Wall clock time and date at job start Wed Apr 1 2020 04:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86802 * 120.00210 * 2 1 4 4 H 1.48491 * 109.47276 * 270.00176 * 3 2 1 5 5 H 1.48498 * 109.47104 * 30.00149 * 3 2 1 6 6 H 1.48501 * 109.47381 * 149.99973 * 3 2 1 7 7 C 1.38819 * 120.00135 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00084 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99591 * 359.97438 * 7 2 1 10 10 C 1.46494 * 119.99956 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47517 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47636 * 179.97438 * 11 10 9 13 13 C 1.53038 * 109.46280 * 174.99982 * 12 11 10 14 14 C 1.53191 * 109.31261 * 181.38700 * 13 12 11 15 15 N 1.46926 * 108.77451 * 305.36750 * 14 13 12 16 16 C 1.34780 * 120.62707 * 233.58792 * 15 14 13 17 17 O 1.21280 * 120.00423 * 359.97438 * 16 15 14 18 18 C 1.50701 * 119.99795 * 180.02562 * 16 15 14 19 19 C 1.50703 * 109.47064 * 179.97438 * 18 16 15 20 20 C 1.35446 * 126.77976 * 90.00073 * 19 18 16 21 21 C 1.41376 * 103.98993 * 179.97438 * 20 19 18 22 22 C 1.50693 * 126.80420 * 180.02562 * 21 20 19 23 23 C 1.53002 * 117.50034 * 343.61966 * 22 21 20 24 24 C 1.53003 * 60.00038 * 252.50993 * 23 22 21 25 25 N 1.30172 * 106.39404 * 359.97438 * 21 20 19 26 26 O 1.20931 * 111.60473 * 359.72829 * 25 21 20 27 27 C 1.46921 * 118.74177 * 53.86188 * 15 14 13 28 28 C 1.53041 * 109.45914 * 295.07344 * 12 11 10 29 29 H 0.97001 * 119.99758 * 359.97438 * 1 2 3 30 30 H 0.97003 * 120.00097 * 359.97438 * 9 7 2 31 31 H 1.08995 * 109.47437 * 59.99701 * 10 9 7 32 32 H 1.09003 * 109.46874 * 300.00034 * 10 9 7 33 33 H 1.09006 * 109.46562 * 59.99857 * 11 10 9 34 34 H 1.09000 * 109.47015 * 300.00475 * 11 10 9 35 35 H 1.08999 * 109.45604 * 55.02689 * 12 11 10 36 36 H 1.09002 * 109.49670 * 61.43645 * 13 12 11 37 37 H 1.09002 * 109.52529 * 301.35851 * 13 12 11 38 38 H 1.09003 * 109.58572 * 185.57865 * 14 13 12 39 39 H 1.08992 * 109.70469 * 65.22435 * 14 13 12 40 40 H 1.09002 * 109.47060 * 299.99722 * 18 16 15 41 41 H 1.09001 * 109.47380 * 59.99809 * 18 16 15 42 42 H 1.08004 * 128.00359 * 359.97438 * 20 19 18 43 43 H 1.09005 * 115.55362 * 129.32824 * 22 21 20 44 44 H 1.09001 * 117.49632 * 359.97438 * 23 22 21 45 45 H 1.08998 * 117.50282 * 145.02160 * 23 22 21 46 46 H 1.09000 * 117.49974 * 252.51049 * 24 23 22 47 47 H 1.09002 * 117.51721 * 107.47511 * 24 23 22 48 48 H 1.08998 * 109.58542 * 65.92391 * 27 15 14 49 49 H 1.08999 * 109.58977 * 186.35239 * 27 15 14 50 50 H 1.08999 * 109.49703 * 298.55892 * 28 12 11 51 51 H 1.08993 * 109.50252 * 58.62386 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 6 1.0637 -4.8197 0.0001 12 6 1.8287 -6.1448 -0.0005 13 6 0.8388 -7.3050 0.1259 14 6 1.6105 -8.6279 0.1597 15 7 2.4771 -8.7003 -1.0245 16 6 2.4231 -9.7637 -1.8509 17 8 1.6543 -10.6728 -1.6200 18 6 3.3189 -9.8235 -3.0613 19 6 3.0646 -11.1055 -3.8116 20 6 2.1643 -11.2990 -4.8049 21 6 2.3302 -12.6582 -5.1566 22 6 1.5747 -13.4146 -6.2186 23 6 0.2771 -12.7939 -6.7401 24 6 0.2256 -14.0219 -5.8288 25 7 3.2656 -13.1266 -4.3819 26 8 3.6895 -12.2777 -3.6322 27 6 3.4080 -7.5945 -1.2874 28 6 2.6122 -6.2805 -1.3081 29 1 -0.4850 0.8401 0.0004 30 1 0.3555 -2.3880 0.0002 31 1 2.6846 -3.7146 0.8894 32 1 2.6846 -3.7145 -0.8906 33 1 0.4367 -4.7621 -0.8897 34 1 0.4374 -4.7617 0.8903 35 1 2.5210 -6.1647 0.8411 36 1 0.1619 -7.3005 -0.7285 37 1 0.2643 -7.1952 1.0457 38 1 0.9078 -9.4612 0.1499 39 1 2.2201 -8.6748 1.0620 40 1 3.1087 -8.9740 -3.7112 41 1 4.3611 -9.7892 -2.7441 42 1 1.4785 -10.5810 -5.2299 43 1 2.1893 -13.9679 -6.9289 44 1 -0.0303 -11.8386 -6.3146 45 1 0.0378 -12.9386 -7.7936 46 1 -0.0476 -14.9744 -6.2828 47 1 -0.1153 -13.8746 -4.8040 48 1 4.1614 -7.5562 -0.5007 49 1 3.8917 -7.7455 -2.2524 50 1 1.9186 -6.2856 -2.1490 51 1 3.3000 -5.4410 -1.4090 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267909150.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:08 Heat of formation + Delta-G solvation = 51.199091 kcal Electronic energy + Delta-G solvation = -29659.775959 eV Core-core repulsion = 25563.149338 eV Total energy + Delta-G solvation = -4096.626621 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -45.19720 -40.51899 -38.11206 -37.94824 -35.39831 -34.14487 -33.62870 -33.21307 -31.56313 -31.01368 -29.14909 -28.11701 -25.10151 -24.96424 -23.61505 -23.28398 -22.96651 -22.39635 -21.41914 -20.53104 -20.05881 -19.19442 -18.12677 -17.51452 -17.23565 -16.98162 -16.34175 -15.94154 -15.86726 -14.96377 -14.81534 -14.74767 -14.41291 -14.26155 -14.11124 -13.88257 -13.74968 -13.47625 -13.22036 -13.00091 -12.71047 -12.56133 -12.43110 -12.24801 -11.99456 -11.85314 -11.44508 -11.41489 -11.33411 -11.19919 -11.04130 -10.82612 -10.82224 -10.66188 -10.37626 -10.30257 -10.20208 -10.04635 -9.96951 -9.69399 -9.59740 -8.91464 -8.86732 -6.92924 -5.78091 -3.06675 1.12709 1.87893 2.25329 2.55228 2.88317 3.24984 3.41755 3.46750 3.48689 3.71578 4.03758 4.13375 4.38007 4.46999 4.52588 4.54810 4.58306 4.67766 4.74579 4.75464 4.79186 4.87597 4.91127 5.08094 5.11810 5.16923 5.21424 5.31421 5.33127 5.41092 5.52038 5.55061 5.60498 5.63146 5.66120 5.66410 5.71693 5.76647 5.79141 5.96839 5.99222 6.11322 6.28837 6.32140 6.38508 6.41435 6.83915 6.88983 7.05526 7.67737 7.80780 7.99376 8.41102 9.51908 10.11209 10.45094 11.44886 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018395 B = 0.001639 C = 0.001602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.807408 B =17076.936233 C =17472.093138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.240 4.240 8 H 0.070 0.930 9 N -0.735 5.735 10 C 0.153 3.847 11 C -0.121 4.121 12 C -0.083 4.083 13 C -0.129 4.129 14 C 0.112 3.888 15 N -0.606 5.606 16 C 0.518 3.482 17 O -0.535 6.535 18 C -0.063 4.063 19 C -0.008 4.008 20 C -0.213 4.213 21 C 0.049 3.951 22 C -0.088 4.088 23 C -0.162 4.162 24 C -0.163 4.163 25 N -0.358 5.358 26 O 0.106 5.894 27 C 0.102 3.898 28 C -0.133 4.133 29 H 0.255 0.745 30 H 0.383 0.617 31 H 0.016 0.984 32 H 0.019 0.981 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.069 0.931 40 H 0.129 0.871 41 H 0.120 0.880 42 H 0.170 0.830 43 H 0.123 0.877 44 H 0.100 0.900 45 H 0.104 0.896 46 H 0.103 0.897 47 H 0.098 0.902 48 H 0.075 0.925 49 H 0.084 0.916 50 H 0.068 0.932 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.220 -26.129 -9.864 28.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.379 5.379 10 C 0.025 3.975 11 C -0.159 4.159 12 C -0.102 4.102 13 C -0.167 4.167 14 C -0.010 4.010 15 N -0.340 5.340 16 C 0.305 3.695 17 O -0.412 6.412 18 C -0.103 4.103 19 C -0.072 4.072 20 C -0.234 4.234 21 C -0.109 4.109 22 C -0.107 4.107 23 C -0.200 4.200 24 C -0.201 4.201 25 N -0.061 5.061 26 O 0.038 5.962 27 C -0.020 4.020 28 C -0.171 4.171 29 H 0.065 0.935 30 H 0.216 0.784 31 H 0.033 0.967 32 H 0.037 0.963 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.109 0.891 39 H 0.087 0.913 40 H 0.147 0.853 41 H 0.138 0.862 42 H 0.188 0.812 43 H 0.140 0.860 44 H 0.118 0.882 45 H 0.123 0.877 46 H 0.121 0.879 47 H 0.116 0.884 48 H 0.094 0.906 49 H 0.102 0.898 50 H 0.087 0.913 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 5.538 -27.701 -9.586 29.831 hybrid contribution -0.291 1.804 -0.201 1.838 sum 5.247 -25.897 -9.787 28.177 Atomic orbital electron populations 1.69658 1.05130 1.25636 1.57816 1.24752 0.95532 0.97725 1.03088 0.86189 0.78647 0.83845 0.77509 1.21733 1.21760 1.20768 1.19237 0.91012 0.84255 1.42614 0.91221 1.42388 1.05895 1.00138 1.89464 1.20696 0.93606 0.85620 0.97554 1.21762 0.98703 0.93307 1.02128 1.21084 0.96977 0.94554 0.97548 1.21986 0.98160 0.93554 1.02994 1.21661 0.93674 0.99084 0.86558 1.48110 1.40049 1.19667 1.26199 1.20203 0.83594 0.82013 0.83725 1.90747 1.39571 1.37056 1.73777 1.20185 1.02573 0.92046 0.95509 1.23525 0.96211 0.89398 0.98101 1.22273 1.03314 0.96933 1.00884 1.22566 0.97191 0.92626 0.98533 1.20101 0.89475 1.03223 0.97915 1.23036 0.98523 0.98197 1.00196 1.23033 0.97927 0.97928 1.01209 1.73796 1.14251 1.13262 1.04764 1.84821 1.49693 1.15099 1.46543 1.22021 0.91706 0.86262 1.02043 1.22140 0.99896 0.96413 0.98640 0.93523 0.78363 0.96658 0.96314 0.92045 0.91889 0.90917 0.91482 0.90471 0.89137 0.91285 0.85279 0.86164 0.81241 0.85964 0.88154 0.87725 0.87874 0.88372 0.90644 0.89757 0.91315 0.89513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.13 13.06 55.49 0.72 -27.41 16 2 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.17 29.55 -169.99 -5.02 17.15 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.73 -18.39 5.60 -59.91 -0.34 -18.72 16 10 C 0.15 2.89 6.01 -4.05 -0.02 2.86 16 11 C -0.12 -1.78 4.80 -26.73 -0.13 -1.91 16 12 C -0.08 -0.89 2.15 -90.58 -0.19 -1.08 16 13 C -0.13 -1.26 5.36 -26.61 -0.14 -1.41 16 14 C 0.11 1.06 6.43 -3.71 -0.02 1.03 16 15 N -0.61 -5.37 2.97 -172.51 -0.51 -5.88 16 16 C 0.52 5.21 7.69 -10.98 -0.08 5.13 16 17 O -0.53 -7.65 15.45 5.56 0.09 -7.56 16 18 C -0.06 -0.42 4.61 -29.03 -0.13 -0.55 16 19 C -0.01 -0.08 5.98 -35.30 -0.21 -0.29 16 20 C -0.21 -2.01 10.40 -39.38 -0.41 -2.42 16 21 C 0.05 0.52 6.95 -82.11 -0.57 -0.05 16 22 C -0.09 -0.71 6.33 -91.77 -0.58 -1.29 16 23 C -0.16 -0.99 10.04 -26.73 -0.27 -1.26 16 24 C -0.16 -1.16 10.23 -26.73 -0.27 -1.43 16 25 N -0.36 -4.50 12.07 33.42 0.40 -4.10 16 26 O 0.11 1.25 11.20 17.18 0.19 1.45 16 27 C 0.10 0.70 6.37 -3.49 -0.02 0.68 16 28 C -0.13 -1.22 5.16 -26.38 -0.14 -1.36 16 29 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.38 10.12 7.67 -40.82 -0.31 9.81 16 31 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.02 0.35 6.53 -51.93 -0.34 0.01 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.09 0.97 7.01 -51.93 -0.36 0.61 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.13 0.53 7.70 -51.93 -0.40 0.13 16 41 H 0.12 0.51 7.93 -51.93 -0.41 0.10 16 42 H 0.17 1.22 7.63 -52.48 -0.40 0.82 16 43 H 0.12 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.10 0.62 7.35 -51.93 -0.38 0.23 16 45 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 49 H 0.08 0.36 5.93 -51.93 -0.31 0.05 16 50 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 51 H 0.09 0.85 6.50 -51.93 -0.34 0.51 16 LS Contribution 411.47 15.07 6.20 6.20 Total: -1.00 -35.11 411.47 -10.01 -45.13 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -8.30 Total: 4.47 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: -3.45 Total: -10.70 kcal Atomic # 7 Polarization: -56.40 SS G_CDS: 0.28 Total: -56.12 kcal Atomic # 8 Polarization: -6.40 SS G_CDS: 0.28 Total: -6.12 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -35.11 -10.01 -45.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267909150.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.327 kcal (2) G-P(sol) polarization free energy of solvation -35.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds