Wall clock time and date at job start Wed Apr 1 2020 04:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 120.00130 * 2 1 4 4 H 1.48495 * 109.47042 * 270.00086 * 3 2 1 5 5 H 1.48501 * 109.46695 * 29.99783 * 3 2 1 6 6 H 1.48496 * 109.46996 * 149.99686 * 3 2 1 7 7 C 1.38814 * 119.99811 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99489 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00140 * 0.02562 * 7 2 1 10 10 C 1.46504 * 120.00276 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47549 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.46420 * 304.98816 * 11 10 9 13 13 C 1.54811 * 109.46810 * 184.99771 * 11 10 9 14 14 N 1.45122 * 109.52375 * 172.10541 * 13 11 10 15 15 C 1.34779 * 118.75730 * 269.28816 * 14 13 11 16 16 O 1.21277 * 119.99887 * 0.02562 * 15 14 13 17 17 C 1.50699 * 119.99816 * 180.02562 * 15 14 13 18 18 C 1.53002 * 109.46711 * 180.02562 * 17 15 14 19 19 C 1.53006 * 109.46846 * 179.97438 * 18 17 15 20 20 C 1.50694 * 109.47016 * 179.97438 * 19 18 17 21 21 C 1.38222 * 119.61971 * 125.00038 * 20 19 18 22 22 C 1.38630 * 119.16715 * 179.97438 * 21 20 19 23 23 C 1.38674 * 118.41731 * 0.02562 * 22 21 20 24 24 C 1.38187 * 119.16260 * 359.97438 * 23 22 21 25 25 N 1.31864 * 119.62193 * 305.25420 * 20 19 18 26 26 C 1.47507 * 122.48614 * 89.57214 * 14 13 11 27 27 C 1.53945 * 110.81827 * 317.97502 * 26 14 13 28 28 C 1.51534 * 109.72660 * 320.30222 * 27 26 14 29 29 O 1.38010 * 109.46861 * 64.98474 * 11 10 9 30 30 H 0.96999 * 120.00037 * 0.02562 * 1 2 3 31 31 H 0.97000 * 120.00357 * 359.97438 * 9 7 2 32 32 H 1.09003 * 109.47045 * 59.99258 * 10 9 7 33 33 H 1.09007 * 109.46774 * 300.00341 * 10 9 7 34 34 H 1.08998 * 109.45798 * 52.09066 * 13 11 10 35 35 H 1.08997 * 109.46281 * 292.12381 * 13 11 10 36 36 H 1.08997 * 109.47356 * 60.00412 * 17 15 14 37 37 H 1.08995 * 109.47142 * 299.99567 * 17 15 14 38 38 H 1.09002 * 109.47375 * 60.00291 * 18 17 15 39 39 H 1.08994 * 109.47394 * 299.99593 * 18 17 15 40 40 H 1.09002 * 109.46727 * 60.00101 * 19 18 17 41 41 H 1.08994 * 109.46960 * 300.00065 * 19 18 17 42 42 H 1.08003 * 120.41979 * 359.96229 * 21 20 19 43 43 H 1.07997 * 120.79161 * 179.97438 * 22 21 20 44 44 H 1.07997 * 120.41840 * 179.97438 * 23 22 21 45 45 H 1.08002 * 119.61408 * 179.97438 * 24 23 22 46 46 H 1.09007 * 109.16866 * 78.48549 * 26 14 13 47 47 H 1.08994 * 109.16441 * 197.68763 * 26 14 13 48 48 H 1.09009 * 109.45746 * 200.17616 * 27 26 14 49 49 H 1.08996 * 109.28457 * 80.32025 * 27 26 14 50 50 H 1.09004 * 109.59101 * 331.51055 * 28 27 26 51 51 H 1.09006 * 109.58874 * 211.08448 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0017 11 6 1.0638 -4.8198 0.0008 12 1 0.3789 -4.7127 0.8420 13 6 1.8336 -6.1568 0.1291 14 7 0.8902 -7.2436 0.3159 15 6 0.5413 -7.5909 1.5706 16 8 1.0136 -6.9982 2.5174 17 6 -0.4357 -8.7158 1.7969 18 6 -0.6580 -8.9036 3.2990 19 6 -1.6504 -10.0453 3.5287 20 6 -1.8689 -10.2308 5.0082 21 6 -3.1522 -10.1883 5.5198 22 6 -3.3425 -10.3605 6.8821 23 6 -2.2296 -10.5696 7.6827 24 6 -0.9770 -10.5995 7.0999 25 7 -0.8332 -10.4267 5.8005 26 6 0.3033 -7.9865 -0.8152 27 6 -0.0912 -7.0280 -1.9535 28 6 -0.6905 -5.7633 -1.3725 29 8 0.3481 -4.8121 -1.1792 30 1 -0.4850 0.8400 -0.0004 31 1 0.3556 -2.3881 0.0005 32 1 2.6841 -3.7142 0.8921 33 1 2.6854 -3.7149 -0.8878 34 1 2.5057 -6.1080 0.9858 35 1 2.4131 -6.3307 -0.7775 36 1 -0.0357 -9.6358 1.3706 37 1 -1.3842 -8.4753 1.3169 38 1 -1.0582 -7.9836 3.7249 39 1 0.2904 -9.1440 3.7794 40 1 -1.2505 -10.9655 3.1027 41 1 -2.5987 -9.8045 3.0484 42 1 -3.9962 -10.0227 4.8665 43 1 -4.3337 -10.3318 7.3099 44 1 -2.3405 -10.7073 8.7481 45 1 -0.1052 -10.7614 7.7166 46 1 1.0317 -8.7077 -1.1862 47 1 -0.5835 -8.5191 -0.4719 48 1 -0.8232 -7.5131 -2.5993 49 1 0.7954 -6.7757 -2.5352 50 1 -1.1626 -5.9883 -0.4162 51 1 -1.4318 -5.3598 -2.0624 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201924273.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:09 Heat of formation + Delta-G solvation = -59.862731 kcal Electronic energy + Delta-G solvation = -30222.999137 eV Core-core repulsion = 26121.556514 eV Total energy + Delta-G solvation = -4101.442623 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.66863 -41.06386 -39.74532 -36.90595 -36.26225 -36.00842 -34.31571 -33.29518 -32.67556 -32.47019 -30.42856 -28.74859 -27.49238 -26.57489 -24.91192 -24.40832 -23.64220 -22.74153 -22.30008 -21.94544 -19.89900 -19.28354 -18.43427 -17.74748 -17.69122 -17.51620 -17.22723 -17.01781 -16.54415 -16.37836 -16.22739 -15.60946 -15.53260 -15.16665 -14.97915 -14.81980 -14.65051 -14.50170 -14.15635 -13.99803 -13.88145 -13.65095 -13.33035 -13.18271 -12.98074 -12.86462 -12.77553 -12.62495 -12.56499 -12.33489 -12.21582 -12.08717 -11.95298 -11.82500 -11.68201 -11.46229 -10.99893 -10.83706 -10.77530 -10.55192 -10.30228 -9.85384 -9.62698 -9.03862 -7.95960 -5.26116 0.20375 0.39823 1.44965 1.48688 1.56996 1.60476 1.96783 2.54905 2.72558 2.87594 3.37194 3.41723 3.50208 3.63945 3.74585 3.87855 3.98753 4.03323 4.07429 4.09569 4.13967 4.18138 4.27086 4.28359 4.30920 4.35984 4.45204 4.51286 4.57267 4.63954 4.67130 4.70054 4.73254 4.81022 4.84891 4.87391 4.90680 4.98417 5.07931 5.14308 5.15345 5.22355 5.30374 5.33411 5.41579 5.45125 5.56329 5.84710 6.24482 6.32529 6.75368 7.10901 7.17527 7.30425 8.04013 8.29881 9.28062 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011403 B = 0.002091 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.978195 B =13385.275939 C =14882.983801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.080 4.080 3 Si 0.981 3.019 4 H -0.283 1.283 5 H -0.293 1.293 6 H -0.269 1.269 7 C -0.249 4.249 8 H 0.078 0.922 9 N -0.740 5.740 10 C 0.162 3.838 11 C 0.107 3.893 12 H 0.016 0.984 13 C 0.094 3.906 14 N -0.611 5.611 15 C 0.494 3.506 16 O -0.590 6.590 17 C -0.127 4.127 18 C -0.089 4.089 19 C -0.062 4.062 20 C 0.107 3.893 21 C -0.177 4.177 22 C -0.081 4.081 23 C -0.182 4.182 24 C 0.079 3.921 25 N -0.517 5.517 26 C 0.099 3.901 27 C -0.157 4.157 28 C 0.063 3.937 29 O -0.398 6.398 30 H 0.252 0.748 31 H 0.373 0.627 32 H 0.032 0.968 33 H 0.034 0.966 34 H 0.073 0.927 35 H 0.101 0.899 36 H 0.129 0.871 37 H 0.124 0.876 38 H 0.037 0.963 39 H 0.050 0.950 40 H 0.097 0.903 41 H 0.108 0.892 42 H 0.158 0.842 43 H 0.161 0.839 44 H 0.158 0.842 45 H 0.166 0.834 46 H 0.093 0.907 47 H 0.118 0.882 48 H 0.123 0.877 49 H 0.071 0.929 50 H 0.043 0.957 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.696 -31.683 4.413 33.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.272 4.272 3 Si 0.809 3.191 4 H -0.210 1.210 5 H -0.220 1.220 6 H -0.194 1.194 7 C -0.380 4.380 8 H 0.096 0.904 9 N -0.383 5.383 10 C 0.035 3.965 11 C 0.047 3.953 12 H 0.034 0.966 13 C -0.031 4.031 14 N -0.343 5.343 15 C 0.284 3.716 16 O -0.470 6.470 17 C -0.166 4.166 18 C -0.127 4.127 19 C -0.099 4.099 20 C -0.030 4.030 21 C -0.197 4.197 22 C -0.106 4.106 23 C -0.202 4.202 24 C -0.077 4.077 25 N -0.227 5.227 26 C -0.021 4.021 27 C -0.195 4.195 28 C -0.013 4.013 29 O -0.317 6.317 30 H 0.060 0.940 31 H 0.204 0.796 32 H 0.050 0.950 33 H 0.051 0.949 34 H 0.092 0.908 35 H 0.119 0.881 36 H 0.147 0.853 37 H 0.142 0.858 38 H 0.056 0.944 39 H 0.069 0.931 40 H 0.115 0.885 41 H 0.126 0.874 42 H 0.176 0.824 43 H 0.178 0.822 44 H 0.176 0.824 45 H 0.183 0.817 46 H 0.112 0.888 47 H 0.136 0.864 48 H 0.141 0.859 49 H 0.090 0.910 50 H 0.061 0.939 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.401 -31.201 4.382 32.365 hybrid contribution -0.594 1.332 0.962 1.748 sum -7.995 -29.869 5.345 31.379 Atomic orbital electron populations 1.69856 1.06796 1.26130 1.59400 1.25685 0.96533 1.01416 1.03516 0.85028 0.77583 0.78855 0.77602 1.20998 1.21986 1.19361 1.19690 0.91592 0.85256 1.41500 0.90433 1.42427 1.05561 1.00950 1.89316 1.20757 0.93238 0.84200 0.98339 1.21832 0.92698 0.94618 0.86156 0.96574 1.22045 0.92123 0.85622 1.03287 1.48122 1.44807 1.34208 1.07196 1.21747 0.82494 0.85248 0.82065 1.90722 1.56676 1.56639 1.42956 1.21793 0.99347 0.97193 0.98315 1.21100 0.99464 0.97610 0.94574 1.20605 1.01162 0.99308 0.88860 1.21677 0.89303 0.94746 0.97302 1.22346 0.98324 1.01909 0.97116 1.22027 1.00627 0.94405 0.93575 1.22461 0.93388 1.01654 1.02698 1.23135 0.98432 0.95324 0.90839 1.67455 1.35772 1.12930 1.06550 1.22467 1.00408 0.93736 0.85502 1.22500 1.03190 0.95347 0.98421 1.22428 0.89166 0.89539 1.00150 1.86347 1.49482 1.58098 1.37809 0.93955 0.79567 0.95014 0.94851 0.90812 0.88052 0.85286 0.85821 0.94438 0.93146 0.88458 0.87405 0.82415 0.82153 0.82419 0.81682 0.88834 0.86435 0.85890 0.91020 0.93866 0.88721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -63.12 13.06 21.65 0.28 -62.83 16 2 C -0.08 -4.87 5.50 84.86 0.47 -4.41 16 3 Si 0.98 48.58 29.55 68.60 2.03 50.60 16 4 H -0.28 -13.60 7.11 99.48 0.71 -12.90 16 5 H -0.29 -14.48 7.11 99.48 0.71 -13.77 16 6 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 7 C -0.25 -15.05 9.99 84.03 0.84 -14.21 16 8 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16 9 N -0.74 -42.22 5.54 -343.44 -1.90 -44.13 16 10 C 0.16 7.42 5.92 86.38 0.51 7.93 16 11 C 0.11 4.13 2.68 31.21 0.08 4.22 16 12 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 13 C 0.09 2.82 4.86 87.26 0.42 3.25 16 14 N -0.61 -14.26 2.18 -817.24 -1.78 -16.04 16 15 C 0.49 13.10 7.63 87.66 0.67 13.77 16 16 O -0.59 -22.62 15.41 -3.02 -0.05 -22.66 16 17 C -0.13 -1.93 4.03 29.85 0.12 -1.80 16 18 C -0.09 -1.80 4.36 30.60 0.13 -1.67 16 19 C -0.06 -0.83 5.61 29.85 0.17 -0.66 16 20 C 0.11 1.97 6.18 42.55 0.26 2.23 16 21 C -0.18 -2.47 9.71 22.36 0.22 -2.25 16 22 C -0.08 -0.98 10.18 22.47 0.23 -0.75 16 23 C -0.18 -2.42 10.11 22.36 0.23 -2.19 16 24 C 0.08 1.42 11.18 84.67 0.95 2.36 16 25 N -0.52 -11.63 9.87 -183.89 -1.82 -13.45 16 26 C 0.10 1.26 6.04 86.51 0.52 1.78 16 27 C -0.16 -2.38 5.79 30.43 0.18 -2.21 16 28 C 0.06 1.58 6.37 71.50 0.46 2.04 16 29 O -0.40 -14.66 9.38 -117.80 -1.11 -15.77 16 30 H 0.25 15.68 8.31 -92.71 -0.77 14.91 16 31 H 0.37 22.85 7.65 -92.71 -0.71 22.14 16 32 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.03 1.49 8.14 -2.38 -0.02 1.47 16 34 H 0.07 2.49 7.27 -2.39 -0.02 2.48 16 35 H 0.10 2.61 8.11 -2.39 -0.02 2.60 16 36 H 0.13 1.08 8.03 -2.39 -0.02 1.06 16 37 H 0.12 1.15 7.42 -2.39 -0.02 1.13 16 38 H 0.04 0.97 8.10 -2.39 -0.02 0.95 16 39 H 0.05 1.33 7.90 -2.39 -0.02 1.31 16 40 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.11 0.81 7.87 -2.39 -0.02 0.79 16 42 H 0.16 1.29 7.95 -2.91 -0.02 1.27 16 43 H 0.16 0.97 8.06 -2.91 -0.02 0.95 16 44 H 0.16 1.16 8.06 -2.91 -0.02 1.14 16 45 H 0.17 2.25 8.06 -2.91 -0.02 2.23 16 46 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 47 H 0.12 0.72 5.87 -2.39 -0.01 0.71 16 48 H 0.12 1.00 8.14 -2.38 -0.02 0.98 16 49 H 0.07 1.30 8.01 -2.39 -0.02 1.28 16 50 H 0.04 1.10 7.41 -2.38 -0.02 1.08 16 51 H 0.09 2.21 8.14 -2.38 -0.02 2.19 16 Total: -1.00 -88.65 411.38 2.32 -86.34 By element: Atomic # 1 Polarization: 30.32 SS G_CDS: 0.21 Total: 30.53 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: 6.45 Total: 7.42 kcal Atomic # 7 Polarization: -131.23 SS G_CDS: -5.22 Total: -136.45 kcal Atomic # 8 Polarization: -37.28 SS G_CDS: -1.15 Total: -38.43 kcal Atomic # 14 Polarization: 48.58 SS G_CDS: 2.03 Total: 50.60 kcal Total: -88.65 2.32 -86.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201924273.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.473 kcal (2) G-P(sol) polarization free energy of solvation -88.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds