Wall clock time and date at job start Wed Apr 1 2020 04:57:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31612 * 1
3 3 Si 1.86802 * 120.00210 * 2 1
4 4 H 1.48491 * 109.47276 * 270.00176 * 3 2 1
5 5 H 1.48498 * 109.47104 * 30.00149 * 3 2 1
6 6 H 1.48501 * 109.47381 * 149.99973 * 3 2 1
7 7 C 1.38819 * 120.00135 * 180.02562 * 2 1 3
8 8 H 1.07998 * 120.00084 * 180.02562 * 7 2 1
9 9 N 1.36937 * 119.99591 * 359.97438 * 7 2 1
10 10 C 1.46494 * 119.99956 * 180.02562 * 9 7 2
11 11 C 1.52996 * 109.47517 * 179.97438 * 10 9 7
12 12 C 1.52999 * 109.47636 * 179.97438 * 11 10 9
13 13 C 1.53038 * 109.46280 * 174.99982 * 12 11 10
14 14 C 1.53191 * 109.31261 * 181.38700 * 13 12 11
15 15 N 1.46926 * 108.77451 * 305.36750 * 14 13 12
16 16 C 1.34780 * 120.62707 * 233.58792 * 15 14 13
17 17 O 1.21280 * 120.00423 * 359.97438 * 16 15 14
18 18 C 1.50701 * 119.99795 * 180.02562 * 16 15 14
19 19 C 1.50703 * 109.47064 * 179.97438 * 18 16 15
20 20 C 1.35446 * 126.77976 * 90.00073 * 19 18 16
21 21 C 1.41376 * 103.98993 * 179.97438 * 20 19 18
22 22 C 1.50693 * 126.80420 * 180.02562 * 21 20 19
23 23 C 1.53002 * 117.50034 * 343.61966 * 22 21 20
24 24 C 1.53003 * 60.00038 * 252.50993 * 23 22 21
25 25 N 1.30172 * 106.39404 * 359.97438 * 21 20 19
26 26 O 1.20931 * 111.60473 * 359.72829 * 25 21 20
27 27 C 1.46921 * 118.74177 * 53.86188 * 15 14 13
28 28 C 1.53041 * 109.45914 * 295.07344 * 12 11 10
29 29 H 0.97001 * 119.99758 * 359.97438 * 1 2 3
30 30 H 0.97003 * 120.00097 * 359.97438 * 9 7 2
31 31 H 1.08995 * 109.47437 * 59.99701 * 10 9 7
32 32 H 1.09003 * 109.46874 * 300.00034 * 10 9 7
33 33 H 1.09006 * 109.46562 * 59.99857 * 11 10 9
34 34 H 1.09000 * 109.47015 * 300.00475 * 11 10 9
35 35 H 1.08999 * 109.45604 * 55.02689 * 12 11 10
36 36 H 1.09002 * 109.49670 * 61.43645 * 13 12 11
37 37 H 1.09002 * 109.52529 * 301.35851 * 13 12 11
38 38 H 1.09003 * 109.58572 * 185.57865 * 14 13 12
39 39 H 1.08992 * 109.70469 * 65.22435 * 14 13 12
40 40 H 1.09002 * 109.47060 * 299.99722 * 18 16 15
41 41 H 1.09001 * 109.47380 * 59.99809 * 18 16 15
42 42 H 1.08004 * 128.00359 * 359.97438 * 20 19 18
43 43 H 1.09005 * 115.55362 * 129.32824 * 22 21 20
44 44 H 1.09001 * 117.49632 * 359.97438 * 23 22 21
45 45 H 1.08998 * 117.50282 * 145.02160 * 23 22 21
46 46 H 1.09000 * 117.49974 * 252.51049 * 24 23 22
47 47 H 1.09002 * 117.51721 * 107.47511 * 24 23 22
48 48 H 1.08998 * 109.58542 * 65.92391 * 27 15 14
49 49 H 1.08999 * 109.58977 * 186.35239 * 27 15 14
50 50 H 1.08999 * 109.49703 * 298.55892 * 28 12 11
51 51 H 1.08993 * 109.50252 * 58.62386 * 28 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3161 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 2.4977 2.0464 -1.4000
5 1 1.4477 2.6527 0.7001
6 1 3.5478 1.4402 0.7000
7 6 2.0102 -1.2022 -0.0005
8 1 3.0902 -1.2022 -0.0001
9 7 1.3255 -2.3881 -0.0005
10 6 2.0579 -3.6568 -0.0005
11 6 1.0637 -4.8197 0.0001
12 6 1.8287 -6.1448 -0.0005
13 6 0.8388 -7.3050 0.1259
14 6 1.6105 -8.6279 0.1597
15 7 2.4771 -8.7003 -1.0245
16 6 2.4231 -9.7637 -1.8509
17 8 1.6543 -10.6728 -1.6200
18 6 3.3189 -9.8235 -3.0613
19 6 3.0646 -11.1055 -3.8116
20 6 2.1643 -11.2990 -4.8049
21 6 2.3302 -12.6582 -5.1566
22 6 1.5747 -13.4146 -6.2186
23 6 0.2771 -12.7939 -6.7401
24 6 0.2256 -14.0219 -5.8288
25 7 3.2656 -13.1266 -4.3819
26 8 3.6895 -12.2777 -3.6322
27 6 3.4080 -7.5945 -1.2874
28 6 2.6122 -6.2805 -1.3081
29 1 -0.4850 0.8401 0.0004
30 1 0.3555 -2.3880 0.0002
31 1 2.6846 -3.7146 0.8894
32 1 2.6846 -3.7145 -0.8906
33 1 0.4367 -4.7621 -0.8897
34 1 0.4374 -4.7617 0.8903
35 1 2.5210 -6.1647 0.8411
36 1 0.1619 -7.3005 -0.7285
37 1 0.2643 -7.1952 1.0457
38 1 0.9078 -9.4612 0.1499
39 1 2.2201 -8.6748 1.0620
40 1 3.1087 -8.9740 -3.7112
41 1 4.3611 -9.7892 -2.7441
42 1 1.4785 -10.5810 -5.2299
43 1 2.1893 -13.9679 -6.9289
44 1 -0.0303 -11.8386 -6.3146
45 1 0.0378 -12.9386 -7.7936
46 1 -0.0476 -14.9744 -6.2828
47 1 -0.1153 -13.8746 -4.8040
48 1 4.1614 -7.5562 -0.5007
49 1 3.8917 -7.7455 -2.2524
50 1 1.9186 -6.2856 -2.1490
51 1 3.3000 -5.4410 -1.4090
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001267909150.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:57:07
Heat of formation + Delta-G solvation = 30.345552 kcal
Electronic energy + Delta-G solvation = -29660.680236 eV
Core-core repulsion = 25563.149338 eV
Total energy + Delta-G solvation = -4097.530898 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.01 seconds
Orbital eigenvalues (eV)
-45.96663 -41.28175 -39.02499 -38.52214 -36.86431 -35.09325 -34.73867 -33.98661
-32.99089 -32.06562 -30.17161 -29.20237 -26.48854 -25.66288 -24.68979 -24.24561
-23.83689 -23.01768 -22.59124 -21.55293 -20.81005 -19.91474 -19.11852 -18.85806
-18.25910 -17.92994 -17.00793 -16.68939 -16.65508 -16.49878 -15.82890 -15.54647
-15.44979 -15.32892 -15.08513 -14.86475 -14.82154 -14.55651 -14.25889 -14.09834
-13.82675 -13.26706 -13.14237 -13.01410 -12.97312 -12.81915 -12.57100 -12.47086
-12.44282 -12.28168 -12.14033 -12.07114 -12.06338 -11.93653 -11.59770 -11.39212
-11.36252 -11.15950 -11.03462 -10.85650 -10.71349 -10.34603 -9.65983 -8.96451
-7.93654 -5.22252 0.39158 1.15554 1.48958 1.50663 1.53254 1.59123
1.89094 2.21439 2.57835 2.68154 3.09949 3.40252 3.40906 3.51667
3.72862 3.81873 3.84111 3.91415 3.95848 4.04170 4.07942 4.16865
4.24349 4.25243 4.33277 4.39403 4.43554 4.53837 4.60954 4.63885
4.65601 4.68401 4.72525 4.83894 4.87419 4.90784 4.95421 5.01726
5.04374 5.06866 5.09946 5.14585 5.17381 5.27902 5.34163 5.43258
5.52047 5.59134 5.63117 6.29259 6.36532 7.08201 7.24274 7.34823
8.13480 8.34465 9.30171
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.018395 B = 0.001639 C = 0.001602
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1521.807408 B =17076.936233 C =17472.093138
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.972 5.972
2 C -0.079 4.079
3 Si 0.974 3.026
4 H -0.286 1.286
5 H -0.297 1.297
6 H -0.268 1.268
7 C -0.244 4.244
8 H 0.078 0.922
9 N -0.751 5.751
10 C 0.151 3.849
11 C -0.109 4.109
12 C -0.075 4.075
13 C -0.121 4.121
14 C 0.114 3.886
15 N -0.603 5.603
16 C 0.515 3.485
17 O -0.586 6.586
18 C -0.057 4.057
19 C -0.011 4.011
20 C -0.221 4.221
21 C 0.041 3.959
22 C -0.106 4.106
23 C -0.144 4.144
24 C -0.168 4.168
25 N -0.394 5.394
26 O 0.087 5.913
27 C 0.104 3.896
28 C -0.132 4.132
29 H 0.250 0.750
30 H 0.371 0.629
31 H 0.017 0.983
32 H 0.031 0.969
33 H 0.052 0.948
34 H 0.052 0.948
35 H 0.080 0.920
36 H 0.056 0.944
37 H 0.078 0.922
38 H 0.073 0.927
39 H 0.082 0.918
40 H 0.164 0.836
41 H 0.152 0.848
42 H 0.190 0.810
43 H 0.130 0.870
44 H 0.100 0.900
45 H 0.127 0.873
46 H 0.120 0.880
47 H 0.079 0.921
48 H 0.091 0.909
49 H 0.119 0.881
50 H 0.063 0.937
51 H 0.085 0.915
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.969 -25.944 -10.885 28.985
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.623 5.623
2 C -0.271 4.271
3 Si 0.803 3.197
4 H -0.213 1.213
5 H -0.224 1.224
6 H -0.193 1.193
7 C -0.376 4.376
8 H 0.096 0.904
9 N -0.394 5.394
10 C 0.025 3.975
11 C -0.147 4.147
12 C -0.094 4.094
13 C -0.159 4.159
14 C -0.008 4.008
15 N -0.336 5.336
16 C 0.304 3.696
17 O -0.467 6.467
18 C -0.097 4.097
19 C -0.075 4.075
20 C -0.243 4.243
21 C -0.117 4.117
22 C -0.125 4.125
23 C -0.182 4.182
24 C -0.206 4.206
25 N -0.100 5.100
26 O 0.022 5.978
27 C -0.018 4.018
28 C -0.170 4.170
29 H 0.059 0.941
30 H 0.202 0.798
31 H 0.035 0.965
32 H 0.049 0.951
33 H 0.071 0.929
34 H 0.070 0.930
35 H 0.099 0.901
36 H 0.075 0.925
37 H 0.097 0.903
38 H 0.092 0.908
39 H 0.100 0.900
40 H 0.181 0.819
41 H 0.170 0.830
42 H 0.208 0.792
43 H 0.148 0.852
44 H 0.118 0.882
45 H 0.145 0.855
46 H 0.138 0.862
47 H 0.098 0.902
48 H 0.109 0.891
49 H 0.137 0.863
50 H 0.082 0.918
51 H 0.103 0.897
Dipole moment (debyes) X Y Z Total
from point charges 7.351 -27.515 -10.595 30.387
hybrid contribution -0.853 1.711 0.149 1.917
sum 6.497 -25.804 -10.447 28.587
Atomic orbital electron populations
1.69821 1.06711 1.26018 1.59718 1.25603 0.96405 1.01250 1.03869
0.85127 0.77724 0.79373 0.77472 1.21316 1.22396 1.19260 1.19683
0.91608 0.85424 1.40917 0.90393 1.42680 1.05656 1.01623 1.89418
1.20909 0.94250 0.84541 0.97827 1.21635 0.97908 0.93983 1.01184
1.21014 0.96947 0.92319 0.99102 1.21881 0.97836 0.93488 1.02679
1.21580 0.93799 0.97875 0.87586 1.48195 1.39900 1.19908 1.25575
1.20752 0.83219 0.81364 0.84304 1.90735 1.41875 1.38967 1.75090
1.20397 1.03447 0.91535 0.94288 1.24101 0.95735 0.89630 0.98067
1.22624 1.03641 0.96886 1.01117 1.23090 0.96670 0.93481 0.98420
1.20272 0.90010 1.04265 0.97971 1.23146 0.96280 0.97591 1.01144
1.23074 0.97298 0.99457 1.00772 1.73777 1.15865 1.14300 1.06018
1.84764 1.50360 1.15845 1.46804 1.22202 0.91007 0.83932 1.04620
1.22105 0.99781 0.97851 0.97218 0.94091 0.79753 0.96459 0.95101
0.92949 0.92960 0.90118 0.92537 0.90314 0.90833 0.89953 0.81899
0.83036 0.79248 0.85225 0.88153 0.85493 0.86169 0.90200 0.89121
0.86334 0.91800 0.89703
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.97 -59.32 13.06 21.65 0.28 -59.04 16
2 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16
3 Si 0.97 45.39 29.55 68.60 2.03 47.42 16
4 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16
5 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16
6 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16
7 C -0.24 -13.45 9.99 84.04 0.84 -12.61 16
8 H 0.08 4.07 7.83 -2.91 -0.02 4.04 16
9 N -0.75 -37.55 5.60 -343.47 -1.92 -39.48 16
10 C 0.15 5.53 6.01 86.38 0.52 6.04 16
11 C -0.11 -3.13 4.80 30.59 0.15 -2.98 16
12 C -0.07 -1.47 2.15 -10.77 -0.02 -1.49 16
13 C -0.12 -2.23 5.36 30.67 0.16 -2.07 16
14 C 0.11 1.99 6.43 86.36 0.56 2.55 16
15 N -0.60 -9.21 2.97 -818.07 -2.43 -11.63 16
16 C 0.51 9.41 7.69 87.66 0.67 10.09 16
17 O -0.59 -16.71 15.45 -3.03 -0.05 -16.76 16
18 C -0.06 -0.59 4.61 29.10 0.13 -0.45 16
19 C -0.01 -0.20 5.98 25.04 0.15 -0.05 16
20 C -0.22 -3.98 10.40 22.40 0.23 -3.75 16
21 C 0.04 0.88 6.95 43.58 0.30 1.18 16
22 C -0.11 -1.66 6.33 -11.54 -0.07 -1.74 16
23 C -0.14 -1.55 10.04 30.60 0.31 -1.24 16
24 C -0.17 -2.30 10.23 30.60 0.31 -1.99 16
25 N -0.39 -10.13 12.07 -49.55 -0.60 -10.73 16
26 O 0.09 2.06 11.20 71.64 0.80 2.86 16
27 C 0.10 1.01 6.37 86.51 0.55 1.56 16
28 C -0.13 -2.04 5.16 30.82 0.16 -1.88 16
29 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16
30 H 0.37 19.96 7.67 -92.71 -0.71 19.25 16
31 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16
32 H 0.03 1.08 6.53 -2.39 -0.02 1.07 16
33 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16
34 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16
35 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16
36 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16
37 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16
38 H 0.07 1.58 7.01 -2.39 -0.02 1.56 16
39 H 0.08 1.23 8.14 -2.39 -0.02 1.22 16
40 H 0.16 0.59 7.70 -2.39 -0.02 0.57 16
41 H 0.15 0.64 7.93 -2.39 -0.02 0.62 16
42 H 0.19 2.40 7.63 -2.91 -0.02 2.38 16
43 H 0.13 1.76 8.14 -2.38 -0.02 1.74 16
44 H 0.10 1.08 7.35 -2.39 -0.02 1.06 16
45 H 0.13 0.79 8.14 -2.39 -0.02 0.77 16
46 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16
47 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16
48 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16
49 H 0.12 0.39 5.93 -2.39 -0.01 0.37 16
50 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16
51 H 0.08 1.39 6.50 -2.39 -0.02 1.38 16
Total: -1.00 -78.51 411.47 3.76 -74.75
By element:
Atomic # 1 Polarization: 25.26 SS G_CDS: 0.22 Total: 25.49 kcal
Atomic # 6 Polarization: -18.29 SS G_CDS: 5.42 Total: -12.87 kcal
Atomic # 7 Polarization: -116.22 SS G_CDS: -4.67 Total: -120.88 kcal
Atomic # 8 Polarization: -14.65 SS G_CDS: 0.76 Total: -13.90 kcal
Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal
Total: -78.51 3.76 -74.75 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001267909150.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 105.093 kcal
(2) G-P(sol) polarization free energy of solvation -78.510 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.583 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.762 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.748 kcal
(6) G-S(sol) free energy of system = (1) + (5) 30.346 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.01 seconds