Wall clock time and date at job start Wed Apr 1 2020 04:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 119.99871 * 2 1 4 4 H 1.48497 * 109.47684 * 270.00289 * 3 2 1 5 5 H 1.48504 * 109.46700 * 30.00523 * 3 2 1 6 6 H 1.48501 * 109.47146 * 150.00176 * 3 2 1 7 7 C 1.38811 * 120.00289 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99793 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00141 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00533 * 180.27421 * 9 7 2 11 11 C 1.52997 * 109.47646 * 179.72372 * 10 9 7 12 12 H 1.08998 * 109.47245 * 305.00045 * 11 10 9 13 13 C 1.54803 * 109.47345 * 185.00099 * 11 10 9 14 14 N 1.45115 * 109.54162 * 172.12296 * 13 11 10 15 15 C 1.34780 * 118.75903 * 269.30795 * 14 13 11 16 16 O 1.21632 * 119.99948 * 355.93130 * 15 14 13 17 17 C 1.47260 * 120.00426 * 175.93653 * 15 14 13 18 18 C 1.46749 * 126.96937 * 45.26667 * 17 15 14 19 19 C 1.34498 * 106.36792 * 179.88934 * 18 17 15 20 20 N 1.36430 * 109.00971 * 0.36940 * 19 18 17 21 21 C 1.35217 * 109.89626 * 359.76985 * 20 19 18 22 22 C 1.50997 * 124.54475 * 179.97438 * 21 20 19 23 23 C 1.53412 * 108.24140 * 344.26714 * 22 21 20 24 24 C 1.53160 * 109.02828 * 48.50564 * 23 22 21 25 25 C 1.47011 * 126.01301 * 179.76370 * 20 19 18 26 26 C 1.47510 * 122.48640 * 89.28003 * 14 13 11 27 27 C 1.53560 * 111.03093 * 318.37251 * 26 14 13 28 28 C 1.51540 * 109.58133 * 320.01938 * 27 26 14 29 29 O 1.38014 * 109.46777 * 64.99316 * 11 10 9 30 30 H 0.96995 * 120.00280 * 359.97438 * 1 2 3 31 31 H 0.97002 * 119.99630 * 0.02562 * 9 7 2 32 32 H 1.09000 * 109.46932 * 299.72969 * 10 9 7 33 33 H 1.09007 * 109.47011 * 59.72337 * 10 9 7 34 34 H 1.08995 * 109.46006 * 292.14749 * 13 11 10 35 35 H 1.09004 * 109.45844 * 52.11089 * 13 11 10 36 36 H 1.08006 * 126.81498 * 0.02562 * 18 17 15 37 37 H 1.07991 * 125.49564 * 180.10455 * 19 18 17 38 38 H 1.09004 * 109.70647 * 104.01532 * 22 21 20 39 39 H 1.08997 * 109.70894 * 224.63829 * 22 21 20 40 40 H 1.09007 * 109.56922 * 288.62793 * 23 22 21 41 41 H 1.09001 * 109.53798 * 168.36160 * 23 22 21 42 42 H 1.08998 * 109.46097 * 170.38756 * 24 23 22 43 43 H 1.08999 * 109.46082 * 50.42522 * 24 23 22 44 44 H 1.08999 * 109.56382 * 282.23668 * 25 20 19 45 45 H 1.09000 * 109.56191 * 42.46183 * 25 20 19 46 46 H 1.09005 * 109.16366 * 78.77233 * 26 14 13 47 47 H 1.08994 * 109.16875 * 197.96711 * 26 14 13 48 48 H 1.09000 * 109.45311 * 80.05340 * 27 26 14 49 49 H 1.09001 * 109.45540 * 199.98614 * 27 26 14 50 50 H 1.08996 * 109.59056 * 211.18146 * 28 27 26 51 51 H 1.08996 * 109.58489 * 331.62058 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4475 2.6526 0.7002 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 0.0050 11 6 1.0640 -4.8197 0.0107 12 1 0.3803 -4.7090 0.8523 13 6 1.8339 -6.1561 0.1437 14 7 0.8911 -7.2423 0.3363 15 6 0.5436 -7.5842 1.5929 16 8 1.0735 -7.0364 2.5408 17 6 -0.4774 -8.6212 1.8183 18 6 -0.5800 -9.9202 1.1433 19 6 -1.6571 -10.5342 1.6647 20 7 -2.2271 -9.7166 2.5963 21 6 -1.5226 -8.5665 2.6919 22 6 -1.8640 -7.4282 3.6234 23 6 -3.3041 -7.6247 4.1142 24 6 -3.4757 -9.0694 4.5932 25 6 -3.4272 -10.0163 3.3908 26 6 0.2982 -7.9860 -0.7911 27 6 -0.0937 -7.0364 -1.9325 28 6 -0.6924 -5.7693 -1.3559 29 8 0.3465 -4.8173 -1.1683 30 1 -0.4850 0.8400 0.0004 31 1 0.3557 -2.3880 -0.0005 32 1 2.6845 -3.7185 -0.8850 33 1 2.6852 -3.7104 0.8950 34 1 2.4123 -6.3337 -0.7628 35 1 2.5071 -6.1037 0.9994 36 1 0.0799 -10.3073 0.3809 37 1 -2.0156 -11.5144 1.3873 38 1 -1.1814 -7.4313 4.4732 39 1 -1.7842 -6.4806 3.0906 40 1 -3.9984 -7.4264 3.2976 41 1 -3.5047 -6.9409 4.9390 42 1 -4.4359 -9.1728 5.0985 43 1 -2.6722 -9.3202 5.2857 44 1 -4.3165 -9.8729 2.7772 45 1 -3.3863 -11.0486 3.7385 46 1 1.0226 -8.7113 -1.1618 47 1 -0.5899 -8.5141 -0.4440 48 1 0.7918 -6.7862 -2.5168 49 1 -0.8265 -7.5242 -2.5753 50 1 -1.4347 -5.3688 -2.0463 51 1 -1.1628 -5.9905 -0.3979 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200714958.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:20 Heat of formation + Delta-G solvation = -11.172223 kcal Electronic energy + Delta-G solvation = -31917.499629 eV Core-core repulsion = 27818.168385 eV Total energy + Delta-G solvation = -4099.331244 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.85539 -40.09322 -38.12425 -36.28273 -35.37416 -34.46701 -32.97517 -32.60894 -30.79409 -29.89646 -29.01751 -27.75751 -26.45196 -25.08479 -24.50290 -23.19129 -21.95600 -21.71852 -20.92766 -20.81593 -19.60652 -18.28561 -17.56255 -17.06036 -16.37505 -16.26932 -16.03899 -15.84398 -15.47862 -14.75750 -14.54597 -14.50376 -14.41141 -14.10777 -14.07803 -13.69308 -13.54143 -13.52464 -13.08026 -12.93406 -12.71716 -12.44373 -12.42148 -12.09703 -11.94900 -11.78672 -11.47124 -11.42963 -11.29295 -11.18899 -11.11091 -10.84193 -10.72727 -10.69271 -10.14111 -9.95134 -9.70520 -9.58324 -9.24203 -8.75901 -8.68362 -8.41143 -8.25263 -6.76939 -5.62754 -2.90342 1.81356 2.27445 2.51013 3.07781 3.38064 3.52632 3.56963 3.59137 4.09232 4.10012 4.24253 4.34833 4.48405 4.65047 4.69469 4.81019 4.83439 4.88234 4.92215 4.95484 5.08375 5.19433 5.26762 5.35111 5.39559 5.40668 5.47084 5.52821 5.57927 5.64416 5.68779 5.70268 5.74292 5.79222 5.80787 5.86586 5.93648 6.00594 6.12633 6.14227 6.24647 6.43178 6.58869 6.73079 6.78126 6.89052 6.91190 7.04101 7.49017 7.81350 8.14203 8.39637 8.55730 9.67055 10.26337 10.62430 11.60360 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013904 B = 0.002766 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.299856 B =10118.960254 C =11166.623619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.016 4.016 3 Si 0.907 3.093 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.234 4.234 8 H 0.070 0.930 9 N -0.726 5.726 10 C 0.166 3.834 11 C 0.090 3.910 12 H 0.050 0.950 13 C 0.082 3.918 14 N -0.604 5.604 15 C 0.586 3.414 16 O -0.538 6.538 17 C -0.225 4.225 18 C -0.171 4.171 19 C -0.014 4.014 20 N -0.445 5.445 21 C 0.100 3.900 22 C -0.059 4.059 23 C -0.126 4.126 24 C -0.136 4.136 25 C 0.104 3.896 26 C 0.103 3.897 27 C -0.167 4.167 28 C 0.075 3.925 29 O -0.369 6.369 30 H 0.253 0.747 31 H 0.386 0.614 32 H 0.027 0.973 33 H 0.035 0.965 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.145 0.855 37 H 0.165 0.835 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.087 0.913 43 H 0.075 0.925 44 H 0.082 0.918 45 H 0.088 0.912 46 H 0.061 0.939 47 H 0.096 0.904 48 H 0.079 0.921 49 H 0.081 0.919 50 H 0.086 0.914 51 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.415 -27.883 3.626 29.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.212 4.212 3 Si 0.738 3.262 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.365 4.365 8 H 0.088 0.912 9 N -0.370 5.370 10 C 0.038 3.962 11 C 0.030 3.970 12 H 0.068 0.932 13 C -0.042 4.042 14 N -0.336 5.336 15 C 0.375 3.625 16 O -0.416 6.416 17 C -0.235 4.235 18 C -0.195 4.195 19 C -0.141 4.141 20 N -0.123 5.123 21 C -0.015 4.015 22 C -0.097 4.097 23 C -0.164 4.164 24 C -0.174 4.174 25 C -0.017 4.017 26 C -0.020 4.020 27 C -0.205 4.205 28 C -0.002 4.002 29 O -0.287 6.287 30 H 0.063 0.937 31 H 0.220 0.780 32 H 0.045 0.955 33 H 0.052 0.948 34 H 0.099 0.901 35 H 0.112 0.888 36 H 0.163 0.837 37 H 0.182 0.818 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.088 0.912 41 H 0.098 0.902 42 H 0.105 0.895 43 H 0.094 0.906 44 H 0.100 0.900 45 H 0.106 0.894 46 H 0.080 0.920 47 H 0.114 0.886 48 H 0.098 0.902 49 H 0.100 0.900 50 H 0.104 0.896 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.244 -27.467 4.162 29.278 hybrid contribution 0.060 0.408 -0.041 0.415 sum -9.184 -27.059 4.121 28.871 Atomic orbital electron populations 1.69678 1.05083 1.25374 1.58106 1.24726 0.95511 0.97575 1.03367 0.86186 0.78624 0.83955 0.77429 1.21824 1.21886 1.20800 1.19245 0.91008 0.84167 1.42124 0.91192 1.42233 1.06010 0.99550 1.89224 1.20615 0.92462 0.84640 0.98512 1.22258 0.93642 0.94039 0.87083 0.93213 1.22390 0.92222 0.86340 1.03264 1.47732 1.45129 1.34892 1.05879 1.17588 0.81165 0.81210 0.82567 1.90791 1.54107 1.55244 1.41429 1.19927 1.00699 0.97840 1.05011 1.21975 0.99735 0.94451 1.03361 1.21593 0.98137 0.97817 0.96519 1.43879 1.22795 1.13818 1.31775 1.20178 0.93411 0.88956 0.98960 1.20465 0.96456 0.94971 0.97763 1.21692 0.96777 0.96076 1.01870 1.21883 1.03741 0.95071 0.96685 1.22053 0.86128 1.00588 0.92935 1.22190 0.99100 0.93888 0.86800 1.22508 1.02637 0.97258 0.98092 1.22078 0.89841 0.88382 0.99854 1.86417 1.48086 1.55699 1.38539 0.93691 0.77979 0.95503 0.94753 0.90072 0.88840 0.83704 0.81809 0.89066 0.89173 0.91241 0.90157 0.89482 0.90607 0.89968 0.89351 0.92042 0.88561 0.90238 0.90029 0.89567 0.93520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.57 13.06 55.49 0.72 -28.85 16 2 C -0.02 -0.49 5.50 -17.43 -0.10 -0.59 16 3 Si 0.91 23.35 29.55 -169.99 -5.02 18.33 16 4 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 5 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 6 H -0.28 -7.06 7.11 56.52 0.40 -6.65 16 7 C -0.23 -6.95 9.99 -15.06 -0.15 -7.10 16 8 H 0.07 2.00 7.83 -52.48 -0.41 1.59 16 9 N -0.73 -20.04 5.54 -59.91 -0.33 -20.37 16 10 C 0.17 3.71 5.92 -4.04 -0.02 3.68 16 11 C 0.09 1.72 2.68 -25.78 -0.07 1.65 16 12 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 13 C 0.08 1.30 4.90 -3.83 -0.02 1.28 16 14 N -0.60 -8.64 2.19 -173.81 -0.38 -9.02 16 15 C 0.59 9.33 7.36 -12.59 -0.09 9.24 16 16 O -0.54 -10.49 16.30 5.25 0.09 -10.40 16 17 C -0.23 -2.96 5.19 -103.48 -0.54 -3.50 16 18 C -0.17 -1.71 8.63 -37.47 -0.32 -2.04 16 19 C -0.01 -0.12 11.40 -16.83 -0.19 -0.31 16 20 N -0.45 -3.98 3.11 -111.94 -0.35 -4.33 16 21 C 0.10 1.18 6.57 -81.64 -0.54 0.65 16 22 C -0.06 -0.65 5.86 -27.52 -0.16 -0.81 16 23 C -0.13 -0.96 5.98 -26.44 -0.16 -1.12 16 24 C -0.14 -0.76 5.92 -26.58 -0.16 -0.91 16 25 C 0.10 0.57 6.90 -3.70 -0.03 0.55 16 26 C 0.10 1.11 5.17 -3.20 -0.02 1.10 16 27 C -0.17 -1.85 5.78 -27.18 -0.16 -2.01 16 28 C 0.08 1.09 6.38 36.42 0.23 1.33 16 29 O -0.37 -7.00 9.38 -26.53 -0.25 -7.25 16 30 H 0.25 7.71 8.31 -40.82 -0.34 7.37 16 31 H 0.39 11.33 7.65 -40.82 -0.31 11.01 16 32 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.03 0.76 8.14 -51.92 -0.42 0.34 16 34 H 0.08 1.17 8.11 -51.93 -0.42 0.75 16 35 H 0.09 1.58 7.22 -51.93 -0.37 1.21 16 36 H 0.15 1.20 7.48 -52.48 -0.39 0.81 16 37 H 0.16 0.82 8.06 -52.49 -0.42 0.40 16 38 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 41 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 43 H 0.08 0.47 8.11 -51.93 -0.42 0.05 16 44 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 45 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 46 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 47 H 0.10 0.98 4.76 -51.93 -0.25 0.73 16 48 H 0.08 0.94 8.01 -51.93 -0.42 0.53 16 49 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 50 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 51 H 0.05 0.70 7.40 -51.93 -0.38 0.32 16 LS Contribution 399.35 15.07 6.02 6.02 Total: -1.00 -36.78 399.35 -10.42 -47.20 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -8.43 Total: 7.59 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: -2.48 Total: 1.08 kcal Atomic # 7 Polarization: -62.24 SS G_CDS: -0.34 Total: -62.57 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: -0.16 Total: -17.65 kcal Atomic # 14 Polarization: 23.35 SS G_CDS: -5.02 Total: 18.33 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.78 -10.42 -47.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200714958.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.026 kcal (2) G-P(sol) polarization free energy of solvation -36.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds