Wall clock time and date at job start Wed Apr 1 2020 04:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 119.99692 * 2 1 4 4 H 1.48503 * 109.46909 * 269.99498 * 3 2 1 5 5 H 1.48493 * 109.47645 * 29.99786 * 3 2 1 6 6 H 1.48504 * 109.46856 * 149.99862 * 3 2 1 7 7 C 1.38813 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00584 * 0.02562 * 7 2 1 9 9 N 1.36934 * 119.99670 * 179.97438 * 7 2 1 10 10 C 1.46506 * 119.99957 * 180.27822 * 9 7 2 11 11 C 1.52998 * 109.46961 * 179.72843 * 10 9 7 12 12 H 1.09001 * 109.47001 * 304.99570 * 11 10 9 13 13 C 1.54807 * 109.46803 * 185.00279 * 11 10 9 14 14 N 1.45124 * 109.53826 * 172.12229 * 13 11 10 15 15 C 1.34774 * 118.75807 * 269.25665 * 14 13 11 16 16 O 1.21623 * 120.00270 * 175.48408 * 15 14 13 17 17 C 1.47271 * 119.99999 * 355.48253 * 15 14 13 18 18 C 1.46738 * 126.92315 * 208.61519 * 17 15 14 19 19 C 1.34068 * 106.31163 * 179.97438 * 18 17 15 20 20 N 1.37080 * 109.03909 * 0.02562 * 19 18 17 21 21 C 1.34572 * 109.95297 * 359.70608 * 20 19 18 22 22 C 1.47039 * 123.95215 * 179.90770 * 20 19 18 23 23 C 1.53144 * 108.83655 * 342.45846 * 22 20 19 24 24 C 1.53126 * 109.59093 * 51.21214 * 23 22 20 25 25 C 1.51089 * 126.73101 * 180.02562 * 19 18 17 26 26 C 1.47507 * 122.48542 * 89.28494 * 14 13 11 27 27 C 1.53570 * 111.03035 * 318.36575 * 26 14 13 28 28 C 1.51540 * 109.57808 * 320.02374 * 27 26 14 29 29 O 1.38009 * 109.47260 * 64.99408 * 11 10 9 30 30 H 0.96998 * 120.00385 * 0.02562 * 1 2 3 31 31 H 0.97002 * 120.00586 * 0.02562 * 9 7 2 32 32 H 1.08997 * 109.46992 * 299.72899 * 10 9 7 33 33 H 1.09004 * 109.46851 * 59.73012 * 10 9 7 34 34 H 1.09003 * 109.46008 * 292.14022 * 13 11 10 35 35 H 1.08998 * 109.46150 * 52.11631 * 13 11 10 36 36 H 1.08000 * 126.84876 * 359.97438 * 18 17 15 37 37 H 1.08000 * 125.73265 * 180.34048 * 21 20 19 38 38 H 1.08992 * 109.57745 * 102.26652 * 22 20 19 39 39 H 1.09001 * 109.57597 * 222.52620 * 22 20 19 40 40 H 1.09003 * 109.44971 * 171.24680 * 23 22 20 41 41 H 1.08993 * 109.45493 * 291.19826 * 23 22 20 42 42 H 1.08999 * 109.52692 * 49.73501 * 24 23 22 43 43 H 1.09004 * 109.52768 * 169.86933 * 24 23 22 44 44 H 1.09003 * 109.71975 * 283.89513 * 25 19 18 45 45 H 1.09005 * 109.71744 * 44.54621 * 25 19 18 46 46 H 1.08998 * 109.16961 * 78.76281 * 26 14 13 47 47 H 1.09002 * 109.16508 * 197.96727 * 26 14 13 48 48 H 1.08994 * 109.45128 * 80.05645 * 27 26 14 49 49 H 1.09001 * 109.45149 * 199.99175 * 27 26 14 50 50 H 1.09003 * 109.59064 * 211.18175 * 28 27 26 51 51 H 1.08996 * 109.59201 * 331.62176 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5476 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4709 -0.0056 11 6 5.6163 -2.1912 -0.0118 12 1 5.8620 -1.5438 -0.8536 13 6 6.3888 -3.5261 -0.1450 14 7 7.8009 -3.2526 -0.3381 15 6 8.2704 -3.1238 -1.5948 16 8 9.4315 -2.8135 -1.7814 17 6 7.3776 -3.3586 -2.7422 18 6 7.7627 -3.8336 -4.0761 19 6 6.6319 -3.8997 -4.7933 20 7 5.5806 -3.5030 -4.0081 21 6 6.0214 -3.1838 -2.7774 22 6 4.1855 -3.4490 -4.4696 23 6 4.1703 -3.4659 -6.0009 24 6 5.0202 -4.6334 -6.5100 25 6 6.4997 -4.3357 -6.2339 26 6 8.7418 -3.1109 0.7890 27 6 8.1156 -2.2965 1.9306 28 6 7.3173 -1.1446 1.3541 29 8 5.9734 -1.5685 1.1669 30 1 -0.4850 0.8400 -0.0004 31 1 3.8646 -0.3621 -0.0004 32 1 3.8528 -3.0440 0.8845 33 1 3.8448 -3.0408 -0.8955 34 1 6.2538 -4.1158 0.7618 35 1 6.0067 -4.0830 -1.0005 36 1 8.7586 -4.0806 -4.4132 37 1 5.4078 -2.8447 -1.9559 38 1 3.6413 -4.3134 -4.0894 39 1 3.7164 -2.5340 -4.1079 40 1 3.1451 -3.5829 -6.3524 41 1 4.5786 -2.5285 -6.3784 42 1 4.7294 -5.5482 -5.9936 43 1 4.8665 -4.7557 -7.5822 44 1 6.8441 -3.5384 -6.8925 45 1 7.0931 -5.2345 -6.4020 46 1 9.0078 -4.1007 1.1598 47 1 9.6430 -2.6057 0.4415 48 1 7.4565 -2.9383 2.5151 49 1 8.9047 -1.9058 2.5730 50 1 7.3419 -0.3014 2.0443 51 1 7.7437 -0.8479 0.3959 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202251678.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:35 Heat of formation + Delta-G solvation = -18.731397 kcal Electronic energy + Delta-G solvation = -32574.843359 eV Core-core repulsion = 28475.184324 eV Total energy + Delta-G solvation = -4099.659034 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.80479 -41.38052 -39.65116 -37.03246 -36.74127 -36.29648 -34.67603 -33.67176 -33.16860 -30.75792 -30.50970 -28.52540 -27.77701 -26.86667 -25.34806 -24.24267 -23.66345 -22.71411 -22.44272 -21.66433 -20.12517 -19.85071 -19.77366 -18.49370 -17.75535 -17.47873 -17.22292 -16.92778 -16.60268 -16.43903 -16.02048 -15.77248 -15.24711 -15.11921 -15.05765 -14.84884 -14.73976 -14.54959 -14.44033 -14.24629 -14.03464 -13.87630 -13.62710 -13.45184 -13.29352 -13.00801 -12.88909 -12.75218 -12.50004 -12.35708 -12.15366 -11.96960 -11.94161 -11.81850 -11.78845 -11.70553 -11.58593 -11.02807 -11.02342 -10.65275 -9.77518 -9.51942 -9.31167 -9.14059 -8.02427 -5.34816 0.69996 1.36503 1.39219 1.39588 1.46246 1.77100 1.99395 2.30052 2.47512 2.59311 3.30173 3.36375 3.58234 3.61195 3.72043 3.80005 3.80583 3.86064 3.91683 3.96826 4.04280 4.05832 4.18886 4.27988 4.31002 4.37159 4.42102 4.46901 4.49840 4.56366 4.63692 4.72435 4.76390 4.81862 4.83926 4.88280 4.93357 5.01804 5.04177 5.05148 5.08453 5.15943 5.18664 5.31761 5.46778 5.75493 5.75669 6.07740 6.20060 6.24648 6.29339 6.61183 7.06955 7.12368 7.82759 8.01129 9.18558 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007574 B = 0.004904 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3695.906342 B = 5708.253242 C = 8700.809052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.979 5.979 2 C -0.053 4.053 3 Si 0.941 3.059 4 H -0.280 1.280 5 H -0.296 1.296 6 H -0.260 1.260 7 C -0.227 4.227 8 H 0.068 0.932 9 N -0.753 5.753 10 C 0.163 3.837 11 C 0.083 3.917 12 H 0.039 0.961 13 C 0.070 3.930 14 N -0.603 5.603 15 C 0.584 3.416 16 O -0.585 6.585 17 C -0.259 4.259 18 C -0.169 4.169 19 C 0.023 3.977 20 N -0.435 5.435 21 C 0.032 3.968 22 C 0.087 3.913 23 C -0.131 4.131 24 C -0.119 4.119 25 C -0.051 4.051 26 C 0.108 3.892 27 C -0.152 4.152 28 C 0.066 3.934 29 O -0.390 6.390 30 H 0.257 0.743 31 H 0.364 0.636 32 H 0.042 0.958 33 H 0.056 0.944 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.145 0.855 37 H 0.185 0.815 38 H 0.099 0.901 39 H 0.086 0.914 40 H 0.106 0.894 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.098 0.902 44 H 0.089 0.911 45 H 0.100 0.900 46 H 0.084 0.916 47 H 0.080 0.920 48 H 0.085 0.915 49 H 0.112 0.888 50 H 0.102 0.898 51 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.667 -11.568 -9.073 21.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.630 5.630 2 C -0.246 4.246 3 Si 0.769 3.231 4 H -0.206 1.206 5 H -0.223 1.223 6 H -0.185 1.185 7 C -0.358 4.358 8 H 0.086 0.914 9 N -0.399 5.399 10 C 0.036 3.964 11 C 0.023 3.977 12 H 0.057 0.943 13 C -0.054 4.054 14 N -0.334 5.334 15 C 0.376 3.624 16 O -0.467 6.467 17 C -0.269 4.269 18 C -0.193 4.193 19 C -0.086 4.086 20 N -0.109 5.109 21 C -0.104 4.104 22 C -0.032 4.032 23 C -0.168 4.168 24 C -0.157 4.157 25 C -0.089 4.089 26 C -0.013 4.013 27 C -0.190 4.190 28 C -0.009 4.009 29 O -0.309 6.309 30 H 0.066 0.934 31 H 0.197 0.803 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.124 0.876 35 H 0.125 0.875 36 H 0.163 0.837 37 H 0.201 0.799 38 H 0.117 0.883 39 H 0.104 0.896 40 H 0.125 0.875 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.117 0.883 44 H 0.107 0.893 45 H 0.118 0.882 46 H 0.102 0.898 47 H 0.098 0.902 48 H 0.104 0.896 49 H 0.131 0.869 50 H 0.120 0.880 51 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 15.601 -11.495 -9.120 21.417 hybrid contribution 0.332 1.416 0.239 1.474 sum 15.933 -10.078 -8.881 20.840 Atomic orbital electron populations 1.69843 1.06785 1.26496 1.59839 1.25301 0.95872 1.00503 1.02878 0.85612 0.78691 0.80817 0.77946 1.20614 1.22267 1.18526 1.19028 0.82193 0.93689 1.40845 0.91432 1.42619 1.02632 1.03763 1.90857 1.20835 0.87073 0.88409 1.00053 1.22321 0.94619 0.93438 0.87306 0.94296 1.22804 0.79786 0.97210 1.05620 1.47756 1.09213 1.70663 1.05774 1.17873 0.86325 0.75295 0.82909 1.90685 1.19825 1.50203 1.85983 1.20366 0.92745 1.17761 0.96054 1.21580 0.98133 1.07980 0.91564 1.20858 0.85939 1.05979 0.95838 1.44263 1.08495 1.48980 1.09205 1.22850 0.94512 1.03589 0.89470 1.22434 0.78448 1.04530 0.97836 1.21876 1.03265 1.00262 0.91422 1.21646 0.93085 0.97755 1.03201 1.20529 0.98524 1.02566 0.87245 1.21962 0.92096 1.01538 0.85729 1.22410 1.01228 0.97683 0.97718 1.22377 0.81118 0.97369 1.00080 1.86359 1.29394 1.77175 1.37942 0.93369 0.80329 0.93972 0.92607 0.87556 0.87502 0.83696 0.79894 0.88334 0.89599 0.87539 0.91296 0.91194 0.88334 0.89277 0.88157 0.89811 0.90182 0.89629 0.86927 0.87963 0.94549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.16 13.97 21.65 0.30 -60.86 16 2 C -0.05 -3.09 5.50 84.86 0.47 -2.62 16 3 Si 0.94 45.61 27.74 68.60 1.90 47.51 16 4 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 5 H -0.30 -14.53 7.11 99.48 0.71 -13.83 16 6 H -0.26 -11.90 6.52 99.48 0.65 -11.25 16 7 C -0.23 -12.42 10.47 84.03 0.88 -11.54 16 8 H 0.07 3.96 8.06 -2.91 -0.02 3.94 16 9 N -0.75 -34.30 5.34 -343.45 -1.83 -36.13 16 10 C 0.16 5.73 5.63 86.38 0.49 6.21 16 11 C 0.08 2.52 1.64 31.21 0.05 2.57 16 12 H 0.04 1.30 6.90 -2.39 -0.02 1.28 16 13 C 0.07 1.73 4.39 87.25 0.38 2.11 16 14 N -0.60 -16.00 2.19 -822.01 -1.80 -17.80 16 15 C 0.58 18.84 7.60 86.62 0.66 19.50 16 16 O -0.59 -22.31 16.35 -4.10 -0.07 -22.38 16 17 C -0.26 -7.81 5.77 -19.02 -0.11 -7.92 16 18 C -0.17 -4.60 10.99 23.54 0.26 -4.34 16 19 C 0.02 0.52 6.53 40.91 0.27 0.78 16 20 N -0.43 -10.35 3.11 -507.83 -1.58 -11.93 16 21 C 0.03 0.87 8.56 83.93 0.72 1.59 16 22 C 0.09 1.67 6.89 86.32 0.59 2.27 16 23 C -0.13 -1.79 5.91 30.68 0.18 -1.61 16 24 C -0.12 -1.34 5.96 30.78 0.18 -1.15 16 25 C -0.05 -0.72 6.26 30.11 0.19 -0.54 16 26 C 0.11 2.37 6.18 86.38 0.53 2.91 16 27 C -0.15 -2.91 5.79 30.31 0.18 -2.74 16 28 C 0.07 1.68 6.38 71.50 0.46 2.14 16 29 O -0.39 -12.32 9.38 -117.78 -1.10 -13.43 16 30 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 31 H 0.36 16.70 5.52 -92.71 -0.51 16.19 16 32 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.06 1.80 7.03 -2.38 -0.02 1.78 16 34 H 0.11 2.29 8.11 -2.39 -0.02 2.27 16 35 H 0.11 2.55 4.73 -2.39 -0.01 2.54 16 36 H 0.15 3.74 8.06 -2.91 -0.02 3.72 16 37 H 0.18 5.08 2.22 -2.91 -0.01 5.08 16 38 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.07 1.04 8.11 -2.39 -0.02 1.02 16 42 H 0.07 0.80 8.12 -2.39 -0.02 0.78 16 43 H 0.10 0.70 8.14 -2.38 -0.02 0.68 16 44 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 46 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.08 1.98 6.95 -2.39 -0.02 1.96 16 48 H 0.09 1.62 8.01 -2.39 -0.02 1.60 16 49 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 50 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 51 H 0.04 1.02 7.40 -2.39 -0.02 1.00 16 Total: -1.00 -75.37 388.22 2.57 -72.80 By element: Atomic # 1 Polarization: 34.21 SS G_CDS: 0.38 Total: 34.58 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: 6.37 Total: 7.63 kcal Atomic # 7 Polarization: -121.81 SS G_CDS: -4.91 Total: -126.72 kcal Atomic # 8 Polarization: -34.64 SS G_CDS: -1.17 Total: -35.81 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 1.90 Total: 47.51 kcal Total: -75.37 2.57 -72.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202251678.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.071 kcal (2) G-P(sol) polarization free energy of solvation -75.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds