Wall clock time and date at job start Wed Apr 1 2020 05:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.45920 * 2 1 4 4 C 1.53102 * 109.46552 * 240.01506 * 2 1 3 5 5 C 1.53437 * 109.73151 * 170.14649 * 4 2 1 6 6 C 1.50596 * 108.31300 * 50.02719 * 5 4 2 7 7 O 1.33186 * 129.60633 * 163.24033 * 6 5 4 8 8 N 1.21427 * 111.57206 * 179.81870 * 7 6 5 9 9 C 1.31502 * 111.52202 * 0.42983 * 8 7 6 10 10 C 1.48331 * 127.14984 * 179.80313 * 9 8 7 11 11 O 1.21493 * 119.99643 * 179.68242 * 10 9 8 12 12 N 1.34774 * 120.00319 * 359.68715 * 10 9 8 13 13 C 1.47018 * 125.65048 * 0.02562 * 12 10 9 14 14 C 1.54321 * 107.27524 * 181.02410 * 13 12 10 15 15 C 1.55157 * 103.10033 * 22.10414 * 14 13 12 16 16 H 1.09002 * 111.00409 * 82.66048 * 15 14 13 17 17 C 1.52994 * 111.00585 * 206.50978 * 15 14 13 18 18 N 1.46497 * 109.47375 * 184.99935 * 17 15 14 19 19 C 1.36935 * 120.00372 * 180.02562 * 18 17 15 20 20 H 1.08001 * 120.00147 * 0.02562 * 19 18 17 21 21 C 1.38813 * 120.00539 * 180.02562 * 19 18 17 22 22 N 1.31627 * 119.99408 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00387 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47142 * 60.00115 * 23 21 19 25 25 H 1.48502 * 109.46959 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47050 * 299.99552 * 23 21 19 27 27 C 1.47434 * 125.64822 * 179.97438 * 12 10 9 28 28 C 1.35381 * 123.76132 * 343.27346 * 6 5 4 29 29 C 1.50066 * 124.93443 * 359.79479 * 28 6 5 30 30 H 1.09000 * 109.47085 * 300.02646 * 1 2 3 31 31 H 1.09006 * 109.46646 * 60.02349 * 1 2 3 32 32 H 1.08999 * 109.47147 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46856 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.46854 * 299.97253 * 3 2 1 35 35 H 1.09000 * 109.46993 * 59.97283 * 3 2 1 36 36 H 1.09002 * 109.43248 * 290.22499 * 4 2 1 37 37 H 1.09001 * 109.42973 * 50.12297 * 4 2 1 38 38 H 1.09003 * 109.69739 * 169.73446 * 5 4 2 39 39 H 1.09000 * 109.69122 * 290.27940 * 5 4 2 40 40 H 1.09008 * 109.88015 * 61.60739 * 13 12 10 41 41 H 1.08999 * 110.01338 * 300.51726 * 13 12 10 42 42 H 1.09002 * 110.72109 * 140.55794 * 14 13 12 43 43 H 1.09003 * 110.72356 * 263.65620 * 14 13 12 44 44 H 1.08994 * 109.47586 * 305.00130 * 17 15 14 45 45 H 1.09000 * 109.47024 * 65.00200 * 17 15 14 46 46 H 0.97005 * 120.00103 * 0.02562 * 18 17 15 47 47 H 0.96999 * 119.99725 * 179.97438 * 22 21 19 48 48 H 1.09000 * 110.36877 * 274.74580 * 27 12 10 49 49 H 1.09001 * 110.36202 * 36.96356 * 27 12 10 50 50 H 1.09003 * 109.70910 * 103.56475 * 29 28 6 51 51 H 1.09001 * 109.71043 * 224.15490 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0397 1.4426 0.0000 4 6 2.0402 -0.7214 -1.2503 5 6 3.5545 -0.5145 -1.3861 6 6 4.1982 -0.8502 -0.0667 7 8 5.4742 -1.1086 0.2141 8 7 5.6338 -1.3372 1.3959 9 6 4.4990 -1.2727 2.0573 10 6 4.2948 -1.4949 3.5096 11 8 3.1827 -1.3960 3.9887 12 7 5.3428 -1.8062 4.2977 13 6 6.7356 -1.9564 3.8515 14 6 7.5744 -2.3398 5.0889 15 6 6.5194 -2.9360 6.0579 16 1 6.3192 -3.9813 5.8223 17 6 6.9618 -2.7794 7.5141 18 7 6.0036 -3.4566 8.3911 19 6 6.1934 -3.4502 9.7473 20 1 7.0494 -2.9454 10.1703 21 6 5.2857 -4.0923 10.5783 22 7 4.2428 -4.7078 10.0627 23 14 5.5443 -4.0828 12.4283 24 1 5.5517 -2.6816 12.9199 25 1 4.4434 -4.8317 13.0858 26 1 6.8430 -4.7272 12.7499 27 6 5.2827 -2.0516 5.7502 28 6 3.5182 -0.9427 1.1002 29 6 2.0416 -0.7233 1.2541 30 1 -0.3633 0.5142 0.8897 31 1 -0.3633 0.5135 -0.8903 32 1 -0.3633 -1.0277 0.0005 33 1 3.1297 1.4428 0.0005 34 1 1.6767 1.9562 -0.8902 35 1 1.6759 1.9565 0.8897 36 1 1.8260 -1.7869 -1.1670 37 1 1.5397 -0.3188 -2.1309 38 1 3.9466 -1.1701 -2.1636 39 1 3.7616 0.5244 -1.6429 40 1 7.0956 -1.0148 3.4369 41 1 6.8037 -2.7425 3.0995 42 1 8.3253 -3.0861 4.8296 43 1 8.0437 -1.4579 5.5250 44 1 7.9491 -3.2228 7.6436 45 1 7.0027 -1.7206 7.7695 46 1 5.2345 -3.9097 8.0113 47 1 3.6087 -5.1569 10.6434 48 1 5.3471 -1.1107 6.2969 49 1 4.3634 -2.5773 6.0083 50 1 1.5361 -1.6836 1.3565 51 1 1.8508 -0.1115 2.1358 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266002423.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:41 Heat of formation + Delta-G solvation = 27.079048 kcal Electronic energy + Delta-G solvation = -30946.037908 eV Core-core repulsion = 26848.365364 eV Total energy + Delta-G solvation = -4097.672544 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -45.31303 -39.95361 -39.38522 -37.61796 -34.71835 -34.16141 -33.22135 -32.24300 -30.74627 -30.32419 -28.73046 -27.74245 -27.58473 -26.06249 -24.44701 -23.93980 -22.86765 -22.12142 -21.79570 -20.11852 -19.66543 -18.55098 -18.03495 -17.42647 -17.03484 -16.71225 -16.09512 -15.50748 -15.36047 -14.90448 -14.76118 -14.71254 -14.41925 -13.75525 -13.70169 -13.60796 -13.50517 -13.39312 -13.16136 -12.73001 -12.63805 -12.48597 -12.40023 -12.21035 -12.14376 -12.01852 -11.81461 -11.53428 -11.25284 -11.08633 -11.02896 -10.84270 -10.78457 -10.64232 -10.60287 -10.45981 -10.35620 -10.16877 -10.02513 -9.66614 -9.34541 -8.86330 -8.61411 -6.91789 -5.74282 -3.03818 0.94260 1.47209 2.58716 2.82637 3.11513 3.45881 3.49913 3.51320 3.76088 4.09613 4.19432 4.29073 4.50931 4.58925 4.60714 4.65979 4.72207 4.81903 4.87740 4.90999 5.02530 5.13881 5.18028 5.29020 5.33946 5.35865 5.37007 5.40185 5.46296 5.54893 5.55047 5.60265 5.62113 5.70433 5.71543 5.76634 5.89632 5.93383 5.97811 5.99761 6.04213 6.04535 6.08415 6.22904 6.37326 6.40143 6.69831 6.82419 7.43230 7.70816 7.76039 8.06223 8.43939 9.55014 10.11820 10.46300 11.48374 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018520 B = 0.002152 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.543662 B =13005.023938 C =14155.238893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.068 4.068 3 C -0.146 4.146 4 C -0.108 4.108 5 C -0.035 4.035 6 C -0.041 4.041 7 O 0.123 5.877 8 N -0.334 5.334 9 C -0.008 4.008 10 C 0.607 3.393 11 O -0.519 6.519 12 N -0.603 5.603 13 C 0.106 3.894 14 C -0.126 4.126 15 C -0.105 4.105 16 H 0.086 0.914 17 C 0.166 3.834 18 N -0.733 5.733 19 C -0.242 4.242 20 H 0.070 0.930 21 C -0.013 4.013 22 N -0.932 5.932 23 Si 0.908 3.092 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C 0.116 3.884 28 C -0.147 4.147 29 C -0.035 4.035 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.083 0.917 43 H 0.079 0.921 44 H 0.026 0.974 45 H 0.023 0.977 46 H 0.384 0.616 47 H 0.256 0.744 48 H 0.075 0.925 49 H 0.086 0.914 50 H 0.084 0.916 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.773 10.864 -29.429 31.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.068 4.068 3 C -0.203 4.203 4 C -0.146 4.146 5 C -0.073 4.073 6 C -0.105 4.105 7 O 0.051 5.949 8 N -0.037 5.037 9 C -0.166 4.166 10 C 0.392 3.608 11 O -0.394 6.394 12 N -0.336 5.336 13 C -0.017 4.017 14 C -0.164 4.164 15 C -0.124 4.124 16 H 0.104 0.896 17 C 0.038 3.962 18 N -0.378 5.378 19 C -0.373 4.373 20 H 0.088 0.912 21 C -0.209 4.209 22 N -0.581 5.581 23 Si 0.739 3.261 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 C -0.005 4.005 28 C -0.152 4.152 29 C -0.073 4.073 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.100 0.900 38 H 0.111 0.889 39 H 0.114 0.886 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.102 0.898 43 H 0.097 0.903 44 H 0.043 0.957 45 H 0.040 0.960 46 H 0.218 0.782 47 H 0.066 0.934 48 H 0.093 0.907 49 H 0.105 0.895 50 H 0.103 0.897 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.126 10.691 -28.609 30.562 hybrid contribution -0.680 -0.125 0.962 1.185 sum -1.805 10.566 -27.647 29.652 Atomic orbital electron populations 1.21840 0.93527 1.02221 1.02195 1.20725 0.96112 0.95695 0.94296 1.21968 1.01272 0.94949 1.02084 1.21733 0.92915 1.01618 0.98302 1.20280 0.94474 1.03200 0.89319 1.24082 0.83503 1.03977 0.98922 1.84680 1.26973 1.62919 1.20329 1.74666 1.22426 1.16744 0.89836 1.22984 0.90121 1.06641 0.96891 1.16437 0.83868 0.77986 0.82471 1.90816 1.22944 1.51769 1.73823 1.48399 1.07731 1.67520 1.09960 1.22104 0.80549 1.01576 0.97441 1.22679 0.97584 1.01726 0.94408 1.22635 0.93596 0.99552 0.96632 0.89561 1.20579 0.93443 0.95965 0.86256 1.42368 1.27872 1.64450 1.03066 1.19166 1.06887 1.28452 0.82799 0.91196 1.24760 0.97396 1.00738 0.98053 1.69657 1.14338 1.39904 1.34169 0.86255 0.76941 0.77449 0.85449 1.21258 1.21690 1.21274 1.22469 1.00337 1.00045 0.77623 1.20613 0.98637 1.05361 0.90601 1.20112 0.87210 1.01621 0.98327 0.92107 0.92336 0.92302 0.92508 0.92330 0.92304 0.90914 0.89961 0.88926 0.88572 0.91242 0.91128 0.89830 0.90257 0.95666 0.95964 0.78208 0.93419 0.90708 0.89510 0.89728 0.89105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.83 8.44 37.16 0.31 -0.52 16 2 C -0.07 -0.46 0.77 -154.17 -0.12 -0.58 16 3 C -0.15 -0.95 7.73 37.16 0.29 -0.67 16 4 C -0.11 -0.55 4.82 -26.45 -0.13 -0.67 16 5 C -0.03 -0.18 5.66 -27.71 -0.16 -0.34 16 6 C -0.04 -0.37 6.65 -35.38 -0.24 -0.61 16 7 O 0.12 1.34 11.18 19.20 0.21 1.56 16 8 N -0.33 -4.32 9.79 33.29 0.33 -4.00 16 9 C -0.01 -0.12 7.01 -82.82 -0.58 -0.70 16 10 C 0.61 10.19 7.88 -12.11 -0.10 10.10 16 11 O -0.52 -10.04 16.34 5.37 0.09 -9.96 16 12 N -0.60 -9.58 3.33 -171.30 -0.57 -10.15 16 13 C 0.11 1.39 5.56 -3.07 -0.02 1.37 16 14 C -0.13 -1.58 6.41 -24.90 -0.16 -1.74 16 15 C -0.10 -1.71 3.06 -88.35 -0.27 -1.98 16 16 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 17 C 0.17 3.28 5.72 -4.05 -0.02 3.25 16 18 N -0.73 -18.70 5.55 -59.92 -0.33 -19.03 16 19 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 20 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 21 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 22 N -0.93 -28.71 13.06 55.49 0.72 -27.99 16 23 Si 0.91 22.71 29.55 -169.99 -5.02 17.69 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 C 0.12 2.01 6.34 -2.40 -0.02 2.00 16 28 C -0.15 -1.70 5.59 -104.92 -0.59 -2.29 16 29 C -0.04 -0.36 4.41 -27.90 -0.12 -0.48 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.41 5.67 -51.93 -0.29 0.12 16 34 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 37 H 0.08 0.27 8.11 -51.93 -0.42 -0.15 16 38 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.10 0.38 6.99 -51.93 -0.36 0.02 16 40 H 0.07 0.86 7.80 -51.92 -0.40 0.46 16 41 H 0.07 0.90 7.70 -51.93 -0.40 0.51 16 42 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.08 0.94 8.04 -51.93 -0.42 0.52 16 44 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.02 0.45 7.97 -51.93 -0.41 0.03 16 46 H 0.38 10.37 7.67 -40.82 -0.31 10.06 16 47 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 48 H 0.07 1.32 7.91 -51.93 -0.41 0.91 16 49 H 0.09 1.70 8.03 -51.93 -0.42 1.29 16 50 H 0.08 0.88 8.12 -51.93 -0.42 0.46 16 51 H 0.09 1.07 7.81 -51.93 -0.41 0.67 16 LS Contribution 401.02 15.07 6.04 6.04 Total: -1.00 -33.39 401.02 -9.14 -42.53 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -8.45 Total: 4.63 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: -2.16 Total: -1.32 kcal Atomic # 7 Polarization: -61.31 SS G_CDS: 0.15 Total: -61.17 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: 0.30 Total: -8.40 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.39 -9.14 -42.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266002423.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.608 kcal (2) G-P(sol) polarization free energy of solvation -33.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds