Wall clock time and date at job start Wed Apr 1 2020 04:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99958 * 2 1 4 4 H 1.48508 * 109.47441 * 239.99964 * 3 2 1 5 5 H 1.48497 * 109.47292 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47222 * 119.99851 * 3 2 1 7 7 C 1.37874 * 120.00182 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00117 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99931 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47120 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46973 * 180.02562 * 10 9 7 12 12 N 1.46509 * 109.47146 * 179.97438 * 11 10 9 13 13 C 1.34776 * 119.99690 * 179.97438 * 12 11 10 14 14 O 1.21525 * 120.00568 * 0.02562 * 13 12 11 15 15 C 1.47950 * 119.99224 * 180.02562 * 13 12 11 16 16 C 1.35706 * 119.49527 * 180.02562 * 15 13 12 17 17 C 1.47144 * 118.42436 * 179.71897 * 16 15 13 18 18 N 1.31990 * 121.16941 * 179.97438 * 17 16 15 19 19 C 1.46496 * 120.00303 * 174.07920 * 18 17 16 20 20 C 1.52999 * 109.47472 * 241.65509 * 19 18 17 21 21 C 1.53183 * 109.54057 * 294.55464 * 20 19 18 22 22 C 1.53087 * 109.16155 * 183.15123 * 21 20 19 23 23 O 1.42907 * 109.41775 * 57.60656 * 22 21 20 24 24 C 1.42896 * 114.09648 * 298.84058 * 23 22 21 25 25 C 1.53095 * 109.41698 * 61.15761 * 24 23 22 26 26 C 1.46803 * 117.66020 * 359.97438 * 17 16 15 27 27 C 1.34765 * 118.76853 * 0.02562 * 26 17 16 28 28 N 1.35759 * 121.46202 * 359.97438 * 27 26 17 29 29 H 0.97000 * 118.66084 * 180.02562 * 28 27 26 30 30 H 0.97000 * 119.99628 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.47246 * 59.99988 * 9 7 2 32 32 H 1.09006 * 109.46916 * 300.00299 * 9 7 2 33 33 H 1.08995 * 109.47495 * 59.99521 * 10 9 7 34 34 H 1.09000 * 109.46833 * 299.99587 * 10 9 7 35 35 H 1.09000 * 109.47417 * 60.00144 * 11 10 9 36 36 H 1.09000 * 109.46897 * 299.99417 * 11 10 9 37 37 H 0.97000 * 119.99579 * 0.02562 * 12 11 10 38 38 H 1.08000 * 120.78809 * 359.69612 * 16 15 13 39 39 H 1.09007 * 109.46802 * 1.65301 * 19 18 17 40 40 H 1.09000 * 109.47809 * 121.65085 * 19 18 17 41 41 H 1.09002 * 109.53880 * 54.81524 * 20 19 18 42 42 H 1.09001 * 109.51734 * 303.05573 * 21 20 19 43 43 H 1.08995 * 109.52205 * 63.24319 * 21 20 19 44 44 H 1.09004 * 109.48063 * 297.62456 * 22 21 20 45 45 H 1.08995 * 109.48016 * 177.59134 * 22 21 20 46 46 H 1.08996 * 109.48784 * 301.17704 * 24 23 22 47 47 H 1.09000 * 109.49177 * 181.14541 * 24 23 22 48 48 H 1.08994 * 109.52881 * 182.48447 * 25 24 23 49 49 H 1.09004 * 109.52210 * 62.29367 * 25 24 23 50 50 H 1.07998 * 120.61487 * 180.02562 * 26 17 16 51 51 H 1.08001 * 119.27328 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9870 -0.0012 12 7 2.4324 -6.1006 -0.0018 13 6 1.9831 -7.3713 -0.0019 14 8 0.7883 -7.5934 -0.0020 15 6 2.9446 -8.4957 -0.0020 16 6 2.4811 -9.7712 -0.0026 17 6 3.4580 -10.8715 -0.0090 18 7 3.0672 -12.1321 -0.0094 19 6 4.0549 -13.2053 -0.1466 20 6 3.7671 -14.0036 -1.4197 21 6 2.4210 -14.7214 -1.2811 22 6 2.1785 -15.5793 -2.5256 23 8 3.2552 -16.5059 -2.6811 24 6 4.5324 -15.8912 -2.8623 25 6 4.8696 -15.0458 -1.6313 26 6 4.8828 -10.5177 -0.0149 27 6 5.2276 -9.2149 -0.0137 28 7 4.2895 -8.2336 -0.0076 29 1 4.5832 -7.3092 -0.0074 30 1 -0.4849 0.8401 -0.0004 31 1 0.6241 -2.5567 -0.8903 32 1 0.6247 -2.5570 0.8897 33 1 2.8721 -3.6043 0.8893 34 1 2.8719 -3.6043 -0.8906 35 1 0.8540 -5.0446 -0.8914 36 1 0.8535 -5.0450 0.8886 37 1 3.3861 -5.9233 -0.0014 38 1 1.4203 -9.9739 0.0019 39 1 5.0541 -12.7739 -0.2064 40 1 3.9958 -13.8664 0.7179 41 1 3.7352 -13.3279 -2.2744 42 1 2.4374 -15.3587 -0.3969 43 1 1.6235 -13.9847 -1.1854 44 1 2.1219 -14.9370 -3.4045 45 1 1.2420 -16.1257 -2.4136 46 1 4.5067 -15.2530 -3.7455 47 1 5.2918 -16.6621 -2.9930 48 1 5.8231 -14.5409 -1.7861 49 1 4.9354 -15.6896 -0.7542 50 1 5.6405 -11.2872 -0.0201 51 1 6.2735 -8.9454 -0.0184 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198536851.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:38 Heat of formation + Delta-G solvation = -74.346387 kcal Electronic energy + Delta-G solvation = -28746.544183 eV Core-core repulsion = 24644.473502 eV Total energy + Delta-G solvation = -4102.070681 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.78260 -40.40941 -39.89333 -37.31577 -37.10723 -35.33820 -34.80014 -33.28187 -32.64384 -32.03754 -31.14483 -28.81025 -28.05812 -25.89653 -24.56770 -24.47977 -23.72720 -22.97838 -22.39873 -21.22330 -20.85582 -20.19077 -18.52950 -18.18455 -17.53865 -17.12799 -17.01627 -16.91379 -16.77011 -16.47045 -16.40140 -15.79057 -15.73163 -15.60595 -15.38864 -15.02824 -14.82137 -14.51615 -14.25827 -14.20088 -13.78596 -13.53311 -13.49925 -13.32217 -13.11169 -12.73014 -12.71526 -12.55921 -12.42745 -12.35048 -12.27222 -11.73779 -11.67267 -11.66999 -11.48924 -11.32181 -11.19817 -11.13192 -10.73296 -10.53123 -10.48465 -10.27110 -9.87602 -8.22927 -8.18051 -6.29388 -0.22648 0.59143 1.43515 1.45672 1.53521 1.71443 1.73089 1.95356 2.43244 2.63472 2.95649 3.16341 3.26682 3.57740 3.74793 3.81035 3.90846 3.94795 4.07999 4.10716 4.18301 4.21190 4.26598 4.37713 4.46017 4.46742 4.53783 4.60742 4.70653 4.71779 4.79969 4.85604 4.89216 4.93196 4.94314 4.94820 5.00664 5.13772 5.16571 5.19045 5.25147 5.27582 5.39371 5.53088 5.54808 5.72441 5.85950 5.87622 6.20720 6.23279 6.24397 6.38049 6.88658 6.90996 7.15995 7.40573 8.93561 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.027971 B = 0.001385 C = 0.001355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.813130 B =20204.837871 C =20653.986659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.964 3.036 4 H -0.265 1.265 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.541 4.541 8 H 0.069 0.931 9 C 0.021 3.979 10 C -0.102 4.102 11 C 0.127 3.873 12 N -0.701 5.701 13 C 0.555 3.445 14 O -0.559 6.559 15 C 0.109 3.891 16 C -0.125 4.125 17 C 0.223 3.777 18 N -0.602 5.602 19 C 0.053 3.947 20 C -0.076 4.076 21 C -0.137 4.137 22 C 0.059 3.941 23 O -0.405 6.405 24 C 0.056 3.944 25 C -0.144 4.144 26 C -0.298 4.298 27 C 0.168 3.832 28 N -0.596 5.596 29 H 0.428 0.572 30 H 0.262 0.738 31 H -0.008 1.008 32 H -0.008 1.008 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.415 0.585 38 H 0.133 0.867 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.057 0.943 42 H 0.061 0.939 43 H 0.066 0.934 44 H 0.050 0.950 45 H 0.099 0.901 46 H 0.053 0.947 47 H 0.110 0.890 48 H 0.091 0.909 49 H 0.070 0.930 50 H 0.159 0.841 51 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.645 -27.129 -2.801 33.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.789 3.211 4 H -0.190 1.190 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.579 4.579 8 H 0.087 0.913 9 C -0.017 4.017 10 C -0.140 4.140 11 C 0.004 3.996 12 N -0.353 5.353 13 C 0.341 3.659 14 O -0.436 6.436 15 C -0.002 4.002 16 C -0.154 4.154 17 C 0.046 3.954 18 N -0.319 5.319 19 C -0.077 4.077 20 C -0.095 4.095 21 C -0.175 4.175 22 C -0.017 4.017 23 O -0.324 6.324 24 C -0.021 4.021 25 C -0.182 4.182 26 C -0.326 4.326 27 C 0.040 3.960 28 N -0.209 5.209 29 H 0.267 0.733 30 H 0.071 0.929 31 H 0.011 0.989 32 H 0.011 0.989 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.253 0.747 38 H 0.151 0.849 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.085 0.915 44 H 0.068 0.932 45 H 0.117 0.883 46 H 0.071 0.929 47 H 0.128 0.872 48 H 0.109 0.891 49 H 0.089 0.911 50 H 0.176 0.824 51 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 16.824 -28.057 -2.740 32.829 hybrid contribution 0.725 1.873 0.113 2.012 sum 17.550 -26.184 -2.627 31.630 Atomic orbital electron populations 1.70105 1.07951 1.27768 1.51681 1.25996 0.95674 1.03485 0.94870 0.85509 0.78195 0.78113 0.79264 1.18995 1.21521 1.19011 1.21669 0.93844 0.91946 1.50419 0.91258 1.18959 0.94550 0.93005 0.95163 1.21614 0.98469 0.91314 1.02611 1.21388 0.91815 0.84933 1.01483 1.45806 1.11398 1.04610 1.73505 1.18266 0.87733 0.82990 0.76951 1.90845 1.17236 1.84726 1.50818 1.19435 0.84148 0.93323 1.03269 1.21816 1.00000 0.89106 1.04429 1.21587 0.91172 0.91468 0.91129 1.72960 1.35794 0.99438 1.23676 1.22138 0.94670 0.93623 0.97277 1.21117 0.95288 0.95958 0.97095 1.22049 0.98190 0.98776 0.98496 1.22661 0.90311 0.92101 0.96638 1.87888 1.16753 1.34348 1.93437 1.22739 0.85109 0.97671 0.96540 1.22200 0.98880 0.97624 0.99483 1.22550 0.95427 0.96999 1.17611 1.22163 0.95274 0.87468 0.91087 1.41088 1.02062 1.11438 1.66289 0.73339 0.92927 0.98925 0.98948 0.90836 0.90830 0.92499 0.92513 0.74726 0.84894 0.92147 0.91751 0.92487 0.92060 0.91494 0.93155 0.88251 0.92887 0.87237 0.89094 0.91111 0.82395 0.76756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.45 13.29 21.45 0.28 -55.16 16 2 C 0.00 -0.14 5.46 84.65 0.46 0.33 16 3 Si 0.96 41.99 29.54 68.60 2.03 44.02 16 4 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 5 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 7 C -0.54 -28.48 9.11 25.60 0.23 -28.24 16 8 H 0.07 3.37 7.74 -2.91 -0.02 3.34 16 9 C 0.02 1.01 4.97 29.85 0.15 1.16 16 10 C -0.10 -3.40 5.27 30.59 0.16 -3.24 16 11 C 0.13 3.85 5.67 86.38 0.49 4.34 16 12 N -0.70 -15.04 5.55 -465.87 -2.58 -17.62 16 13 C 0.56 14.07 7.80 86.82 0.68 14.75 16 14 O -0.56 -19.69 16.26 -3.79 -0.06 -19.76 16 15 C 0.11 2.10 6.77 40.32 0.27 2.37 16 16 C -0.13 -3.01 9.80 24.02 0.24 -2.78 16 17 C 0.22 4.91 6.98 43.70 0.30 5.22 16 18 N -0.60 -14.88 10.18 -330.35 -3.36 -18.24 16 19 C 0.05 0.99 5.66 86.38 0.49 1.48 16 20 C -0.08 -1.30 2.48 -10.67 -0.03 -1.33 16 21 C -0.14 -2.63 5.27 30.68 0.16 -2.47 16 22 C 0.06 1.03 6.84 72.01 0.49 1.52 16 23 O -0.40 -7.67 10.77 -148.98 -1.60 -9.27 16 24 C 0.06 0.74 6.84 72.01 0.49 1.23 16 25 C -0.14 -1.80 5.42 30.68 0.17 -1.64 16 26 C -0.30 -3.88 9.43 23.71 0.22 -3.65 16 27 C 0.17 1.08 11.12 83.29 0.93 2.01 16 28 N -0.60 -5.57 5.25 -184.80 -0.97 -6.54 16 29 H 0.43 1.29 6.93 -92.71 -0.64 0.65 16 30 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 31 H -0.01 -0.41 8.14 -2.38 -0.02 -0.43 16 32 H -0.01 -0.42 8.14 -2.38 -0.02 -0.44 16 33 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.41 5.20 6.64 -92.71 -0.62 4.59 16 38 H 0.13 3.81 7.57 -2.91 -0.02 3.78 16 39 H 0.06 0.90 5.25 -2.38 -0.01 0.88 16 40 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.07 1.51 7.87 -2.39 -0.02 1.49 16 44 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 45 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 46 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 47 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 48 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 49 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 50 H 0.16 1.52 5.95 -2.91 -0.02 1.50 16 51 H 0.22 -0.86 8.06 -2.91 -0.02 -0.89 16 Total: -1.00 -77.53 413.50 -0.68 -78.20 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -0.32 Total: 13.33 kcal Atomic # 6 Polarization: -14.86 SS G_CDS: 5.91 Total: -8.95 kcal Atomic # 7 Polarization: -90.94 SS G_CDS: -6.63 Total: -97.57 kcal Atomic # 8 Polarization: -27.36 SS G_CDS: -1.67 Total: -29.03 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Total: -77.53 -0.68 -78.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198536851.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.857 kcal (2) G-P(sol) polarization free energy of solvation -77.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds