Wall clock time and date at job start Wed Apr 1 2020 04:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86802 * 119.99904 * 2 1 4 4 H 1.48500 * 109.46511 * 239.99922 * 3 2 1 5 5 H 1.48504 * 109.47039 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47007 * 119.99930 * 3 2 1 7 7 C 1.38811 * 120.00034 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00315 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99621 * 0.02562 * 7 2 1 10 10 C 1.46504 * 119.99617 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47054 * 175.59106 * 10 9 7 12 12 C 1.52997 * 115.54970 * 303.89646 * 11 10 9 13 13 C 1.52997 * 109.47373 * 278.03233 * 12 11 10 14 14 N 1.46497 * 109.47095 * 175.02401 * 13 12 11 15 15 C 1.34777 * 120.00174 * 180.02562 * 14 13 12 16 16 O 1.21613 * 119.99787 * 0.02562 * 15 14 13 17 17 C 1.47423 * 120.00248 * 180.02562 * 15 14 13 18 18 C 1.36089 * 126.44729 * 180.02562 * 17 15 14 19 19 O 1.34256 * 106.94714 * 179.97438 * 18 17 15 20 20 C 1.34051 * 108.23031 * 0.02562 * 19 18 17 21 21 C 1.50699 * 125.38151 * 179.97438 * 20 19 18 22 22 C 1.54272 * 110.02951 * 57.18853 * 21 20 19 23 23 C 1.54894 * 104.19177 * 217.10575 * 22 21 20 24 24 C 1.54885 * 102.74897 * 37.94645 * 23 22 21 25 25 C 1.53873 * 110.02957 * 300.02284 * 21 20 19 26 26 N 1.29933 * 109.24103 * 359.97438 * 20 19 18 27 27 C 1.52998 * 117.51797 * 89.59911 * 11 10 9 28 28 C 1.53004 * 117.49826 * 158.22974 * 11 10 9 29 29 H 0.96997 * 120.00143 * 0.02562 * 1 2 3 30 30 H 0.96993 * 120.00675 * 359.97438 * 9 7 2 31 31 H 1.08996 * 109.47202 * 55.58799 * 10 9 7 32 32 H 1.09001 * 109.47319 * 295.59267 * 10 9 7 33 33 H 1.09000 * 109.46984 * 158.03128 * 12 11 10 34 34 H 1.09005 * 109.47166 * 38.03689 * 12 11 10 35 35 H 1.08999 * 109.46932 * 55.02413 * 13 12 11 36 36 H 1.08995 * 109.46976 * 295.02583 * 13 12 11 37 37 H 0.97005 * 120.00478 * 0.02562 * 14 13 12 38 38 H 1.07998 * 126.53005 * 359.71513 * 18 17 15 39 39 H 1.09000 * 110.01694 * 178.63268 * 21 20 19 40 40 H 1.08993 * 110.48675 * 335.78371 * 22 21 20 41 41 H 1.08998 * 110.48506 * 98.42965 * 22 21 20 42 42 H 1.08996 * 110.75249 * 279.62633 * 23 22 21 43 43 H 1.09000 * 110.90728 * 156.33209 * 23 22 21 44 44 H 1.09004 * 110.48520 * 203.37992 * 24 23 22 45 45 H 1.08993 * 110.60225 * 80.79209 * 24 23 22 46 46 H 1.08999 * 110.02978 * 238.56317 * 25 21 20 47 47 H 1.08998 * 110.03409 * 0.02562 * 25 21 20 48 48 H 1.09001 * 117.50000 * 214.96729 * 27 11 10 49 49 H 1.09004 * 117.50386 * 359.97438 * 27 11 10 50 50 H 1.09006 * 117.49912 * 359.97291 * 28 11 10 51 51 H 1.08999 * 117.49694 * 144.99788 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0676 -4.8176 0.1114 12 6 0.1322 -4.7735 1.3213 13 6 0.8592 -5.3270 2.5485 14 7 0.0070 -5.1755 3.7305 15 6 0.4435 -5.5958 4.9343 16 8 1.5450 -6.1004 5.0395 17 6 -0.4142 -5.4440 6.1237 18 6 -0.1073 -5.8196 7.3952 19 8 -1.1616 -5.5008 8.1627 20 6 -2.0961 -4.9423 7.3806 21 6 -3.4384 -4.4407 7.8471 22 6 -3.2515 -3.3816 8.9532 23 6 -4.4190 -3.6483 9.9355 24 6 -4.5172 -5.1941 9.9382 25 6 -4.2431 -5.5931 8.4733 26 7 -1.6618 -4.9017 6.1567 27 6 0.5124 -5.3999 -1.1899 28 6 1.5336 -6.1925 -0.3715 29 1 -0.4850 0.8400 -0.0004 30 1 0.3557 -2.3881 0.0005 31 1 2.7427 -3.6811 0.8483 32 1 2.6242 -3.7495 -0.9263 33 1 -0.7518 -5.3783 1.1193 34 1 -0.1683 -3.7430 1.5110 35 1 1.7889 -4.7781 2.6982 36 1 1.0814 -6.3827 2.3937 37 1 -0.8715 -4.7727 3.6467 38 1 0.8083 -6.2890 7.7235 39 1 -3.9889 -4.0132 7.0090 40 1 -2.2930 -3.5180 9.4538 41 1 -3.3257 -2.3773 8.5362 42 1 -5.3432 -3.2031 9.5671 43 1 -4.1823 -3.2746 10.9317 44 1 -5.5151 -5.5124 10.2399 45 1 -3.7644 -5.6251 10.5982 46 1 -5.1845 -5.7242 7.9397 47 1 -3.6626 -6.5150 8.4402 48 1 -0.5193 -5.7516 -1.1841 49 1 0.8524 -4.9557 -2.1255 50 1 2.5458 -6.2701 -0.7687 51 1 1.1737 -7.0657 0.1727 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167566130.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:22 Heat of formation + Delta-G solvation = 1.546536 kcal Electronic energy + Delta-G solvation = -29758.384505 eV Core-core repulsion = 25659.604787 eV Total energy + Delta-G solvation = -4098.779717 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.68952 -39.53685 -38.49973 -38.18866 -35.10512 -34.73770 -33.90001 -31.66898 -30.76504 -29.91833 -29.20750 -28.40683 -26.00298 -24.75681 -22.95628 -22.73330 -22.62164 -21.77227 -21.17776 -20.90076 -19.99444 -18.65860 -17.92131 -17.10656 -17.01428 -16.76978 -16.12220 -15.96761 -15.65322 -15.46502 -14.98144 -14.39016 -14.24636 -14.21520 -14.11841 -13.82469 -13.52884 -13.33851 -13.04297 -12.66323 -12.30209 -12.27179 -12.01752 -11.83893 -11.61480 -11.54406 -11.47874 -11.33773 -11.19891 -11.10055 -11.05262 -11.02995 -10.90938 -10.80039 -10.60376 -10.21398 -10.08828 -9.89615 -9.61451 -9.29857 -9.26121 -8.91486 -8.80173 -6.86806 -5.72797 -3.00559 0.92146 1.81187 2.29711 3.08586 3.26944 3.46741 3.50761 3.51840 3.55203 4.07465 4.08897 4.10890 4.41098 4.63740 4.64060 4.68219 4.92492 4.97610 5.00585 5.05991 5.07609 5.12929 5.18881 5.19328 5.30280 5.36634 5.38787 5.44665 5.46149 5.56326 5.60506 5.64048 5.69909 5.72509 5.76500 5.79464 5.86268 5.89076 5.93734 6.19798 6.22496 6.23504 6.45750 6.48200 6.49535 6.65222 6.79951 6.87016 7.21992 7.59728 7.73323 8.17616 8.46447 9.57802 10.16195 10.51849 11.50046 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009228 B = 0.002308 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3033.481850 B =12128.691038 C =13996.396427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.237 4.237 8 H 0.069 0.931 9 N -0.727 5.727 10 C 0.188 3.812 11 C -0.118 4.118 12 C -0.092 4.092 13 C 0.125 3.875 14 N -0.706 5.706 15 C 0.599 3.401 16 O -0.541 6.541 17 C -0.067 4.067 18 C 0.007 3.993 19 O -0.194 6.194 20 C 0.206 3.794 21 C 0.002 3.998 22 C -0.121 4.121 23 C -0.124 4.124 24 C -0.125 4.125 25 C -0.120 4.120 26 N -0.458 5.458 27 C -0.166 4.166 28 C -0.178 4.178 29 H 0.255 0.745 30 H 0.385 0.615 31 H 0.026 0.974 32 H 0.018 0.982 33 H 0.062 0.938 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.410 0.590 38 H 0.231 0.769 39 H 0.119 0.881 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.068 0.932 46 H 0.079 0.921 47 H 0.069 0.931 48 H 0.088 0.912 49 H 0.095 0.905 50 H 0.092 0.908 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.910 -14.911 18.712 25.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.369 4.369 8 H 0.087 0.913 9 N -0.372 5.372 10 C 0.060 3.940 11 C -0.119 4.119 12 C -0.130 4.130 13 C 0.003 3.997 14 N -0.356 5.356 15 C 0.384 3.616 16 O -0.419 6.419 17 C -0.187 4.187 18 C -0.066 4.066 19 O -0.080 6.080 20 C -0.003 4.003 21 C -0.017 4.017 22 C -0.159 4.159 23 C -0.161 4.161 24 C -0.162 4.162 25 C -0.158 4.158 26 N -0.187 5.187 27 C -0.203 4.203 28 C -0.215 4.215 29 H 0.065 0.935 30 H 0.219 0.781 31 H 0.044 0.956 32 H 0.035 0.965 33 H 0.081 0.919 34 H 0.109 0.891 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.245 0.755 38 H 0.247 0.753 39 H 0.137 0.863 40 H 0.092 0.908 41 H 0.098 0.902 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.087 0.913 46 H 0.097 0.903 47 H 0.088 0.912 48 H 0.107 0.893 49 H 0.113 0.887 50 H 0.111 0.889 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.320 -14.895 18.237 25.324 hybrid contribution 0.307 0.863 0.327 0.972 sum -9.013 -14.032 18.564 24.955 Atomic orbital electron populations 1.69650 1.05036 1.25653 1.57901 1.24714 0.95518 0.97579 1.03166 0.86281 0.78528 0.83648 0.77827 1.21327 1.21718 1.21329 1.19187 0.90989 0.84191 1.42507 0.91329 1.42300 1.05889 0.99650 1.89333 1.20179 0.91885 0.84207 0.97725 1.21563 1.00877 0.94878 0.94582 1.21266 0.96728 1.03130 0.91895 1.21422 0.94240 1.01027 0.83055 1.45846 1.21244 1.61270 1.07211 1.16717 0.84735 0.78390 0.81730 1.90819 1.20185 1.45319 1.85555 1.21853 0.93907 1.07359 0.95611 1.25282 0.91629 1.00479 0.89248 1.84356 1.23379 1.59894 1.40363 1.26205 0.93475 0.96826 0.83805 1.20512 0.84878 0.96237 1.00095 1.22506 0.99846 0.98326 0.95272 1.22501 0.98321 0.95859 0.99423 1.22386 1.01949 0.95946 0.95956 1.22254 1.00069 0.97226 0.96241 1.70810 1.09239 1.18330 1.20325 1.22995 0.98243 1.03464 0.95611 1.22968 0.99655 0.94484 1.04431 0.93545 0.78119 0.95649 0.96452 0.91911 0.89091 0.90661 0.91580 0.75470 0.75311 0.86296 0.90796 0.90229 0.90876 0.90973 0.91132 0.91313 0.90262 0.91237 0.89307 0.88686 0.88928 0.89216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.34 13.06 55.49 0.72 -27.61 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.77 29.55 -169.99 -5.02 17.75 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 7 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.73 -18.50 5.23 -59.91 -0.31 -18.82 16 10 C 0.19 3.87 6.15 -4.04 -0.02 3.85 16 11 C -0.12 -1.94 1.65 -154.51 -0.25 -2.19 16 12 C -0.09 -1.44 5.20 -26.73 -0.14 -1.58 16 13 C 0.13 1.92 5.49 -4.05 -0.02 1.90 16 14 N -0.71 -10.54 5.55 -61.39 -0.34 -10.88 16 15 C 0.60 9.40 7.81 -12.52 -0.10 9.30 16 16 O -0.54 -9.68 16.89 5.27 0.09 -9.59 16 17 C -0.07 -0.92 6.99 -83.02 -0.58 -1.50 16 18 C 0.01 0.08 11.95 29.96 0.36 0.44 16 19 O -0.19 -2.02 10.55 6.51 0.07 -1.95 16 20 C 0.21 2.21 6.50 -13.08 -0.09 2.13 16 21 C 0.00 0.02 3.44 -90.65 -0.31 -0.30 16 22 C -0.12 -0.80 6.35 -25.07 -0.16 -0.96 16 23 C -0.12 -0.61 6.91 -24.74 -0.17 -0.78 16 24 C -0.12 -0.62 6.83 -25.07 -0.17 -0.79 16 25 C -0.12 -0.72 6.45 -25.61 -0.17 -0.89 16 26 N -0.46 -6.02 11.06 -7.65 -0.08 -6.11 16 27 C -0.17 -2.46 9.87 -26.73 -0.26 -2.72 16 28 C -0.18 -2.42 9.58 -26.73 -0.26 -2.67 16 29 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 30 H 0.38 10.22 6.80 -40.82 -0.28 9.94 16 31 H 0.03 0.54 7.96 -51.93 -0.41 0.13 16 32 H 0.02 0.37 8.10 -51.93 -0.42 -0.05 16 33 H 0.06 0.86 7.93 -51.93 -0.41 0.45 16 34 H 0.09 1.68 6.94 -51.93 -0.36 1.32 16 35 H 0.08 1.31 7.96 -51.93 -0.41 0.90 16 36 H 0.07 0.96 7.72 -51.93 -0.40 0.56 16 37 H 0.41 5.75 8.20 -40.82 -0.33 5.42 16 38 H 0.23 1.80 8.06 -52.49 -0.42 1.38 16 39 H 0.12 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.07 0.54 7.71 -51.93 -0.40 0.14 16 41 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 45 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 46 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.07 0.48 7.67 -51.93 -0.40 0.08 16 48 H 0.09 1.19 8.07 -51.93 -0.42 0.77 16 49 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 50 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 51 H 0.09 1.09 7.90 -51.93 -0.41 0.68 16 LS Contribution 420.29 15.07 6.33 6.33 Total: -1.00 -33.52 420.29 -9.57 -43.09 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: -8.43 Total: 11.96 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: -2.59 Total: -4.17 kcal Atomic # 7 Polarization: -63.40 SS G_CDS: -0.01 Total: -63.42 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.16 Total: -11.54 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -33.52 -9.57 -43.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167566130.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.633 kcal (2) G-P(sol) polarization free energy of solvation -33.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds