Wall clock time and date at job start Wed Apr 1 2020 04:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99954 * 2 1 4 4 H 1.48501 * 109.46998 * 270.00082 * 3 2 1 5 5 H 1.48495 * 109.47220 * 29.99966 * 3 2 1 6 6 H 1.48497 * 109.46889 * 150.00440 * 3 2 1 7 7 C 1.37881 * 119.99717 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00170 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99655 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.46922 * 179.97438 * 9 7 2 11 11 N 1.46494 * 109.47090 * 179.97438 * 10 9 7 12 12 C 1.34773 * 120.00051 * 180.02562 * 11 10 9 13 13 O 1.21283 * 120.00463 * 0.02562 * 12 11 10 14 14 C 1.50702 * 120.00155 * 179.97438 * 12 11 10 15 15 H 1.09001 * 115.56529 * 61.75631 * 14 12 11 16 16 C 1.53026 * 117.50362 * 207.46243 * 14 12 11 17 17 C 1.52816 * 117.50552 * 276.05409 * 14 12 11 18 18 C 1.53186 * 117.70949 * 0.13196 * 17 14 12 19 19 C 1.53349 * 108.76608 * 201.11588 * 18 17 14 20 20 N 1.46846 * 108.81601 * 308.69461 * 19 18 17 21 21 C 1.34777 * 120.38004 * 236.89850 * 20 19 18 22 22 O 1.21280 * 119.99941 * 0.02562 * 21 20 19 23 23 C 1.50701 * 120.00060 * 180.02562 * 21 20 19 24 24 H 1.08999 * 110.36899 * 42.17776 * 23 21 20 25 25 C 1.54689 * 110.32113 * 280.00030 * 23 21 20 26 26 C 1.54821 * 100.79606 * 217.14469 * 25 23 21 27 27 C 1.51260 * 103.78776 * 23.52760 * 26 25 23 28 28 N 1.27272 * 111.24049 * 344.07828 * 27 26 25 29 29 C 1.46838 * 119.23646 * 57.17246 * 20 19 18 30 30 C 1.53175 * 117.71637 * 144.89724 * 17 14 12 31 31 H 0.96994 * 119.99803 * 359.97438 * 1 2 3 32 32 H 1.08999 * 109.46906 * 59.99927 * 9 7 2 33 33 H 1.08996 * 109.46671 * 299.99547 * 9 7 2 34 34 H 1.09002 * 109.46740 * 60.00137 * 10 9 7 35 35 H 1.09002 * 109.47292 * 300.00329 * 10 9 7 36 36 H 0.97004 * 119.99955 * 0.02562 * 11 10 9 37 37 H 1.08991 * 117.50631 * 0.02562 * 16 14 12 38 38 H 1.09009 * 117.50423 * 214.95233 * 16 14 12 39 39 H 1.09007 * 109.58405 * 81.33674 * 18 17 14 40 40 H 1.08995 * 109.59004 * 320.90282 * 18 17 14 41 41 H 1.09004 * 109.57708 * 188.89988 * 19 18 17 42 42 H 1.08994 * 109.58184 * 68.49711 * 19 18 17 43 43 H 1.09001 * 111.15254 * 99.25493 * 25 23 21 44 44 H 1.09003 * 111.15187 * 335.02656 * 25 23 21 45 45 H 1.08998 * 110.56531 * 142.10843 * 26 25 23 46 46 H 1.09010 * 110.56222 * 264.95507 * 26 25 23 47 47 H 1.08001 * 124.37907 * 164.04070 * 27 26 25 48 48 H 1.08996 * 109.57800 * 62.62957 * 29 20 19 49 49 H 1.08999 * 109.57550 * 183.02636 * 29 20 19 50 50 H 1.08998 * 109.58831 * 278.66953 * 30 17 14 51 51 H 1.09004 * 109.59226 * 39.09695 * 30 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 7 5.4865 -2.6367 -0.0022 12 6 6.1603 -3.8038 -0.0028 13 8 5.5540 -4.8542 -0.0029 14 6 7.6673 -3.8039 -0.0046 15 1 8.1388 -3.3385 0.8610 16 6 8.3732 -5.0084 -0.6312 17 6 8.3715 -3.6612 -1.3533 18 6 7.4961 -3.5255 -2.6031 19 6 8.3245 -3.9221 -3.8311 20 7 9.5873 -3.1728 -3.8126 21 6 9.9327 -2.3932 -4.8564 22 8 9.1987 -2.3072 -5.8180 23 6 11.2310 -1.6285 -4.8286 24 1 12.0302 -2.2522 -4.4281 25 6 11.0786 -0.3420 -3.9833 26 6 11.9514 0.6446 -4.7969 27 6 11.9657 0.0506 -6.1879 28 7 11.5760 -1.1609 -6.1759 29 6 10.4722 -3.2874 -2.6464 30 6 9.6845 -2.8732 -1.3917 31 1 -0.4849 0.8400 0.0004 32 1 3.8752 -0.6805 0.8888 33 1 3.8744 -0.6801 -0.8912 34 1 3.6578 -3.1506 -0.8908 35 1 3.6585 -3.1503 0.8892 36 1 5.9715 -1.7966 -0.0025 37 1 7.7477 -5.8005 -1.0425 38 1 9.3092 -5.3353 -0.1779 39 1 7.1626 -2.4928 -2.7052 40 1 6.6318 -4.1841 -2.5171 41 1 7.7705 -3.6817 -4.7386 42 1 8.5337 -4.9913 -3.8009 43 1 11.4763 -0.4823 -2.9782 44 1 10.0398 -0.0134 -3.9508 45 1 11.4989 1.6361 -4.8085 46 1 12.9613 0.6884 -4.3889 47 1 12.2669 0.5856 -7.0764 48 1 10.8108 -4.3185 -2.5448 49 1 11.3318 -2.6295 -2.7742 50 1 9.4689 -1.8054 -1.4285 51 1 10.2723 -3.0989 -0.5019 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271516568.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:46 Heat of formation + Delta-G solvation = -25.364014 kcal Electronic energy + Delta-G solvation = -30822.758437 eV Core-core repulsion = 26722.811791 eV Total energy + Delta-G solvation = -4099.946646 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.14429 -40.16986 -38.86973 -37.78174 -35.61097 -34.93215 -32.79377 -32.08446 -30.93108 -30.50849 -30.08312 -29.13317 -25.67200 -24.44417 -24.01187 -23.26341 -22.42095 -21.13602 -20.80982 -20.01016 -19.47131 -18.50288 -17.90756 -17.02042 -16.82644 -16.53972 -16.06108 -15.49634 -15.44862 -15.27428 -15.10729 -14.66009 -14.29935 -14.18930 -14.06080 -13.94647 -13.57282 -13.36570 -13.26021 -12.91038 -12.77853 -12.64293 -12.60149 -12.31437 -12.16917 -12.14247 -11.88728 -11.58356 -11.51682 -11.23590 -11.07285 -10.65604 -10.52084 -10.42887 -10.23174 -10.17448 -10.08660 -9.98884 -9.73209 -9.51904 -9.31432 -8.90882 -8.66364 -8.55836 -6.12782 -4.13001 1.70740 2.29093 2.61998 2.76158 3.23618 3.30787 3.31917 3.35558 3.59551 3.73603 3.91630 4.05941 4.20176 4.33461 4.35852 4.38317 4.40875 4.49331 4.59201 4.69087 4.75418 4.85560 4.92898 4.97960 5.13730 5.13896 5.19086 5.20088 5.27569 5.28386 5.30178 5.44920 5.47503 5.51658 5.55053 5.72962 5.78404 5.81556 5.92501 5.98103 6.09285 6.17296 6.22061 6.52774 6.72328 7.01135 7.10754 7.15964 7.20268 7.64607 7.87798 7.90240 8.41511 8.54196 8.91566 9.47251 11.00322 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009694 B = 0.002671 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2887.704417 B =10479.733536 C =12347.455730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.069 3.931 3 Si 0.882 3.118 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.523 4.523 8 H 0.076 0.924 9 C -0.021 4.021 10 C 0.130 3.870 11 N -0.720 5.720 12 C 0.536 3.464 13 O -0.545 6.545 14 C -0.177 4.177 15 H 0.126 0.874 16 C -0.137 4.137 17 C -0.105 4.105 18 C -0.101 4.101 19 C 0.118 3.882 20 N -0.610 5.610 21 C 0.528 3.472 22 O -0.520 6.520 23 C 0.022 3.978 24 H 0.114 0.886 25 C -0.141 4.141 26 C -0.151 4.151 27 C 0.132 3.868 28 N -0.472 5.472 29 C 0.109 3.891 30 C -0.097 4.097 31 H 0.265 0.735 32 H 0.021 0.979 33 H 0.017 0.983 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.396 0.604 37 H 0.105 0.895 38 H 0.101 0.899 39 H 0.075 0.925 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.071 0.929 43 H 0.091 0.909 44 H 0.083 0.917 45 H 0.091 0.909 46 H 0.094 0.906 47 H 0.178 0.822 48 H 0.075 0.925 49 H 0.084 0.916 50 H 0.076 0.924 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.168 -1.499 -5.187 32.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.133 4.133 3 Si 0.709 3.291 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.562 4.562 8 H 0.094 0.906 9 C -0.059 4.059 10 C 0.008 3.992 11 N -0.370 5.370 12 C 0.321 3.679 13 O -0.423 6.423 14 C -0.198 4.198 15 H 0.144 0.856 16 C -0.174 4.174 17 C -0.106 4.106 18 C -0.139 4.139 19 C -0.004 4.004 20 N -0.345 5.345 21 C 0.314 3.686 22 O -0.394 6.394 23 C -0.091 4.091 24 H 0.131 0.869 25 C -0.180 4.180 26 C -0.191 4.191 27 C -0.082 4.082 28 N -0.178 5.178 29 C -0.014 4.014 30 C -0.135 4.135 31 H 0.075 0.925 32 H 0.039 0.961 33 H 0.035 0.965 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.229 0.771 37 H 0.124 0.876 38 H 0.120 0.880 39 H 0.094 0.906 40 H 0.101 0.899 41 H 0.114 0.886 42 H 0.089 0.911 43 H 0.109 0.891 44 H 0.102 0.898 45 H 0.110 0.890 46 H 0.112 0.888 47 H 0.195 0.805 48 H 0.093 0.907 49 H 0.103 0.897 50 H 0.094 0.906 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 30.902 -3.007 -6.257 31.672 hybrid contribution 0.583 1.917 1.017 2.247 sum 31.485 -1.090 -5.239 31.937 Atomic orbital electron populations 1.69902 1.06286 1.27069 1.50355 1.25002 0.94764 0.99135 0.94358 0.86755 0.80232 0.83588 0.78527 1.20200 1.21233 1.19133 1.20916 0.88641 0.94896 1.51717 0.90625 1.19782 0.98018 0.91309 0.96760 1.21518 0.75998 1.00148 1.01584 1.46285 1.09035 1.07843 1.73810 1.19540 0.87876 0.84103 0.76344 1.90695 1.69936 1.31526 1.50175 1.22409 0.92858 1.06169 0.98358 0.85590 1.23075 1.01564 0.91222 1.01553 1.21464 0.96978 1.00221 0.91900 1.21589 0.97192 1.03269 0.91891 1.21571 0.84019 0.95382 0.99419 1.48010 1.21736 1.46726 1.17991 1.20116 0.87210 0.78979 0.82259 1.90724 1.52712 1.63023 1.32963 1.22954 0.96781 0.98116 0.91202 0.86893 1.23071 1.01995 0.93479 0.99479 1.22578 1.01311 1.01062 0.94113 1.26813 0.91509 0.91994 0.97896 1.72805 1.10021 1.14505 1.20433 1.21868 0.92420 1.02325 0.84795 1.21654 0.93956 1.00190 0.97723 0.92527 0.96068 0.96490 0.91996 0.91950 0.77089 0.87620 0.88036 0.90617 0.89890 0.88606 0.91062 0.89055 0.89836 0.89027 0.88807 0.80543 0.90681 0.89731 0.90583 0.90082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.40 13.96 55.43 0.77 -26.63 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 21.06 27.47 -169.99 -4.67 16.39 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.27 -5.99 6.54 56.52 0.37 -5.62 16 7 C -0.52 -14.68 9.66 -34.44 -0.33 -15.01 16 8 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 9 C -0.02 -0.48 4.16 -27.88 -0.12 -0.59 16 10 C 0.13 2.63 5.61 -4.04 -0.02 2.60 16 11 N -0.72 -11.53 5.56 -60.29 -0.33 -11.86 16 12 C 0.54 8.34 6.09 -10.99 -0.07 8.27 16 13 O -0.55 -10.75 16.61 5.56 0.09 -10.65 16 14 C -0.18 -1.87 5.90 -91.85 -0.54 -2.41 16 15 H 0.13 1.08 8.14 -51.93 -0.42 0.66 16 16 C -0.14 -1.25 9.45 -26.79 -0.25 -1.50 16 17 C -0.10 -0.92 1.94 -154.49 -0.30 -1.21 16 18 C -0.10 -1.10 5.23 -26.45 -0.14 -1.24 16 19 C 0.12 1.23 6.44 -3.67 -0.02 1.20 16 20 N -0.61 -5.66 2.91 -172.41 -0.50 -6.16 16 21 C 0.53 6.16 6.90 -10.98 -0.08 6.08 16 22 O -0.52 -8.55 15.93 5.56 0.09 -8.46 16 23 C 0.02 0.19 2.96 -68.07 -0.20 -0.01 16 24 H 0.11 0.71 6.88 -51.93 -0.36 0.36 16 25 C -0.14 -0.84 6.35 -24.88 -0.16 -1.00 16 26 C -0.15 -0.66 6.90 -26.65 -0.18 -0.84 16 27 C 0.13 0.84 12.06 -13.89 -0.17 0.67 16 28 N -0.47 -4.79 10.60 -52.30 -0.55 -5.34 16 29 C 0.11 0.62 6.23 -3.42 -0.02 0.59 16 30 C -0.10 -0.57 5.85 -26.21 -0.15 -0.72 16 31 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 32 H 0.02 0.47 7.20 -51.93 -0.37 0.10 16 33 H 0.02 0.38 7.57 -51.93 -0.39 -0.02 16 34 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.40 5.35 8.47 -40.82 -0.35 5.01 16 37 H 0.11 1.16 7.93 -51.93 -0.41 0.75 16 38 H 0.10 0.68 8.14 -51.92 -0.42 0.25 16 39 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.08 1.07 7.36 -51.93 -0.38 0.68 16 41 H 0.10 1.20 6.96 -51.93 -0.36 0.84 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.09 0.32 7.58 -51.93 -0.39 -0.07 16 44 H 0.08 0.66 7.90 -51.93 -0.41 0.24 16 45 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.09 0.24 8.14 -51.92 -0.42 -0.18 16 47 H 0.18 0.58 8.06 -52.49 -0.42 0.16 16 48 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 49 H 0.08 0.31 4.85 -51.93 -0.25 0.06 16 50 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 51 H 0.08 0.33 8.10 -51.93 -0.42 -0.09 16 LS Contribution 407.58 15.07 6.14 6.14 Total: -1.00 -37.52 407.58 -10.16 -47.67 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -8.34 Total: 2.13 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: -2.85 Total: -3.23 kcal Atomic # 7 Polarization: -49.38 SS G_CDS: -0.62 Total: -50.00 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: 0.18 Total: -19.12 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.67 Total: 16.39 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -37.52 -10.16 -47.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271516568.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.310 kcal (2) G-P(sol) polarization free energy of solvation -37.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds