Wall clock time and date at job start Wed Apr 1 2020 04:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 119.99871 * 2 1 4 4 H 1.48497 * 109.47684 * 270.00289 * 3 2 1 5 5 H 1.48504 * 109.46700 * 30.00523 * 3 2 1 6 6 H 1.48501 * 109.47146 * 150.00176 * 3 2 1 7 7 C 1.38811 * 120.00289 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99793 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00141 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00533 * 180.27421 * 9 7 2 11 11 C 1.52997 * 109.47646 * 179.72372 * 10 9 7 12 12 H 1.08998 * 109.47245 * 305.00045 * 11 10 9 13 13 C 1.54803 * 109.47345 * 185.00099 * 11 10 9 14 14 N 1.45115 * 109.54162 * 172.12296 * 13 11 10 15 15 C 1.34780 * 118.75903 * 269.30795 * 14 13 11 16 16 O 1.21632 * 119.99948 * 355.93130 * 15 14 13 17 17 C 1.47260 * 120.00426 * 175.93653 * 15 14 13 18 18 C 1.46749 * 126.96937 * 45.26667 * 17 15 14 19 19 C 1.34498 * 106.36792 * 179.88934 * 18 17 15 20 20 N 1.36430 * 109.00971 * 0.36940 * 19 18 17 21 21 C 1.35217 * 109.89626 * 359.76985 * 20 19 18 22 22 C 1.50997 * 124.54475 * 179.97438 * 21 20 19 23 23 C 1.53412 * 108.24140 * 344.26714 * 22 21 20 24 24 C 1.53160 * 109.02828 * 48.50564 * 23 22 21 25 25 C 1.47011 * 126.01301 * 179.76370 * 20 19 18 26 26 C 1.47510 * 122.48640 * 89.28003 * 14 13 11 27 27 C 1.53560 * 111.03093 * 318.37251 * 26 14 13 28 28 C 1.51540 * 109.58133 * 320.01938 * 27 26 14 29 29 O 1.38014 * 109.46777 * 64.99316 * 11 10 9 30 30 H 0.96995 * 120.00280 * 359.97438 * 1 2 3 31 31 H 0.97002 * 119.99630 * 0.02562 * 9 7 2 32 32 H 1.09000 * 109.46932 * 299.72969 * 10 9 7 33 33 H 1.09007 * 109.47011 * 59.72337 * 10 9 7 34 34 H 1.08995 * 109.46006 * 292.14749 * 13 11 10 35 35 H 1.09004 * 109.45844 * 52.11089 * 13 11 10 36 36 H 1.08006 * 126.81498 * 0.02562 * 18 17 15 37 37 H 1.07991 * 125.49564 * 180.10455 * 19 18 17 38 38 H 1.09004 * 109.70647 * 104.01532 * 22 21 20 39 39 H 1.08997 * 109.70894 * 224.63829 * 22 21 20 40 40 H 1.09007 * 109.56922 * 288.62793 * 23 22 21 41 41 H 1.09001 * 109.53798 * 168.36160 * 23 22 21 42 42 H 1.08998 * 109.46097 * 170.38756 * 24 23 22 43 43 H 1.08999 * 109.46082 * 50.42522 * 24 23 22 44 44 H 1.08999 * 109.56382 * 282.23668 * 25 20 19 45 45 H 1.09000 * 109.56191 * 42.46183 * 25 20 19 46 46 H 1.09005 * 109.16366 * 78.77233 * 26 14 13 47 47 H 1.08994 * 109.16875 * 197.96711 * 26 14 13 48 48 H 1.09000 * 109.45311 * 80.05340 * 27 26 14 49 49 H 1.09001 * 109.45540 * 199.98614 * 27 26 14 50 50 H 1.08996 * 109.59056 * 211.18146 * 28 27 26 51 51 H 1.08996 * 109.58489 * 331.62058 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4475 2.6526 0.7002 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 0.0050 11 6 1.0640 -4.8197 0.0107 12 1 0.3803 -4.7090 0.8523 13 6 1.8339 -6.1561 0.1437 14 7 0.8911 -7.2423 0.3363 15 6 0.5436 -7.5842 1.5929 16 8 1.0735 -7.0364 2.5408 17 6 -0.4774 -8.6212 1.8183 18 6 -0.5800 -9.9202 1.1433 19 6 -1.6571 -10.5342 1.6647 20 7 -2.2271 -9.7166 2.5963 21 6 -1.5226 -8.5665 2.6919 22 6 -1.8640 -7.4282 3.6234 23 6 -3.3041 -7.6247 4.1142 24 6 -3.4757 -9.0694 4.5932 25 6 -3.4272 -10.0163 3.3908 26 6 0.2982 -7.9860 -0.7911 27 6 -0.0937 -7.0364 -1.9325 28 6 -0.6924 -5.7693 -1.3559 29 8 0.3465 -4.8173 -1.1683 30 1 -0.4850 0.8400 0.0004 31 1 0.3557 -2.3880 -0.0005 32 1 2.6845 -3.7185 -0.8850 33 1 2.6852 -3.7104 0.8950 34 1 2.4123 -6.3337 -0.7628 35 1 2.5071 -6.1037 0.9994 36 1 0.0799 -10.3073 0.3809 37 1 -2.0156 -11.5144 1.3873 38 1 -1.1814 -7.4313 4.4732 39 1 -1.7842 -6.4806 3.0906 40 1 -3.9984 -7.4264 3.2976 41 1 -3.5047 -6.9409 4.9390 42 1 -4.4359 -9.1728 5.0985 43 1 -2.6722 -9.3202 5.2857 44 1 -4.3165 -9.8729 2.7772 45 1 -3.3863 -11.0486 3.7385 46 1 1.0226 -8.7113 -1.1618 47 1 -0.5899 -8.5141 -0.4440 48 1 0.7918 -6.7862 -2.5168 49 1 -0.8265 -7.5242 -2.5753 50 1 -1.4347 -5.3688 -2.0463 51 1 -1.1628 -5.9905 -0.3979 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200714958.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:19 Heat of formation + Delta-G solvation = -34.995295 kcal Electronic energy + Delta-G solvation = -31918.532675 eV Core-core repulsion = 27818.168385 eV Total energy + Delta-G solvation = -4100.364290 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.62781 -41.30991 -39.47101 -37.05285 -36.72261 -36.17178 -34.36193 -33.58181 -32.65841 -30.76677 -30.20352 -28.85505 -27.62941 -26.64940 -25.21698 -24.79043 -23.36777 -22.52346 -22.35798 -21.77059 -20.47407 -19.26487 -19.15386 -18.48062 -17.72305 -17.57814 -17.06304 -16.83978 -16.52435 -16.38951 -15.84620 -15.50864 -15.22262 -15.15582 -15.08564 -14.85698 -14.80192 -14.60514 -14.51120 -14.33558 -13.91229 -13.66225 -13.55183 -13.34687 -13.12988 -12.90924 -12.76613 -12.67261 -12.50714 -12.28621 -12.11117 -12.03775 -11.95016 -11.89663 -11.81192 -11.79620 -11.48971 -10.98771 -10.94390 -10.56914 -9.63984 -9.41742 -9.09819 -9.02459 -7.94266 -5.24547 0.86290 1.45982 1.49760 1.54362 1.58106 1.75925 2.07958 2.32766 2.56267 2.70460 3.38859 3.54621 3.63830 3.69517 3.73781 3.75444 3.83350 3.88007 4.01732 4.09060 4.13770 4.26895 4.34076 4.35507 4.37613 4.38438 4.42244 4.46821 4.55217 4.67289 4.69702 4.75034 4.78878 4.81773 4.87025 4.88096 4.94504 4.96868 5.08002 5.08855 5.10661 5.18551 5.20583 5.22255 5.46673 5.59284 5.81360 6.10690 6.25877 6.33357 6.45489 6.72542 7.20578 7.31872 8.05153 8.31451 9.29809 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013904 B = 0.002766 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.299856 B =10118.960254 C =11166.623619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.079 4.079 3 Si 0.981 3.019 4 H -0.284 1.284 5 H -0.293 1.293 6 H -0.268 1.268 7 C -0.248 4.248 8 H 0.078 0.922 9 N -0.741 5.741 10 C 0.164 3.836 11 C 0.108 3.892 12 H 0.014 0.986 13 C 0.094 3.906 14 N -0.602 5.602 15 C 0.578 3.422 16 O -0.591 6.591 17 C -0.257 4.257 18 C -0.182 4.182 19 C 0.004 3.996 20 N -0.440 5.440 21 C 0.083 3.917 22 C -0.060 4.060 23 C -0.122 4.122 24 C -0.132 4.132 25 C 0.097 3.903 26 C 0.101 3.899 27 C -0.155 4.155 28 C 0.068 3.932 29 O -0.395 6.395 30 H 0.251 0.749 31 H 0.373 0.627 32 H 0.035 0.965 33 H 0.035 0.965 34 H 0.104 0.896 35 H 0.078 0.922 36 H 0.163 0.837 37 H 0.207 0.793 38 H 0.073 0.927 39 H 0.056 0.944 40 H 0.071 0.929 41 H 0.084 0.916 42 H 0.116 0.884 43 H 0.066 0.934 44 H 0.101 0.899 45 H 0.117 0.883 46 H 0.089 0.911 47 H 0.108 0.892 48 H 0.077 0.923 49 H 0.118 0.882 50 H 0.096 0.904 51 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.352 -31.032 2.501 32.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.271 4.271 3 Si 0.809 3.191 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.193 1.193 7 C -0.380 4.380 8 H 0.096 0.904 9 N -0.383 5.383 10 C 0.037 3.963 11 C 0.047 3.953 12 H 0.032 0.968 13 C -0.031 4.031 14 N -0.333 5.333 15 C 0.369 3.631 16 O -0.473 6.473 17 C -0.267 4.267 18 C -0.206 4.206 19 C -0.123 4.123 20 N -0.117 5.117 21 C -0.034 4.034 22 C -0.098 4.098 23 C -0.160 4.160 24 C -0.169 4.169 25 C -0.022 4.022 26 C -0.020 4.020 27 C -0.193 4.193 28 C -0.008 4.008 29 O -0.314 6.314 30 H 0.060 0.940 31 H 0.204 0.796 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.122 0.878 35 H 0.096 0.904 36 H 0.181 0.819 37 H 0.224 0.776 38 H 0.091 0.909 39 H 0.074 0.926 40 H 0.089 0.911 41 H 0.102 0.898 42 H 0.134 0.866 43 H 0.085 0.915 44 H 0.119 0.881 45 H 0.135 0.865 46 H 0.107 0.893 47 H 0.126 0.874 48 H 0.095 0.905 49 H 0.137 0.863 50 H 0.114 0.886 51 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -10.179 -30.681 3.007 32.465 hybrid contribution 0.285 1.328 0.310 1.393 sum -9.893 -29.352 3.318 31.152 Atomic orbital electron populations 1.69858 1.06811 1.26097 1.59432 1.25672 0.96504 1.01371 1.03511 0.85035 0.77607 0.78879 0.77582 1.21054 1.21985 1.19317 1.19692 0.91604 0.85203 1.41474 0.90383 1.42434 1.05566 1.00955 1.89338 1.20739 0.93074 0.83970 0.98527 1.21858 0.92666 0.94637 0.86117 0.96771 1.22106 0.92012 0.85380 1.03559 1.47836 1.44597 1.34206 1.06679 1.18184 0.81182 0.81361 0.82345 1.90745 1.56080 1.57347 1.43090 1.19944 1.00779 0.98783 1.07177 1.22185 1.01083 0.93074 1.04243 1.22252 0.96785 0.98599 0.94675 1.44179 1.23140 1.12600 1.31743 1.20164 0.94081 0.90170 0.99004 1.20369 0.98730 0.93812 0.96938 1.21677 0.94006 0.98271 1.01999 1.21886 1.04964 0.93163 0.96903 1.22413 0.85218 1.01939 0.92645 1.22472 1.00240 0.93853 0.85452 1.22438 1.03225 0.95391 0.98254 1.22351 0.89230 0.89493 0.99752 1.86340 1.49246 1.57917 1.37862 0.93980 0.79592 0.94683 0.94758 0.87800 0.90374 0.81941 0.77608 0.90857 0.92575 0.91065 0.89754 0.86558 0.91501 0.88107 0.86473 0.89251 0.87372 0.90476 0.86343 0.88610 0.94784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -63.36 13.06 21.65 0.28 -63.08 16 2 C -0.08 -4.83 5.50 84.86 0.47 -4.37 16 3 Si 0.98 48.71 29.55 68.60 2.03 50.74 16 4 H -0.28 -13.69 7.11 99.48 0.71 -12.99 16 5 H -0.29 -14.51 7.11 99.48 0.71 -13.80 16 6 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 7 C -0.25 -15.08 9.99 84.03 0.84 -14.24 16 8 H 0.08 4.50 7.83 -2.91 -0.02 4.48 16 9 N -0.74 -42.69 5.54 -343.45 -1.90 -44.59 16 10 C 0.16 7.66 5.92 86.38 0.51 8.17 16 11 C 0.11 4.37 2.68 31.21 0.08 4.45 16 12 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 13 C 0.09 3.10 4.90 87.25 0.43 3.53 16 14 N -0.60 -17.53 2.19 -822.05 -1.80 -19.33 16 15 C 0.58 19.48 7.36 86.61 0.64 20.12 16 16 O -0.59 -25.19 16.30 -4.13 -0.07 -25.25 16 17 C -0.26 -6.83 5.19 -19.12 -0.10 -6.93 16 18 C -0.18 -3.23 8.63 23.64 0.20 -3.02 16 19 C 0.00 0.05 11.40 83.12 0.95 1.00 16 20 N -0.44 -6.82 3.11 -508.07 -1.58 -8.41 16 21 C 0.08 1.98 6.57 41.69 0.27 2.25 16 22 C -0.06 -1.48 5.86 30.08 0.18 -1.31 16 23 C -0.12 -1.86 5.98 30.79 0.18 -1.68 16 24 C -0.13 -1.19 5.92 30.69 0.18 -1.01 16 25 C 0.10 0.72 6.90 86.32 0.60 1.32 16 26 C 0.10 1.98 5.17 86.37 0.45 2.43 16 27 C -0.16 -3.10 5.78 30.30 0.18 -2.92 16 28 C 0.07 1.98 6.38 71.50 0.46 2.43 16 29 O -0.39 -15.47 9.38 -117.86 -1.11 -16.57 16 30 H 0.25 15.72 8.31 -92.71 -0.77 14.95 16 31 H 0.37 23.11 7.65 -92.71 -0.71 22.40 16 32 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.03 1.61 8.14 -2.38 -0.02 1.59 16 34 H 0.10 2.93 8.11 -2.39 -0.02 2.91 16 35 H 0.08 2.82 7.22 -2.38 -0.02 2.80 16 36 H 0.16 2.16 7.48 -2.91 -0.02 2.13 16 37 H 0.21 0.85 8.06 -2.92 -0.02 0.83 16 38 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 39 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.07 1.06 8.12 -2.38 -0.02 1.04 16 41 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 43 H 0.07 0.75 8.11 -2.39 -0.02 0.73 16 44 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 45 H 0.12 0.29 8.14 -2.39 -0.02 0.27 16 46 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 47 H 0.11 1.94 4.76 -2.39 -0.01 1.93 16 48 H 0.08 1.64 8.01 -2.39 -0.02 1.62 16 49 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 50 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 51 H 0.03 1.07 7.40 -2.39 -0.02 1.05 16 Total: -1.00 -85.53 399.35 2.58 -82.96 By element: Atomic # 1 Polarization: 33.10 SS G_CDS: 0.22 Total: 33.32 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: 6.51 Total: 10.23 kcal Atomic # 7 Polarization: -130.41 SS G_CDS: -5.00 Total: -135.41 kcal Atomic # 8 Polarization: -40.65 SS G_CDS: -1.17 Total: -41.83 kcal Atomic # 14 Polarization: 48.71 SS G_CDS: 2.03 Total: 50.74 kcal Total: -85.53 2.58 -82.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200714958.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.962 kcal (2) G-P(sol) polarization free energy of solvation -85.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds