Wall clock time and date at job start Wed Apr 1 2020 05:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.45920 * 2 1 4 4 C 1.53102 * 109.46552 * 240.01506 * 2 1 3 5 5 C 1.53437 * 109.73151 * 170.14649 * 4 2 1 6 6 C 1.50596 * 108.31300 * 50.02719 * 5 4 2 7 7 O 1.33186 * 129.60633 * 163.24033 * 6 5 4 8 8 N 1.21427 * 111.57206 * 179.81870 * 7 6 5 9 9 C 1.31502 * 111.52202 * 0.42983 * 8 7 6 10 10 C 1.48331 * 127.14984 * 179.80313 * 9 8 7 11 11 O 1.21493 * 119.99643 * 179.68242 * 10 9 8 12 12 N 1.34774 * 120.00319 * 359.68715 * 10 9 8 13 13 C 1.47018 * 125.65048 * 0.02562 * 12 10 9 14 14 C 1.54321 * 107.27524 * 181.02410 * 13 12 10 15 15 C 1.55157 * 103.10033 * 22.10414 * 14 13 12 16 16 H 1.09002 * 111.00409 * 82.66048 * 15 14 13 17 17 C 1.52994 * 111.00585 * 206.50978 * 15 14 13 18 18 N 1.46497 * 109.47375 * 184.99935 * 17 15 14 19 19 C 1.36935 * 120.00372 * 180.02562 * 18 17 15 20 20 H 1.08001 * 120.00147 * 0.02562 * 19 18 17 21 21 C 1.38813 * 120.00539 * 180.02562 * 19 18 17 22 22 N 1.31627 * 119.99408 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00387 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47142 * 60.00115 * 23 21 19 25 25 H 1.48502 * 109.46959 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47050 * 299.99552 * 23 21 19 27 27 C 1.47434 * 125.64822 * 179.97438 * 12 10 9 28 28 C 1.35381 * 123.76132 * 343.27346 * 6 5 4 29 29 C 1.50066 * 124.93443 * 359.79479 * 28 6 5 30 30 H 1.09000 * 109.47085 * 300.02646 * 1 2 3 31 31 H 1.09006 * 109.46646 * 60.02349 * 1 2 3 32 32 H 1.08999 * 109.47147 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46856 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.46854 * 299.97253 * 3 2 1 35 35 H 1.09000 * 109.46993 * 59.97283 * 3 2 1 36 36 H 1.09002 * 109.43248 * 290.22499 * 4 2 1 37 37 H 1.09001 * 109.42973 * 50.12297 * 4 2 1 38 38 H 1.09003 * 109.69739 * 169.73446 * 5 4 2 39 39 H 1.09000 * 109.69122 * 290.27940 * 5 4 2 40 40 H 1.09008 * 109.88015 * 61.60739 * 13 12 10 41 41 H 1.08999 * 110.01338 * 300.51726 * 13 12 10 42 42 H 1.09002 * 110.72109 * 140.55794 * 14 13 12 43 43 H 1.09003 * 110.72356 * 263.65620 * 14 13 12 44 44 H 1.08994 * 109.47586 * 305.00130 * 17 15 14 45 45 H 1.09000 * 109.47024 * 65.00200 * 17 15 14 46 46 H 0.97005 * 120.00103 * 0.02562 * 18 17 15 47 47 H 0.96999 * 119.99725 * 179.97438 * 22 21 19 48 48 H 1.09000 * 110.36877 * 274.74580 * 27 12 10 49 49 H 1.09001 * 110.36202 * 36.96356 * 27 12 10 50 50 H 1.09003 * 109.70910 * 103.56475 * 29 28 6 51 51 H 1.09001 * 109.71043 * 224.15490 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0397 1.4426 0.0000 4 6 2.0402 -0.7214 -1.2503 5 6 3.5545 -0.5145 -1.3861 6 6 4.1982 -0.8502 -0.0667 7 8 5.4742 -1.1086 0.2141 8 7 5.6338 -1.3372 1.3959 9 6 4.4990 -1.2727 2.0573 10 6 4.2948 -1.4949 3.5096 11 8 3.1827 -1.3960 3.9887 12 7 5.3428 -1.8062 4.2977 13 6 6.7356 -1.9564 3.8515 14 6 7.5744 -2.3398 5.0889 15 6 6.5194 -2.9360 6.0579 16 1 6.3192 -3.9813 5.8223 17 6 6.9618 -2.7794 7.5141 18 7 6.0036 -3.4566 8.3911 19 6 6.1934 -3.4502 9.7473 20 1 7.0494 -2.9454 10.1703 21 6 5.2857 -4.0923 10.5783 22 7 4.2428 -4.7078 10.0627 23 14 5.5443 -4.0828 12.4283 24 1 5.5517 -2.6816 12.9199 25 1 4.4434 -4.8317 13.0858 26 1 6.8430 -4.7272 12.7499 27 6 5.2827 -2.0516 5.7502 28 6 3.5182 -0.9427 1.1002 29 6 2.0416 -0.7233 1.2541 30 1 -0.3633 0.5142 0.8897 31 1 -0.3633 0.5135 -0.8903 32 1 -0.3633 -1.0277 0.0005 33 1 3.1297 1.4428 0.0005 34 1 1.6767 1.9562 -0.8902 35 1 1.6759 1.9565 0.8897 36 1 1.8260 -1.7869 -1.1670 37 1 1.5397 -0.3188 -2.1309 38 1 3.9466 -1.1701 -2.1636 39 1 3.7616 0.5244 -1.6429 40 1 7.0956 -1.0148 3.4369 41 1 6.8037 -2.7425 3.0995 42 1 8.3253 -3.0861 4.8296 43 1 8.0437 -1.4579 5.5250 44 1 7.9491 -3.2228 7.6436 45 1 7.0027 -1.7206 7.7695 46 1 5.2345 -3.9097 8.0113 47 1 3.6087 -5.1569 10.6434 48 1 5.3471 -1.1107 6.2969 49 1 4.3634 -2.5773 6.0083 50 1 1.5361 -1.6836 1.3565 51 1 1.8508 -0.1115 2.1358 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266002423.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:40 Heat of formation + Delta-G solvation = 6.879905 kcal Electronic energy + Delta-G solvation = -30946.913808 eV Core-core repulsion = 26848.365364 eV Total energy + Delta-G solvation = -4098.548445 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -46.25193 -41.25713 -40.00146 -38.97619 -36.52560 -35.18931 -34.04551 -33.76564 -32.16332 -31.31495 -30.15205 -28.48328 -28.15992 -27.54543 -25.88661 -24.74621 -24.18513 -23.44329 -22.73450 -21.51981 -20.72784 -19.43809 -19.12080 -18.88581 -18.25871 -17.86506 -17.45790 -16.70888 -16.58154 -16.06453 -15.76961 -15.57816 -15.35318 -15.30094 -15.14844 -14.78688 -14.45649 -14.33194 -14.13321 -14.10133 -13.97615 -13.64176 -13.19165 -13.10560 -13.08322 -12.89013 -12.73955 -12.69038 -12.58939 -12.36223 -12.23771 -12.17724 -11.96121 -11.76222 -11.72312 -11.65277 -11.61391 -11.53520 -11.26888 -11.21514 -10.95073 -10.15135 -9.92580 -9.02849 -7.96373 -5.26203 -0.06264 0.57627 1.45645 1.49407 1.51643 1.55515 1.87889 1.91016 2.54516 2.68959 3.26743 3.37156 3.47074 3.53070 3.54572 3.76898 3.79611 3.89313 3.91790 4.07689 4.11270 4.16072 4.17598 4.36095 4.38394 4.43923 4.49275 4.57934 4.61561 4.70857 4.73092 4.75917 4.76934 4.88069 4.89504 4.91788 4.96488 5.00778 5.04637 5.06632 5.12214 5.13646 5.15413 5.22162 5.33276 5.37177 5.45050 5.48057 5.52921 6.16255 6.24941 6.65626 6.95235 7.30960 8.06265 8.28496 9.27193 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018520 B = 0.002152 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.543662 B =13005.023938 C =14155.238893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.064 4.064 3 C -0.143 4.143 4 C -0.105 4.105 5 C -0.034 4.034 6 C -0.015 4.015 7 O 0.137 5.863 8 N -0.341 5.341 9 C -0.037 4.037 10 C 0.599 3.401 11 O -0.560 6.560 12 N -0.605 5.605 13 C 0.109 3.891 14 C -0.110 4.110 15 C -0.095 4.095 16 H 0.077 0.923 17 C 0.166 3.834 18 N -0.749 5.749 19 C -0.246 4.246 20 H 0.080 0.920 21 C -0.080 4.080 22 N -0.972 5.972 23 Si 0.977 3.023 24 H -0.278 1.278 25 H -0.297 1.297 26 H -0.274 1.274 27 C 0.120 3.880 28 C -0.169 4.169 29 C -0.034 4.034 30 H 0.046 0.954 31 H 0.080 0.920 32 H 0.056 0.944 33 H 0.050 0.950 34 H 0.084 0.916 35 H 0.041 0.959 36 H 0.068 0.932 37 H 0.114 0.886 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.110 0.890 43 H 0.094 0.906 44 H 0.039 0.961 45 H 0.027 0.973 46 H 0.372 0.628 47 H 0.251 0.749 48 H 0.068 0.932 49 H 0.051 0.949 50 H 0.071 0.929 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.005 11.974 -32.441 34.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.064 4.064 3 C -0.201 4.201 4 C -0.143 4.143 5 C -0.072 4.072 6 C -0.080 4.080 7 O 0.062 5.938 8 N -0.042 5.042 9 C -0.193 4.193 10 C 0.386 3.614 11 O -0.437 6.437 12 N -0.337 5.337 13 C -0.013 4.013 14 C -0.148 4.148 15 C -0.114 4.114 16 H 0.095 0.905 17 C 0.039 3.961 18 N -0.391 5.391 19 C -0.377 4.377 20 H 0.098 0.902 21 C -0.272 4.272 22 N -0.623 5.623 23 Si 0.805 3.195 24 H -0.204 1.204 25 H -0.224 1.224 26 H -0.200 1.200 27 C -0.002 4.002 28 C -0.175 4.175 29 C -0.072 4.072 30 H 0.065 0.935 31 H 0.099 0.901 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.102 0.898 35 H 0.060 0.940 36 H 0.087 0.913 37 H 0.132 0.868 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.100 0.900 41 H 0.095 0.905 42 H 0.129 0.871 43 H 0.112 0.888 44 H 0.057 0.943 45 H 0.045 0.955 46 H 0.203 0.797 47 H 0.059 0.941 48 H 0.086 0.914 49 H 0.070 0.930 50 H 0.090 0.910 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.728 11.822 -31.624 33.770 hybrid contribution -1.212 -0.419 1.805 2.214 sum -0.484 11.402 -29.819 31.929 Atomic orbital electron populations 1.21838 0.92959 1.02272 1.02604 1.20724 0.96549 0.95659 0.93444 1.21958 1.00839 0.94731 1.02527 1.21775 0.92998 1.01327 0.98168 1.20640 0.93986 1.05184 0.87372 1.24811 0.82203 1.01102 0.99845 1.84652 1.27853 1.61964 1.19320 1.74626 1.21954 1.17065 0.90540 1.22755 0.91781 1.08992 0.95726 1.16903 0.83441 0.77239 0.83787 1.90778 1.24491 1.53549 1.74928 1.48490 1.08980 1.67048 1.09202 1.22248 0.78759 1.02463 0.97812 1.22688 0.96730 1.02766 0.92655 1.22444 0.94416 0.99019 0.95547 0.90459 1.20740 0.92680 0.95460 0.87212 1.42624 1.28561 1.64827 1.03112 1.19634 1.06648 1.27235 0.84203 0.90191 1.25646 0.97494 1.01242 1.02773 1.69837 1.15493 1.41478 1.35507 0.85164 0.76875 0.77603 0.79832 1.20367 1.22353 1.20011 1.22256 0.99475 0.99485 0.78953 1.20829 0.99068 1.06528 0.91041 1.20100 0.86874 1.00897 0.99319 0.93491 0.90112 0.92473 0.93083 0.89761 0.94007 0.91314 0.86761 0.86065 0.86208 0.90004 0.90490 0.87123 0.88755 0.94349 0.95480 0.79691 0.94063 0.91384 0.93026 0.91043 0.92111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 8.44 71.98 0.61 -0.90 16 2 C -0.06 -0.78 0.77 -51.96 -0.04 -0.82 16 3 C -0.14 -1.65 7.73 71.98 0.56 -1.09 16 4 C -0.11 -0.71 4.82 30.77 0.15 -0.56 16 5 C -0.03 -0.22 5.66 29.96 0.17 -0.05 16 6 C -0.02 -0.25 6.65 24.99 0.17 -0.08 16 7 O 0.14 2.72 11.18 78.73 0.88 3.60 16 8 N -0.34 -8.56 9.79 -48.95 -0.48 -9.03 16 9 C -0.04 -1.06 7.01 42.55 0.30 -0.77 16 10 C 0.60 21.46 7.88 86.93 0.68 22.14 16 11 O -0.56 -23.77 16.34 -3.69 -0.06 -23.83 16 12 N -0.60 -19.96 3.33 -814.19 -2.71 -22.67 16 13 C 0.11 2.73 5.56 86.73 0.48 3.22 16 14 C -0.11 -2.55 6.41 31.78 0.20 -2.35 16 15 C -0.09 -3.09 3.06 -9.33 -0.03 -3.12 16 16 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 17 C 0.17 6.50 5.72 86.38 0.49 7.00 16 18 N -0.75 -38.99 5.55 -343.48 -1.91 -40.90 16 19 C -0.25 -13.98 9.99 84.03 0.84 -13.14 16 20 H 0.08 4.30 7.83 -2.91 -0.02 4.27 16 21 C -0.08 -4.70 5.50 84.86 0.47 -4.23 16 22 N -0.97 -61.75 13.06 21.65 0.28 -61.47 16 23 Si 0.98 47.21 29.55 68.60 2.03 49.24 16 24 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 25 H -0.30 -14.53 7.11 99.48 0.71 -13.83 16 26 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 27 C 0.12 4.41 6.34 86.93 0.55 4.96 16 28 C -0.17 -3.95 5.59 -20.06 -0.11 -4.06 16 29 C -0.03 -0.74 4.41 29.83 0.13 -0.61 16 30 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.08 0.53 8.14 -2.38 -0.02 0.51 16 32 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.05 0.64 5.67 -2.39 -0.01 0.63 16 34 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.04 0.61 8.14 -2.39 -0.02 0.60 16 36 H 0.07 0.56 8.12 -2.39 -0.02 0.54 16 37 H 0.11 0.15 8.11 -2.39 -0.02 0.13 16 38 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16 39 H 0.12 0.34 6.99 -2.39 -0.02 0.32 16 40 H 0.08 1.89 7.80 -2.38 -0.02 1.88 16 41 H 0.08 1.86 7.70 -2.39 -0.02 1.85 16 42 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.09 1.96 8.04 -2.39 -0.02 1.94 16 44 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.03 1.06 7.97 -2.39 -0.02 1.04 16 46 H 0.37 20.97 7.67 -92.70 -0.71 20.26 16 47 H 0.25 15.47 8.31 -92.71 -0.77 14.70 16 48 H 0.07 2.54 7.91 -2.39 -0.02 2.52 16 49 H 0.05 2.23 8.03 -2.39 -0.02 2.21 16 50 H 0.07 1.65 8.12 -2.39 -0.02 1.63 16 51 H 0.06 1.63 7.81 -2.39 -0.02 1.62 16 Total: -1.00 -76.65 401.02 3.88 -72.77 By element: Atomic # 1 Polarization: 26.54 SS G_CDS: 0.22 Total: 26.77 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: 5.62 Total: 5.53 kcal Atomic # 7 Polarization: -129.26 SS G_CDS: -4.81 Total: -134.08 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: 0.82 Total: -20.23 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 2.03 Total: 49.24 kcal Total: -76.65 3.88 -72.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266002423.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.654 kcal (2) G-P(sol) polarization free energy of solvation -76.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds