44 1 -0.2812 -6.4746 -4.6248 45 1 -1.3335 -8.4724 -3.6009 46 1 -2.8690 -7.5852 -3.4476 47 1 -1.4835 -8.0981 -5.9980 48 1 -2.4282 -10.1175 -5.0297 49 1 -3.9632 -9.2297 -4.8759 50 1 -4.3370 -11.3879 -6.4460 51 1 -5.9356 -13.8832 -7.9815 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167293233.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:09 Heat of formation + Delta-G solvation = -96.270842 kcal Electronic energy + Delta-G solvation = -27780.540008 eV Core-core repulsion = 23677.518611 eV Total energy + Delta-G solvation = -4103.021397 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.00153 -40.22271 -40.12764 -37.66587 -36.12709 -35.63626 -35.15724 -33.34497 -33.28210 -32.46851 -30.71675 -28.61747 -27.83630 -26.64453 -25.49379 -24.10635 -22.81691 -22.57300 -21.56653 -21.14793 -20.94581 -19.90024 -18.15805 -17.83181 -17.32175 -17.12192 -17.03048 -16.84936 -16.54956 -16.27483 -15.97201 -15.74924 -15.60778 -15.18436 -15.09640 -14.74084 -14.46016 -14.41966 -13.99369 -13.95954 -13.70161 -13.53448 -13.35002 -13.27721 -13.16595 -12.99875 -12.84653 -12.73134 -12.56660 -12.42641 -12.41861 -12.19411 -12.11794 -11.84204 -11.74089 -11.68512 -11.49832 -10.92746 -10.35325 -10.08827 -10.01821 -9.67871 -9.44276 -9.33591 -8.46483 -5.95582 0.44960 0.50867 1.40379 1.42392 1.53374 1.64669 2.05058 2.17642 2.30484 2.86608 2.96093 3.20901 3.52847 3.67224 3.91382 4.00913 4.02677 4.06293 4.12053 4.16316 4.17527 4.27799 4.32563 4.37098 4.48575 4.50621 4.56897 4.59118 4.62748 4.64038 4.71316 4.79704 4.80456 4.84221 4.98358 5.00775 5.09175 5.16936 5.21798 5.25662 5.37436 5.40771 5.47103 5.62968 5.65834 5.78649 5.88389 6.09665 6.16552 6.41166 6.56344 6.59991 7.12306 7.26238 7.56020 8.11082 8.70685 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.033968 B = 0.001107 C = 0.001098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.118700 B =25292.952772 C =25500.718646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.093 4.093 3 C -0.130 4.130 4 C -0.128 4.128 5 C -0.133 4.133 6 C -0.124 4.124 7 C -0.094 4.094 8 C -0.060 4.060 9 C -0.126 4.126 10 C 0.509 3.491 11 O -0.586 6.586 12 N -0.721 5.721 13 C 0.126 3.874 14 C -0.115 4.115 15 C 0.062 3.938 16 N -0.683 5.683 17 C 0.064 3.936 18 C 0.436 3.564 19 O -0.623 6.623 20 N -0.572 5.572 21 C -0.337 4.337 22 H 0.080 0.920 23 C -0.011 4.011 24 N -0.921 5.921 25 Si 0.993 3.007 26 H -0.271 1.271 27 H -0.270 1.270 28 H -0.272 1.272 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.135 0.865 33 H 0.138 0.862 34 H 0.136 0.864 35 H 0.130 0.870 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.416 0.584 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.079 0.921 44 H 0.077 0.923 45 H 0.040 0.960 46 H 0.078 0.922 47 H 0.345 0.655 48 H 0.067 0.933 49 H 0.103 0.897 50 H 0.396 0.604 51 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.972 25.997 18.323 36.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.093 4.093 3 C -0.148 4.148 4 C -0.146 4.146 5 C -0.151 4.151 6 C -0.142 4.142 7 C -0.094 4.094 8 C -0.098 4.098 9 C -0.166 4.166 10 C 0.297 3.703 11 O -0.467 6.467 12 N -0.373 5.373 13 C 0.001 3.999 14 C -0.153 4.153 15 C -0.067 4.067 16 N -0.316 5.316 17 C -0.068 4.068 18 C 0.224 3.776 19 O -0.510 6.510 20 N -0.210 5.210 21 C -0.467 4.467 22 H 0.098 0.902 23 C -0.211 4.211 24 N -0.561 5.561 25 Si 0.816 3.184 26 H -0.196 1.196 27 H -0.195 1.195 28 H -0.197 1.197 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.153 0.847 33 H 0.155 0.845 34 H 0.154 0.846 35 H 0.148 0.852 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.131 0.869 39 H 0.131 0.869 40 H 0.253 0.747 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.098 0.902 44 H 0.096 0.904 45 H 0.059 0.941 46 H 0.096 0.904 47 H 0.164 0.836 48 H 0.084 0.916 49 H 0.121 0.879 50 H 0.230 0.770 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 16.343 26.263 18.451 36.018 hybrid contribution 0.309 -1.278 -0.598 1.445 sum 16.652 24.985 17.853 34.932 Atomic orbital electron populations 1.20909 0.90480 1.03486 1.02790 1.20027 0.96797 0.92739 0.99692 1.21309 0.94717 0.97969 1.00822 1.21435 0.94509 0.98882 0.99791 1.21401 1.00857 0.92440 1.00421 1.21287 0.93667 0.98976 1.00294 1.19797 0.93920 0.94394 1.01245 1.20221 1.00134 0.93604 0.95825 1.21658 1.01988 0.93773 0.99175 1.21195 0.78671 0.87379 0.83048 1.90704 1.58710 1.64242 1.33017 1.45977 1.57291 1.24311 1.09724 1.21171 0.96144 0.85524 0.97015 1.21586 1.00992 0.97526 0.95207 1.21914 0.99802 0.96367 0.88622 1.60044 1.29109 1.31499 1.10907 1.21531 1.00615 0.92046 0.92631 1.20895 0.82522 0.82225 0.91976 1.90485 1.58909 1.51856 1.49755 1.41930 1.49717 1.20772 1.08542 1.19659 1.34895 1.06827 0.85285 0.90239 1.26038 0.96162 0.95154 1.03757 1.69668 1.39110 1.13575 1.33780 0.84993 0.78527 0.77754 0.77097 1.19614 1.19493 1.19696 0.91033 0.90382 0.91178 0.84707 0.84456 0.84582 0.85236 0.91348 0.91072 0.86909 0.86866 0.74710 0.92135 0.92082 0.90246 0.90439 0.94134 0.90368 0.83599 0.91563 0.87855 0.76970 0.91271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.19 9.22 71.23 0.66 -0.54 16 2 C -0.09 -1.18 5.88 -19.87 -0.12 -1.30 16 3 C -0.13 -1.51 9.70 22.27 0.22 -1.29 16 4 C -0.13 -1.40 10.05 22.27 0.22 -1.17 16 5 C -0.13 -1.51 10.05 22.27 0.22 -1.28 16 6 C -0.12 -1.58 9.68 22.27 0.22 -1.36 16 7 C -0.09 -1.26 5.13 -19.87 -0.10 -1.37 16 8 C -0.06 -0.84 3.94 29.85 0.12 -0.72 16 9 C -0.13 -1.38 5.49 29.85 0.16 -1.22 16 10 C 0.51 8.83 7.83 87.66 0.69 9.51 16 11 O -0.59 -15.50 15.98 -3.03 -0.05 -15.54 16 12 N -0.72 -9.97 5.56 -463.06 -2.57 -12.54 16 13 C 0.13 2.08 5.67 86.38 0.49 2.57 16 14 C -0.11 -1.89 5.59 30.60 0.17 -1.72 16 15 C 0.06 1.31 5.69 86.31 0.49 1.80 16 16 N -0.68 -20.47 6.12 -517.96 -3.17 -23.65 16 17 C 0.06 2.16 6.17 85.56 0.53 2.69 16 18 C 0.44 20.68 7.82 87.66 0.69 21.36 16 19 O -0.62 -34.35 15.78 -3.09 -0.05 -34.40 16 20 N -0.57 -29.37 5.29 -306.98 -1.62 -30.99 16 21 C -0.34 -19.16 9.68 84.04 0.81 -18.35 16 22 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 23 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 24 N -0.92 -49.65 13.05 21.66 0.28 -49.36 16 25 Si 0.99 42.72 29.55 68.60 2.03 44.74 16 26 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 27 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 28 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 29 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.08 0.58 8.09 -2.39 -0.02 0.56 16 31 H 0.07 0.68 5.43 -2.39 -0.01 0.67 16 32 H 0.14 1.07 8.06 -2.91 -0.02 1.05 16 33 H 0.14 0.92 8.06 -2.91 -0.02 0.89 16 34 H 0.14 1.01 8.06 -2.91 -0.02 0.99 16 35 H 0.13 1.33 8.06 -2.91 -0.02 1.31 16 36 H 0.07 1.10 8.01 -2.39 -0.02 1.08 16 37 H 0.07 1.15 6.94 -2.39 -0.02 1.13 16 38 H 0.11 0.87 6.91 -2.39 -0.02 0.85 16 39 H 0.11 0.86 8.14 -2.39 -0.02 0.85 16 40 H 0.42 3.43 8.47 -92.71 -0.79 2.64 16 41 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 47 H 0.35 10.72 8.43 -89.69 -0.76 9.97 16 48 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 49 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 50 H 0.40 19.30 7.90 -92.71 -0.73 18.57 16 51 H 0.28 14.05 8.31 -92.71 -0.77 13.28 16 Total: -1.00 -74.15 425.03 -0.54 -74.69 By element: Atomic # 1 Polarization: 40.87 SS G_CDS: -1.32 Total: 39.55 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: 5.93 Total: 7.50 kcal Atomic # 7 Polarization: -109.46 SS G_CDS: -7.08 Total: -116.54 kcal Atomic # 8 Polarization: -49.85 SS G_CDS: -0.10 Total: -49.94 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.74 kcal Total: -74.15 -0.54 -74.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167293233.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.580 kcal (2) G-P(sol) polarization free energy of solvation -74.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds