Wall clock time and date at job start Wed Apr 1 2020 04:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86802 * 120.00210 * 2 1 4 4 H 1.48491 * 109.47276 * 270.00176 * 3 2 1 5 5 H 1.48498 * 109.47104 * 30.00149 * 3 2 1 6 6 H 1.48501 * 109.47381 * 149.99973 * 3 2 1 7 7 C 1.38819 * 120.00135 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00084 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99591 * 359.97438 * 7 2 1 10 10 C 1.46494 * 119.99956 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47517 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47636 * 179.97438 * 11 10 9 13 13 C 1.53038 * 109.46280 * 174.99982 * 12 11 10 14 14 C 1.53191 * 109.31261 * 181.38700 * 13 12 11 15 15 N 1.46926 * 108.77451 * 305.36750 * 14 13 12 16 16 C 1.34780 * 120.62707 * 233.58792 * 15 14 13 17 17 O 1.21280 * 120.00423 * 359.97438 * 16 15 14 18 18 C 1.50701 * 119.99795 * 180.02562 * 16 15 14 19 19 C 1.50703 * 109.47064 * 179.97438 * 18 16 15 20 20 C 1.35446 * 126.77976 * 90.00073 * 19 18 16 21 21 C 1.41376 * 103.98993 * 179.97438 * 20 19 18 22 22 C 1.50693 * 126.80420 * 180.02562 * 21 20 19 23 23 C 1.53002 * 117.50034 * 343.61966 * 22 21 20 24 24 C 1.53003 * 60.00038 * 252.50993 * 23 22 21 25 25 N 1.30172 * 106.39404 * 359.97438 * 21 20 19 26 26 O 1.20931 * 111.60473 * 359.72829 * 25 21 20 27 27 C 1.46921 * 118.74177 * 53.86188 * 15 14 13 28 28 C 1.53041 * 109.45914 * 295.07344 * 12 11 10 29 29 H 0.97001 * 119.99758 * 359.97438 * 1 2 3 30 30 H 0.97003 * 120.00097 * 359.97438 * 9 7 2 31 31 H 1.08995 * 109.47437 * 59.99701 * 10 9 7 32 32 H 1.09003 * 109.46874 * 300.00034 * 10 9 7 33 33 H 1.09006 * 109.46562 * 59.99857 * 11 10 9 34 34 H 1.09000 * 109.47015 * 300.00475 * 11 10 9 35 35 H 1.08999 * 109.45604 * 55.02689 * 12 11 10 36 36 H 1.09002 * 109.49670 * 61.43645 * 13 12 11 37 37 H 1.09002 * 109.52529 * 301.35851 * 13 12 11 38 38 H 1.09003 * 109.58572 * 185.57865 * 14 13 12 39 39 H 1.08992 * 109.70469 * 65.22435 * 14 13 12 40 40 H 1.09002 * 109.47060 * 299.99722 * 18 16 15 41 41 H 1.09001 * 109.47380 * 59.99809 * 18 16 15 42 42 H 1.08004 * 128.00359 * 359.97438 * 20 19 18 43 43 H 1.09005 * 115.55362 * 129.32824 * 22 21 20 44 44 H 1.09001 * 117.49632 * 359.97438 * 23 22 21 45 45 H 1.08998 * 117.50282 * 145.02160 * 23 22 21 46 46 H 1.09000 * 117.49974 * 252.51049 * 24 23 22 47 47 H 1.09002 * 117.51721 * 107.47511 * 24 23 22 48 48 H 1.08998 * 109.58542 * 65.92391 * 27 15 14 49 49 H 1.08999 * 109.58977 * 186.35239 * 27 15 14 50 50 H 1.08999 * 109.49703 * 298.55892 * 28 12 11 51 51 H 1.08993 * 109.50252 * 58.62386 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 6 1.0637 -4.8197 0.0001 12 6 1.8287 -6.1448 -0.0005 13 6 0.8388 -7.3050 0.1259 14 6 1.6105 -8.6279 0.1597 15 7 2.4771 -8.7003 -1.0245 16 6 2.4231 -9.7637 -1.8509 17 8 1.6543 -10.6728 -1.6200 18 6 3.3189 -9.8235 -3.0613 19 6 3.0646 -11.1055 -3.8116 20 6 2.1643 -11.2990 -4.8049 21 6 2.3302 -12.6582 -5.1566 22 6 1.5747 -13.4146 -6.2186 23 6 0.2771 -12.7939 -6.7401 24 6 0.2256 -14.0219 -5.8288 25 7 3.2656 -13.1266 -4.3819 26 8 3.6895 -12.2777 -3.6322 27 6 3.4080 -7.5945 -1.2874 28 6 2.6122 -6.2805 -1.3081 29 1 -0.4850 0.8401 0.0004 30 1 0.3555 -2.3880 0.0002 31 1 2.6846 -3.7146 0.8894 32 1 2.6846 -3.7145 -0.8906 33 1 0.4367 -4.7621 -0.8897 34 1 0.4374 -4.7617 0.8903 35 1 2.5210 -6.1647 0.8411 36 1 0.1619 -7.3005 -0.7285 37 1 0.2643 -7.1952 1.0457 38 1 0.9078 -9.4612 0.1499 39 1 2.2201 -8.6748 1.0620 40 1 3.1087 -8.9740 -3.7112 41 1 4.3611 -9.7892 -2.7441 42 1 1.4785 -10.5810 -5.2299 43 1 2.1893 -13.9679 -6.9289 44 1 -0.0303 -11.8386 -6.3146 45 1 0.0378 -12.9386 -7.7936 46 1 -0.0476 -14.9744 -6.2828 47 1 -0.1153 -13.8746 -4.8040 48 1 4.1614 -7.5562 -0.5007 49 1 3.8917 -7.7455 -2.2524 50 1 1.9186 -6.2856 -2.1490 51 1 3.3000 -5.4410 -1.4090 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267909150.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:07 Heat of formation + Delta-G solvation = 30.345552 kcal Electronic energy + Delta-G solvation = -29660.680236 eV Core-core repulsion = 25563.149338 eV Total energy + Delta-G solvation = -4097.530898 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -45.96663 -41.28175 -39.02499 -38.52214 -36.86431 -35.09325 -34.73867 -33.98661 -32.99089 -32.06562 -30.17161 -29.20237 -26.48854 -25.66288 -24.68979 -24.24561 -23.83689 -23.01768 -22.59124 -21.55293 -20.81005 -19.91474 -19.11852 -18.85806 -18.25910 -17.92994 -17.00793 -16.68939 -16.65508 -16.49878 -15.82890 -15.54647 -15.44979 -15.32892 -15.08513 -14.86475 -14.82154 -14.55651 -14.25889 -14.09834 -13.82675 -13.26706 -13.14237 -13.01410 -12.97312 -12.81915 -12.57100 -12.47086 -12.44282 -12.28168 -12.14033 -12.07114 -12.06338 -11.93653 -11.59770 -11.39212 -11.36252 -11.15950 -11.03462 -10.85650 -10.71349 -10.34603 -9.65983 -8.96451 -7.93654 -5.22252 0.39158 1.15554 1.48958 1.50663 1.53254 1.59123 1.89094 2.21439 2.57835 2.68154 3.09949 3.40252 3.40906 3.51667 3.72862 3.81873 3.84111 3.91415 3.95848 4.04170 4.07942 4.16865 4.24349 4.25243 4.33277 4.39403 4.43554 4.53837 4.60954 4.63885 4.65601 4.68401 4.72525 4.83894 4.87419 4.90784 4.95421 5.01726 5.04374 5.06866 5.09946 5.14585 5.17381 5.27902 5.34163 5.43258 5.52047 5.59134 5.63117 6.29259 6.36532 7.08201 7.24274 7.34823 8.13480 8.34465 9.30171 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018395 B = 0.001639 C = 0.001602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.807408 B =17076.936233 C =17472.093138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.079 4.079 3 Si 0.974 3.026 4 H -0.286 1.286 5 H -0.297 1.297 6 H -0.268 1.268 7 C -0.244 4.244 8 H 0.078 0.922 9 N -0.751 5.751 10 C 0.151 3.849 11 C -0.109 4.109 12 C -0.075 4.075 13 C -0.121 4.121 14 C 0.114 3.886 15 N -0.603 5.603 16 C 0.515 3.485 17 O -0.586 6.586 18 C -0.057 4.057 19 C -0.011 4.011 20 C -0.221 4.221 21 C 0.041 3.959 22 C -0.106 4.106 23 C -0.144 4.144 24 C -0.168 4.168 25 N -0.394 5.394 26 O 0.087 5.913 27 C 0.104 3.896 28 C -0.132 4.132 29 H 0.250 0.750 30 H 0.371 0.629 31 H 0.017 0.983 32 H 0.031 0.969 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.080 0.920 36 H 0.056 0.944 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.082 0.918 40 H 0.164 0.836 41 H 0.152 0.848 42 H 0.190 0.810 43 H 0.130 0.870 44 H 0.100 0.900 45 H 0.127 0.873 46 H 0.120 0.880 47 H 0.079 0.921 48 H 0.091 0.909 49 H 0.119 0.881 50 H 0.063 0.937 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.969 -25.944 -10.885 28.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.271 4.271 3 Si 0.803 3.197 4 H -0.213 1.213 5 H -0.224 1.224 6 H -0.193 1.193 7 C -0.376 4.376 8 H 0.096 0.904 9 N -0.394 5.394 10 C 0.025 3.975 11 C -0.147 4.147 12 C -0.094 4.094 13 C -0.159 4.159 14 C -0.008 4.008 15 N -0.336 5.336 16 C 0.304 3.696 17 O -0.467 6.467 18 C -0.097 4.097 19 C -0.075 4.075 20 C -0.243 4.243 21 C -0.117 4.117 22 C -0.125 4.125 23 C -0.182 4.182 24 C -0.206 4.206 25 N -0.100 5.100 26 O 0.022 5.978 27 C -0.018 4.018 28 C -0.170 4.170 29 H 0.059 0.941 30 H 0.202 0.798 31 H 0.035 0.965 32 H 0.049 0.951 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.099 0.901 36 H 0.075 0.925 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.100 0.900 40 H 0.181 0.819 41 H 0.170 0.830 42 H 0.208 0.792 43 H 0.148 0.852 44 H 0.118 0.882 45 H 0.145 0.855 46 H 0.138 0.862 47 H 0.098 0.902 48 H 0.109 0.891 49 H 0.137 0.863 50 H 0.082 0.918 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 7.351 -27.515 -10.595 30.387 hybrid contribution -0.853 1.711 0.149 1.917 sum 6.497 -25.804 -10.447 28.587 Atomic orbital electron populations 1.69821 1.06711 1.26018 1.59718 1.25603 0.96405 1.01250 1.03869 0.85127 0.77724 0.79373 0.77472 1.21316 1.22396 1.19260 1.19683 0.91608 0.85424 1.40917 0.90393 1.42680 1.05656 1.01623 1.89418 1.20909 0.94250 0.84541 0.97827 1.21635 0.97908 0.93983 1.01184 1.21014 0.96947 0.92319 0.99102 1.21881 0.97836 0.93488 1.02679 1.21580 0.93799 0.97875 0.87586 1.48195 1.39900 1.19908 1.25575 1.20752 0.83219 0.81364 0.84304 1.90735 1.41875 1.38967 1.75090 1.20397 1.03447 0.91535 0.94288 1.24101 0.95735 0.89630 0.98067 1.22624 1.03641 0.96886 1.01117 1.23090 0.96670 0.93481 0.98420 1.20272 0.90010 1.04265 0.97971 1.23146 0.96280 0.97591 1.01144 1.23074 0.97298 0.99457 1.00772 1.73777 1.15865 1.14300 1.06018 1.84764 1.50360 1.15845 1.46804 1.22202 0.91007 0.83932 1.04620 1.22105 0.99781 0.97851 0.97218 0.94091 0.79753 0.96459 0.95101 0.92949 0.92960 0.90118 0.92537 0.90314 0.90833 0.89953 0.81899 0.83036 0.79248 0.85225 0.88153 0.85493 0.86169 0.90200 0.89121 0.86334 0.91800 0.89703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.32 13.06 21.65 0.28 -59.04 16 2 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 3 Si 0.97 45.39 29.55 68.60 2.03 47.42 16 4 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 5 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 6 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 7 C -0.24 -13.45 9.99 84.04 0.84 -12.61 16 8 H 0.08 4.07 7.83 -2.91 -0.02 4.04 16 9 N -0.75 -37.55 5.60 -343.47 -1.92 -39.48 16 10 C 0.15 5.53 6.01 86.38 0.52 6.04 16 11 C -0.11 -3.13 4.80 30.59 0.15 -2.98 16 12 C -0.07 -1.47 2.15 -10.77 -0.02 -1.49 16 13 C -0.12 -2.23 5.36 30.67 0.16 -2.07 16 14 C 0.11 1.99 6.43 86.36 0.56 2.55 16 15 N -0.60 -9.21 2.97 -818.07 -2.43 -11.63 16 16 C 0.51 9.41 7.69 87.66 0.67 10.09 16 17 O -0.59 -16.71 15.45 -3.03 -0.05 -16.76 16 18 C -0.06 -0.59 4.61 29.10 0.13 -0.45 16 19 C -0.01 -0.20 5.98 25.04 0.15 -0.05 16 20 C -0.22 -3.98 10.40 22.40 0.23 -3.75 16 21 C 0.04 0.88 6.95 43.58 0.30 1.18 16 22 C -0.11 -1.66 6.33 -11.54 -0.07 -1.74 16 23 C -0.14 -1.55 10.04 30.60 0.31 -1.24 16 24 C -0.17 -2.30 10.23 30.60 0.31 -1.99 16 25 N -0.39 -10.13 12.07 -49.55 -0.60 -10.73 16 26 O 0.09 2.06 11.20 71.64 0.80 2.86 16 27 C 0.10 1.01 6.37 86.51 0.55 1.56 16 28 C -0.13 -2.04 5.16 30.82 0.16 -1.88 16 29 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 30 H 0.37 19.96 7.67 -92.71 -0.71 19.25 16 31 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.03 1.08 6.53 -2.39 -0.02 1.07 16 33 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 34 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.07 1.58 7.01 -2.39 -0.02 1.56 16 39 H 0.08 1.23 8.14 -2.39 -0.02 1.22 16 40 H 0.16 0.59 7.70 -2.39 -0.02 0.57 16 41 H 0.15 0.64 7.93 -2.39 -0.02 0.62 16 42 H 0.19 2.40 7.63 -2.91 -0.02 2.38 16 43 H 0.13 1.76 8.14 -2.38 -0.02 1.74 16 44 H 0.10 1.08 7.35 -2.39 -0.02 1.06 16 45 H 0.13 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 47 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 48 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 49 H 0.12 0.39 5.93 -2.39 -0.01 0.37 16 50 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 51 H 0.08 1.39 6.50 -2.39 -0.02 1.38 16 Total: -1.00 -78.51 411.47 3.76 -74.75 By element: Atomic # 1 Polarization: 25.26 SS G_CDS: 0.22 Total: 25.49 kcal Atomic # 6 Polarization: -18.29 SS G_CDS: 5.42 Total: -12.87 kcal Atomic # 7 Polarization: -116.22 SS G_CDS: -4.67 Total: -120.88 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: 0.76 Total: -13.90 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -78.51 3.76 -74.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267909150.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.093 kcal (2) G-P(sol) polarization free energy of solvation -78.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds