Wall clock time and date at job start Wed Apr 1 2020 04:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99958 * 2 1 4 4 H 1.48508 * 109.47441 * 239.99964 * 3 2 1 5 5 H 1.48497 * 109.47292 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47222 * 119.99851 * 3 2 1 7 7 C 1.37874 * 120.00182 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00117 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99931 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47120 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46973 * 180.02562 * 10 9 7 12 12 N 1.46509 * 109.47146 * 179.97438 * 11 10 9 13 13 C 1.34776 * 119.99690 * 179.97438 * 12 11 10 14 14 O 1.21525 * 120.00568 * 0.02562 * 13 12 11 15 15 C 1.47950 * 119.99224 * 180.02562 * 13 12 11 16 16 C 1.35706 * 119.49527 * 180.02562 * 15 13 12 17 17 C 1.47144 * 118.42436 * 179.71897 * 16 15 13 18 18 N 1.31990 * 121.16941 * 179.97438 * 17 16 15 19 19 C 1.46496 * 120.00303 * 174.07920 * 18 17 16 20 20 C 1.52999 * 109.47472 * 241.65509 * 19 18 17 21 21 C 1.53183 * 109.54057 * 294.55464 * 20 19 18 22 22 C 1.53087 * 109.16155 * 183.15123 * 21 20 19 23 23 O 1.42907 * 109.41775 * 57.60656 * 22 21 20 24 24 C 1.42896 * 114.09648 * 298.84058 * 23 22 21 25 25 C 1.53095 * 109.41698 * 61.15761 * 24 23 22 26 26 C 1.46803 * 117.66020 * 359.97438 * 17 16 15 27 27 C 1.34765 * 118.76853 * 0.02562 * 26 17 16 28 28 N 1.35759 * 121.46202 * 359.97438 * 27 26 17 29 29 H 0.97000 * 118.66084 * 180.02562 * 28 27 26 30 30 H 0.97000 * 119.99628 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.47246 * 59.99988 * 9 7 2 32 32 H 1.09006 * 109.46916 * 300.00299 * 9 7 2 33 33 H 1.08995 * 109.47495 * 59.99521 * 10 9 7 34 34 H 1.09000 * 109.46833 * 299.99587 * 10 9 7 35 35 H 1.09000 * 109.47417 * 60.00144 * 11 10 9 36 36 H 1.09000 * 109.46897 * 299.99417 * 11 10 9 37 37 H 0.97000 * 119.99579 * 0.02562 * 12 11 10 38 38 H 1.08000 * 120.78809 * 359.69612 * 16 15 13 39 39 H 1.09007 * 109.46802 * 1.65301 * 19 18 17 40 40 H 1.09000 * 109.47809 * 121.65085 * 19 18 17 41 41 H 1.09002 * 109.53880 * 54.81524 * 20 19 18 42 42 H 1.09001 * 109.51734 * 303.05573 * 21 20 19 43 43 H 1.08995 * 109.52205 * 63.24319 * 21 20 19 44 44 H 1.09004 * 109.48063 * 297.62456 * 22 21 20 45 45 H 1.08995 * 109.48016 * 177.59134 * 22 21 20 46 46 H 1.08996 * 109.48784 * 301.17704 * 24 23 22 47 47 H 1.09000 * 109.49177 * 181.14541 * 24 23 22 48 48 H 1.08994 * 109.52881 * 182.48447 * 25 24 23 49 49 H 1.09004 * 109.52210 * 62.29367 * 25 24 23 50 50 H 1.07998 * 120.61487 * 180.02562 * 26 17 16 51 51 H 1.08001 * 119.27328 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9870 -0.0012 12 7 2.4324 -6.1006 -0.0018 13 6 1.9831 -7.3713 -0.0019 14 8 0.7883 -7.5934 -0.0020 15 6 2.9446 -8.4957 -0.0020 16 6 2.4811 -9.7712 -0.0026 17 6 3.4580 -10.8715 -0.0090 18 7 3.0672 -12.1321 -0.0094 19 6 4.0549 -13.2053 -0.1466 20 6 3.7671 -14.0036 -1.4197 21 6 2.4210 -14.7214 -1.2811 22 6 2.1785 -15.5793 -2.5256 23 8 3.2552 -16.5059 -2.6811 24 6 4.5324 -15.8912 -2.8623 25 6 4.8696 -15.0458 -1.6313 26 6 4.8828 -10.5177 -0.0149 27 6 5.2276 -9.2149 -0.0137 28 7 4.2895 -8.2336 -0.0076 29 1 4.5832 -7.3092 -0.0074 30 1 -0.4849 0.8401 -0.0004 31 1 0.6241 -2.5567 -0.8903 32 1 0.6247 -2.5570 0.8897 33 1 2.8721 -3.6043 0.8893 34 1 2.8719 -3.6043 -0.8906 35 1 0.8540 -5.0446 -0.8914 36 1 0.8535 -5.0450 0.8886 37 1 3.3861 -5.9233 -0.0014 38 1 1.4203 -9.9739 0.0019 39 1 5.0541 -12.7739 -0.2064 40 1 3.9958 -13.8664 0.7179 41 1 3.7352 -13.3279 -2.2744 42 1 2.4374 -15.3587 -0.3969 43 1 1.6235 -13.9847 -1.1854 44 1 2.1219 -14.9370 -3.4045 45 1 1.2420 -16.1257 -2.4136 46 1 4.5067 -15.2530 -3.7455 47 1 5.2918 -16.6621 -2.9930 48 1 5.8231 -14.5409 -1.7861 49 1 4.9354 -15.6896 -0.7542 50 1 5.6405 -11.2872 -0.0201 51 1 6.2735 -8.9454 -0.0184 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198536851.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:39 Heat of formation + Delta-G solvation = -50.545265 kcal Electronic energy + Delta-G solvation = -28745.512089 eV Core-core repulsion = 24644.473502 eV Total energy + Delta-G solvation = -4101.038587 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.89629 -39.72853 -38.97751 -36.57581 -35.76091 -34.20431 -33.45371 -32.18759 -31.42821 -31.29797 -30.39438 -27.50005 -27.02284 -24.67368 -23.90231 -23.32766 -22.96442 -22.04952 -20.93901 -20.41777 -20.01541 -19.32525 -17.35712 -16.88299 -16.48617 -16.44803 -16.29291 -15.77359 -15.75122 -15.57835 -15.11977 -14.87794 -14.69576 -14.62205 -14.53460 -13.95144 -13.89877 -13.80618 -13.45545 -12.89856 -12.64107 -12.43278 -12.38360 -12.06268 -11.97462 -11.91191 -11.65644 -11.63819 -10.99478 -10.96755 -10.89052 -10.81356 -10.72877 -10.55498 -10.35653 -10.01110 -9.99608 -9.82115 -9.55364 -9.23997 -9.17077 -9.11920 -8.45004 -7.51674 -6.09564 -4.13503 0.66498 1.16998 2.54283 2.68372 2.83826 3.25925 3.31662 3.32689 3.41112 3.56627 4.03161 4.24016 4.36906 4.40960 4.43482 4.54569 4.59426 4.71995 4.77675 4.89208 5.01884 5.07677 5.11122 5.22761 5.26285 5.27717 5.32645 5.39657 5.48383 5.54920 5.57084 5.58940 5.63510 5.68587 5.76513 5.92706 5.96796 5.97614 6.08308 6.12429 6.23353 6.41862 6.53917 6.64919 6.73886 6.84139 6.87398 7.31017 7.52966 7.64467 7.86091 7.87524 7.92645 8.28088 8.92623 9.51220 11.01505 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.027971 B = 0.001385 C = 0.001355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.813130 B =20204.837871 C =20653.986659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.526 4.526 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.122 4.122 11 C 0.115 3.885 12 N -0.719 5.719 13 C 0.553 3.447 14 O -0.512 6.512 15 C 0.091 3.909 16 C -0.101 4.101 17 C 0.233 3.767 18 N -0.558 5.558 19 C 0.049 3.951 20 C -0.079 4.079 21 C -0.141 4.141 22 C 0.058 3.942 23 O -0.386 6.386 24 C 0.062 3.938 25 C -0.151 4.151 26 C -0.278 4.278 27 C 0.145 3.855 28 N -0.611 5.611 29 H 0.411 0.589 30 H 0.263 0.737 31 H 0.020 0.980 32 H 0.020 0.980 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.393 0.607 38 H 0.159 0.841 39 H 0.045 0.955 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.085 0.915 44 H 0.048 0.952 45 H 0.093 0.907 46 H 0.048 0.952 47 H 0.092 0.908 48 H 0.071 0.929 49 H 0.072 0.928 50 H 0.143 0.857 51 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.195 -27.595 -2.575 31.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.565 4.565 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.160 4.160 11 C -0.007 4.007 12 N -0.371 5.371 13 C 0.337 3.663 14 O -0.387 6.387 15 C -0.018 4.018 16 C -0.129 4.129 17 C 0.055 3.945 18 N -0.273 5.273 19 C -0.081 4.081 20 C -0.098 4.098 21 C -0.179 4.179 22 C -0.019 4.019 23 O -0.305 6.305 24 C -0.015 4.015 25 C -0.189 4.189 26 C -0.307 4.307 27 C 0.017 3.983 28 N -0.223 5.223 29 H 0.247 0.753 30 H 0.072 0.928 31 H 0.038 0.962 32 H 0.038 0.962 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.227 0.773 38 H 0.177 0.823 39 H 0.063 0.937 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.103 0.897 44 H 0.066 0.934 45 H 0.111 0.889 46 H 0.067 0.933 47 H 0.110 0.890 48 H 0.089 0.911 49 H 0.091 0.909 50 H 0.160 0.840 51 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 12.295 -28.537 -2.513 31.174 hybrid contribution 2.138 1.969 0.036 2.907 sum 14.434 -26.568 -2.477 30.337 Atomic orbital electron populations 1.69949 1.06062 1.26920 1.50137 1.25021 0.94858 0.99314 0.95143 0.86640 0.79577 0.83081 0.78573 1.20242 1.21208 1.20244 1.21134 0.92915 0.90910 1.51502 0.92710 1.19028 0.93805 0.90731 0.97807 1.21917 0.99899 0.93211 1.00942 1.21803 0.91673 0.84532 1.02698 1.46171 1.10740 1.05913 1.74234 1.17947 0.87916 0.82363 0.78028 1.90858 1.14946 1.84031 1.48878 1.19979 0.82820 0.95232 1.03759 1.21905 1.00567 0.87821 1.02567 1.21406 0.89603 0.91933 0.91591 1.73018 1.34133 0.98473 1.21657 1.22160 0.94329 0.94203 0.97435 1.21148 0.95005 0.95833 0.97797 1.22128 0.98143 0.99245 0.98377 1.22656 0.90031 0.92166 0.97004 1.87916 1.15748 1.33501 1.93363 1.22535 0.85701 0.96970 0.96273 1.22245 0.98806 0.98213 0.99682 1.22434 0.97128 0.95258 1.15910 1.21427 0.93618 0.88727 0.94572 1.41016 1.03574 1.09937 1.67761 0.75329 0.92780 0.96156 0.96166 0.92606 0.92619 0.91086 0.91078 0.77310 0.82302 0.93714 0.90936 0.91394 0.91397 0.89654 0.93365 0.88922 0.93343 0.89003 0.91054 0.90943 0.83982 0.82211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.93 13.29 55.43 0.74 -25.20 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 7 C -0.53 -14.02 9.11 -34.44 -0.31 -14.33 16 8 H 0.05 1.39 7.74 -52.48 -0.41 0.99 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.12 -2.12 5.27 -26.73 -0.14 -2.26 16 11 C 0.11 1.76 5.67 -4.04 -0.02 1.74 16 12 N -0.72 -8.40 5.55 -61.21 -0.34 -8.74 16 13 C 0.55 7.16 7.80 -12.28 -0.10 7.07 16 14 O -0.51 -8.70 16.26 5.34 0.09 -8.61 16 15 C 0.09 0.94 6.77 -82.47 -0.56 0.38 16 16 C -0.10 -1.18 9.80 -36.87 -0.36 -1.54 16 17 C 0.23 2.58 6.98 -80.72 -0.56 2.02 16 18 N -0.56 -6.64 10.18 -55.77 -0.57 -7.20 16 19 C 0.05 0.46 5.66 -4.04 -0.02 0.44 16 20 C -0.08 -0.68 2.48 -90.43 -0.22 -0.91 16 21 C -0.14 -1.28 5.27 -26.59 -0.14 -1.42 16 22 C 0.06 0.49 6.84 37.20 0.25 0.74 16 23 O -0.39 -3.74 10.77 -35.23 -0.38 -4.11 16 24 C 0.06 0.45 6.84 37.21 0.25 0.70 16 25 C -0.15 -1.05 5.42 -26.59 -0.14 -1.19 16 26 C -0.28 -2.21 9.43 -37.35 -0.35 -2.56 16 27 C 0.15 0.81 11.12 -17.04 -0.19 0.62 16 28 N -0.61 -4.02 5.25 -9.76 -0.05 -4.07 16 29 H 0.41 1.64 6.93 -40.82 -0.28 1.36 16 30 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 31 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.39 3.20 6.64 -40.82 -0.27 2.93 16 38 H 0.16 2.03 7.57 -52.49 -0.40 1.64 16 39 H 0.04 0.37 5.25 -51.93 -0.27 0.09 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.08 0.87 7.87 -51.93 -0.41 0.46 16 44 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 47 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 50 H 0.14 0.93 5.95 -52.49 -0.31 0.61 16 51 H 0.16 0.26 8.06 -52.49 -0.42 -0.17 16 LS Contribution 413.50 15.07 6.23 6.23 Total: -1.00 -33.65 413.50 -10.41 -44.06 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -8.25 Total: 0.47 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: -2.86 Total: -8.55 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: -0.22 Total: -45.21 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: -0.29 Total: -12.73 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -33.65 -10.41 -44.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198536851.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.483 kcal (2) G-P(sol) polarization free energy of solvation -33.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds