Wall clock time and date at job start Wed Apr 1 2020 04:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86802 * 119.99904 * 2 1 4 4 H 1.48500 * 109.46511 * 239.99922 * 3 2 1 5 5 H 1.48504 * 109.47039 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47007 * 119.99930 * 3 2 1 7 7 C 1.38811 * 120.00034 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00315 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99621 * 0.02562 * 7 2 1 10 10 C 1.46504 * 119.99617 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47054 * 175.59106 * 10 9 7 12 12 C 1.52997 * 115.54970 * 303.89646 * 11 10 9 13 13 C 1.52997 * 109.47373 * 278.03233 * 12 11 10 14 14 N 1.46497 * 109.47095 * 175.02401 * 13 12 11 15 15 C 1.34777 * 120.00174 * 180.02562 * 14 13 12 16 16 O 1.21613 * 119.99787 * 0.02562 * 15 14 13 17 17 C 1.47423 * 120.00248 * 180.02562 * 15 14 13 18 18 C 1.36089 * 126.44729 * 180.02562 * 17 15 14 19 19 O 1.34256 * 106.94714 * 179.97438 * 18 17 15 20 20 C 1.34051 * 108.23031 * 0.02562 * 19 18 17 21 21 C 1.50699 * 125.38151 * 179.97438 * 20 19 18 22 22 C 1.54272 * 110.02951 * 57.18853 * 21 20 19 23 23 C 1.54894 * 104.19177 * 217.10575 * 22 21 20 24 24 C 1.54885 * 102.74897 * 37.94645 * 23 22 21 25 25 C 1.53873 * 110.02957 * 300.02284 * 21 20 19 26 26 N 1.29933 * 109.24103 * 359.97438 * 20 19 18 27 27 C 1.52998 * 117.51797 * 89.59911 * 11 10 9 28 28 C 1.53004 * 117.49826 * 158.22974 * 11 10 9 29 29 H 0.96997 * 120.00143 * 0.02562 * 1 2 3 30 30 H 0.96993 * 120.00675 * 359.97438 * 9 7 2 31 31 H 1.08996 * 109.47202 * 55.58799 * 10 9 7 32 32 H 1.09001 * 109.47319 * 295.59267 * 10 9 7 33 33 H 1.09000 * 109.46984 * 158.03128 * 12 11 10 34 34 H 1.09005 * 109.47166 * 38.03689 * 12 11 10 35 35 H 1.08999 * 109.46932 * 55.02413 * 13 12 11 36 36 H 1.08995 * 109.46976 * 295.02583 * 13 12 11 37 37 H 0.97005 * 120.00478 * 0.02562 * 14 13 12 38 38 H 1.07998 * 126.53005 * 359.71513 * 18 17 15 39 39 H 1.09000 * 110.01694 * 178.63268 * 21 20 19 40 40 H 1.08993 * 110.48675 * 335.78371 * 22 21 20 41 41 H 1.08998 * 110.48506 * 98.42965 * 22 21 20 42 42 H 1.08996 * 110.75249 * 279.62633 * 23 22 21 43 43 H 1.09000 * 110.90728 * 156.33209 * 23 22 21 44 44 H 1.09004 * 110.48520 * 203.37992 * 24 23 22 45 45 H 1.08993 * 110.60225 * 80.79209 * 24 23 22 46 46 H 1.08999 * 110.02978 * 238.56317 * 25 21 20 47 47 H 1.08998 * 110.03409 * 0.02562 * 25 21 20 48 48 H 1.09001 * 117.50000 * 214.96729 * 27 11 10 49 49 H 1.09004 * 117.50386 * 359.97438 * 27 11 10 50 50 H 1.09006 * 117.49912 * 359.97291 * 28 11 10 51 51 H 1.08999 * 117.49694 * 144.99788 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0676 -4.8176 0.1114 12 6 0.1322 -4.7735 1.3213 13 6 0.8592 -5.3270 2.5485 14 7 0.0070 -5.1755 3.7305 15 6 0.4435 -5.5958 4.9343 16 8 1.5450 -6.1004 5.0395 17 6 -0.4142 -5.4440 6.1237 18 6 -0.1073 -5.8196 7.3952 19 8 -1.1616 -5.5008 8.1627 20 6 -2.0961 -4.9423 7.3806 21 6 -3.4384 -4.4407 7.8471 22 6 -3.2515 -3.3816 8.9532 23 6 -4.4190 -3.6483 9.9355 24 6 -4.5172 -5.1941 9.9382 25 6 -4.2431 -5.5931 8.4733 26 7 -1.6618 -4.9017 6.1567 27 6 0.5124 -5.3999 -1.1899 28 6 1.5336 -6.1925 -0.3715 29 1 -0.4850 0.8400 -0.0004 30 1 0.3557 -2.3881 0.0005 31 1 2.7427 -3.6811 0.8483 32 1 2.6242 -3.7495 -0.9263 33 1 -0.7518 -5.3783 1.1193 34 1 -0.1683 -3.7430 1.5110 35 1 1.7889 -4.7781 2.6982 36 1 1.0814 -6.3827 2.3937 37 1 -0.8715 -4.7727 3.6467 38 1 0.8083 -6.2890 7.7235 39 1 -3.9889 -4.0132 7.0090 40 1 -2.2930 -3.5180 9.4538 41 1 -3.3257 -2.3773 8.5362 42 1 -5.3432 -3.2031 9.5671 43 1 -4.1823 -3.2746 10.9317 44 1 -5.5151 -5.5124 10.2399 45 1 -3.7644 -5.6251 10.5982 46 1 -5.1845 -5.7242 7.9397 47 1 -3.6626 -6.5150 8.4402 48 1 -0.5193 -5.7516 -1.1841 49 1 0.8524 -4.9557 -2.1255 50 1 2.5458 -6.2701 -0.7687 51 1 1.1737 -7.0657 0.1727 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167566130.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:21 Heat of formation + Delta-G solvation = -21.271205 kcal Electronic energy + Delta-G solvation = -29759.373956 eV Core-core repulsion = 25659.604787 eV Total energy + Delta-G solvation = -4099.769169 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.58040 -40.76390 -39.53546 -38.99124 -36.21378 -35.98505 -35.72497 -32.80022 -32.45466 -31.13427 -29.67242 -29.12087 -27.84725 -25.92402 -24.62714 -24.05562 -23.48400 -22.93718 -22.00723 -21.54105 -20.89500 -19.95881 -19.17700 -18.84567 -17.92827 -17.68699 -17.15842 -16.89032 -16.68957 -16.58085 -16.29393 -16.08270 -15.61130 -15.28488 -15.06165 -14.83028 -14.74910 -14.49894 -14.28619 -14.20470 -13.92762 -13.19284 -13.03661 -12.91725 -12.77303 -12.63450 -12.55817 -12.28922 -12.27556 -12.16111 -12.04121 -11.98889 -11.95919 -11.93865 -11.88300 -11.71448 -11.44521 -11.41367 -11.09557 -10.92371 -10.55879 -10.31706 -10.01020 -8.97789 -7.95043 -5.22758 -0.01240 0.85476 1.44853 1.46932 1.47893 1.53890 1.97419 2.13932 2.53771 2.69286 2.88933 3.37722 3.54356 3.56068 3.61870 3.77778 3.81371 3.83633 3.96126 4.03343 4.06115 4.23921 4.37445 4.42415 4.43500 4.45118 4.46427 4.51120 4.52258 4.59149 4.71622 4.78236 4.83749 4.89739 4.92275 4.93755 4.96993 5.06440 5.07212 5.15490 5.22740 5.24073 5.26980 5.30607 5.32724 5.33518 5.36345 5.47954 5.48351 6.21091 6.27214 6.50472 6.97442 7.34099 8.10530 8.36026 9.28067 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009228 B = 0.002308 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3033.481850 B =12128.691038 C =13996.396427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.073 4.073 3 Si 0.971 3.029 4 H -0.278 1.278 5 H -0.293 1.293 6 H -0.281 1.281 7 C -0.247 4.247 8 H 0.070 0.930 9 N -0.736 5.736 10 C 0.188 3.812 11 C -0.141 4.141 12 C -0.078 4.078 13 C 0.134 3.866 14 N -0.704 5.704 15 C 0.598 3.402 16 O -0.569 6.569 17 C -0.101 4.101 18 C 0.028 3.972 19 O -0.189 6.189 20 C 0.212 3.788 21 C -0.001 4.001 22 C -0.121 4.121 23 C -0.119 4.119 24 C -0.122 4.122 25 C -0.116 4.116 26 N -0.485 5.485 27 C -0.163 4.163 28 C -0.149 4.149 29 H 0.251 0.749 30 H 0.376 0.624 31 H 0.016 0.984 32 H 0.017 0.983 33 H 0.087 0.913 34 H 0.056 0.944 35 H 0.048 0.952 36 H 0.081 0.919 37 H 0.413 0.587 38 H 0.259 0.741 39 H 0.121 0.879 40 H 0.065 0.935 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.079 0.921 44 H 0.084 0.916 45 H 0.066 0.934 46 H 0.091 0.909 47 H 0.060 0.940 48 H 0.107 0.893 49 H 0.084 0.916 50 H 0.099 0.901 51 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.495 -16.050 19.691 27.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.265 4.265 3 Si 0.800 3.200 4 H -0.204 1.204 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.379 4.379 8 H 0.088 0.912 9 N -0.379 5.379 10 C 0.061 3.939 11 C -0.142 4.142 12 C -0.116 4.116 13 C 0.011 3.989 14 N -0.354 5.354 15 C 0.384 3.616 16 O -0.450 6.450 17 C -0.220 4.220 18 C -0.046 4.046 19 O -0.075 6.075 20 C 0.002 3.998 21 C -0.020 4.020 22 C -0.160 4.160 23 C -0.156 4.156 24 C -0.159 4.159 25 C -0.155 4.155 26 N -0.214 5.214 27 C -0.200 4.200 28 C -0.186 4.186 29 H 0.060 0.940 30 H 0.209 0.791 31 H 0.034 0.966 32 H 0.034 0.966 33 H 0.106 0.894 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.099 0.901 37 H 0.249 0.751 38 H 0.274 0.726 39 H 0.139 0.861 40 H 0.083 0.917 41 H 0.097 0.903 42 H 0.100 0.900 43 H 0.098 0.902 44 H 0.103 0.897 45 H 0.084 0.916 46 H 0.109 0.891 47 H 0.079 0.921 48 H 0.125 0.875 49 H 0.103 0.897 50 H 0.118 0.882 51 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -9.891 -16.055 19.203 26.914 hybrid contribution 0.509 1.177 0.045 1.283 sum -9.381 -14.878 19.249 26.074 Atomic orbital electron populations 1.69802 1.06399 1.26069 1.59361 1.25514 0.96426 1.00860 1.03728 0.85257 0.77282 0.79434 0.78067 1.20387 1.21862 1.20769 1.19571 0.91350 0.85556 1.41408 0.91164 1.42455 1.05657 1.00657 1.89143 1.20239 0.92622 0.84074 0.96942 1.21381 1.01438 0.95258 0.96138 1.21098 0.97397 1.01455 0.91675 1.21288 0.93136 1.01289 0.83154 1.45844 1.21280 1.61095 1.07178 1.16990 0.84614 0.77695 0.82296 1.90787 1.21366 1.46754 1.86055 1.21705 0.94545 1.09944 0.95822 1.25803 0.92029 0.98421 0.88325 1.84398 1.23279 1.59707 1.40105 1.26852 0.94092 0.95591 0.83244 1.20761 0.83485 0.97160 1.00613 1.22515 1.00261 0.97914 0.95282 1.22499 0.97862 0.95941 0.99291 1.22387 1.02681 0.95846 0.95022 1.22260 1.00083 0.96043 0.97071 1.70768 1.09430 1.19520 1.21714 1.23060 0.99693 1.03125 0.94157 1.23065 0.99825 0.93157 1.02567 0.93989 0.79087 0.96588 0.96565 0.89443 0.92522 0.93401 0.90122 0.75071 0.72574 0.86073 0.91664 0.90316 0.89983 0.90241 0.89744 0.91552 0.89051 0.92120 0.87494 0.89722 0.88231 0.86807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.79 13.06 21.65 0.28 -59.51 16 2 C -0.07 -4.28 5.50 84.86 0.47 -3.81 16 3 Si 0.97 47.29 29.55 68.60 2.03 49.32 16 4 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 5 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 6 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 7 C -0.25 -14.25 9.99 84.03 0.84 -13.41 16 8 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 9 N -0.74 -38.41 5.23 -343.45 -1.80 -40.20 16 10 C 0.19 7.87 6.15 86.38 0.53 8.40 16 11 C -0.14 -4.55 1.65 -52.18 -0.09 -4.64 16 12 C -0.08 -2.43 5.20 30.59 0.16 -2.27 16 13 C 0.13 4.13 5.49 86.38 0.47 4.60 16 14 N -0.70 -21.39 5.55 -466.39 -2.59 -23.98 16 15 C 0.60 18.99 7.81 86.66 0.68 19.66 16 16 O -0.57 -20.55 16.89 -4.07 -0.07 -20.62 16 17 C -0.10 -2.77 6.99 40.41 0.28 -2.48 16 18 C 0.03 0.60 11.95 67.32 0.80 1.40 16 19 O -0.19 -3.76 10.55 0.39 0.00 -3.76 16 20 C 0.21 4.44 6.50 88.39 0.57 5.02 16 21 C 0.00 -0.01 3.44 -10.81 -0.04 -0.05 16 22 C -0.12 -1.48 6.35 31.67 0.20 -1.28 16 23 C -0.12 -0.95 6.91 31.89 0.22 -0.73 16 24 C -0.12 -0.97 6.83 31.67 0.22 -0.75 16 25 C -0.12 -1.23 6.45 31.32 0.20 -1.02 16 26 N -0.48 -12.82 11.06 -293.04 -3.24 -16.06 16 27 C -0.16 -4.55 9.87 30.60 0.30 -4.25 16 28 C -0.15 -3.67 9.58 30.60 0.29 -3.38 16 29 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 30 H 0.38 20.65 6.80 -92.71 -0.63 20.02 16 31 H 0.02 0.70 7.96 -2.39 -0.02 0.68 16 32 H 0.02 0.69 8.10 -2.39 -0.02 0.67 16 33 H 0.09 2.26 7.93 -2.39 -0.02 2.24 16 34 H 0.06 2.16 6.94 -2.38 -0.02 2.14 16 35 H 0.05 1.73 7.96 -2.39 -0.02 1.71 16 36 H 0.08 2.24 7.72 -2.39 -0.02 2.22 16 37 H 0.41 11.90 8.20 -92.70 -0.76 11.14 16 38 H 0.26 3.63 8.06 -2.91 -0.02 3.60 16 39 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.06 0.91 7.71 -2.39 -0.02 0.89 16 41 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 43 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 45 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 46 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.06 0.76 7.67 -2.39 -0.02 0.74 16 48 H 0.11 2.60 8.07 -2.39 -0.02 2.58 16 49 H 0.08 2.54 8.14 -2.38 -0.02 2.52 16 50 H 0.10 2.35 8.14 -2.38 -0.02 2.33 16 51 H 0.11 2.32 7.90 -2.39 -0.02 2.31 16 Total: -1.00 -73.17 420.29 0.29 -72.87 By element: Atomic # 1 Polarization: 41.38 SS G_CDS: -0.45 Total: 40.93 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: 6.12 Total: 1.00 kcal Atomic # 7 Polarization: -132.41 SS G_CDS: -7.34 Total: -139.75 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: -0.06 Total: -24.38 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 2.03 Total: 49.32 kcal Total: -73.17 0.29 -72.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167566130.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.603 kcal (2) G-P(sol) polarization free energy of solvation -73.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds