Wall clock time and date at job start Wed Apr 1 2020 04:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99954 * 2 1 4 4 H 1.48501 * 109.46998 * 270.00082 * 3 2 1 5 5 H 1.48495 * 109.47220 * 29.99966 * 3 2 1 6 6 H 1.48497 * 109.46889 * 150.00440 * 3 2 1 7 7 C 1.37881 * 119.99717 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00170 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99655 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.46922 * 179.97438 * 9 7 2 11 11 N 1.46494 * 109.47090 * 179.97438 * 10 9 7 12 12 C 1.34773 * 120.00051 * 180.02562 * 11 10 9 13 13 O 1.21283 * 120.00463 * 0.02562 * 12 11 10 14 14 C 1.50702 * 120.00155 * 179.97438 * 12 11 10 15 15 H 1.09001 * 115.56529 * 61.75631 * 14 12 11 16 16 C 1.53026 * 117.50362 * 207.46243 * 14 12 11 17 17 C 1.52816 * 117.50552 * 276.05409 * 14 12 11 18 18 C 1.53186 * 117.70949 * 0.13196 * 17 14 12 19 19 C 1.53349 * 108.76608 * 201.11588 * 18 17 14 20 20 N 1.46846 * 108.81601 * 308.69461 * 19 18 17 21 21 C 1.34777 * 120.38004 * 236.89850 * 20 19 18 22 22 O 1.21280 * 119.99941 * 0.02562 * 21 20 19 23 23 C 1.50701 * 120.00060 * 180.02562 * 21 20 19 24 24 H 1.08999 * 110.36899 * 42.17776 * 23 21 20 25 25 C 1.54689 * 110.32113 * 280.00030 * 23 21 20 26 26 C 1.54821 * 100.79606 * 217.14469 * 25 23 21 27 27 C 1.51260 * 103.78776 * 23.52760 * 26 25 23 28 28 N 1.27272 * 111.24049 * 344.07828 * 27 26 25 29 29 C 1.46838 * 119.23646 * 57.17246 * 20 19 18 30 30 C 1.53175 * 117.71637 * 144.89724 * 17 14 12 31 31 H 0.96994 * 119.99803 * 359.97438 * 1 2 3 32 32 H 1.08999 * 109.46906 * 59.99927 * 9 7 2 33 33 H 1.08996 * 109.46671 * 299.99547 * 9 7 2 34 34 H 1.09002 * 109.46740 * 60.00137 * 10 9 7 35 35 H 1.09002 * 109.47292 * 300.00329 * 10 9 7 36 36 H 0.97004 * 119.99955 * 0.02562 * 11 10 9 37 37 H 1.08991 * 117.50631 * 0.02562 * 16 14 12 38 38 H 1.09009 * 117.50423 * 214.95233 * 16 14 12 39 39 H 1.09007 * 109.58405 * 81.33674 * 18 17 14 40 40 H 1.08995 * 109.59004 * 320.90282 * 18 17 14 41 41 H 1.09004 * 109.57708 * 188.89988 * 19 18 17 42 42 H 1.08994 * 109.58184 * 68.49711 * 19 18 17 43 43 H 1.09001 * 111.15254 * 99.25493 * 25 23 21 44 44 H 1.09003 * 111.15187 * 335.02656 * 25 23 21 45 45 H 1.08998 * 110.56531 * 142.10843 * 26 25 23 46 46 H 1.09010 * 110.56222 * 264.95507 * 26 25 23 47 47 H 1.08001 * 124.37907 * 164.04070 * 27 26 25 48 48 H 1.08996 * 109.57800 * 62.62957 * 29 20 19 49 49 H 1.08999 * 109.57550 * 183.02636 * 29 20 19 50 50 H 1.08998 * 109.58831 * 278.66953 * 30 17 14 51 51 H 1.09004 * 109.59226 * 39.09695 * 30 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 7 5.4865 -2.6367 -0.0022 12 6 6.1603 -3.8038 -0.0028 13 8 5.5540 -4.8542 -0.0029 14 6 7.6673 -3.8039 -0.0046 15 1 8.1388 -3.3385 0.8610 16 6 8.3732 -5.0084 -0.6312 17 6 8.3715 -3.6612 -1.3533 18 6 7.4961 -3.5255 -2.6031 19 6 8.3245 -3.9221 -3.8311 20 7 9.5873 -3.1728 -3.8126 21 6 9.9327 -2.3932 -4.8564 22 8 9.1987 -2.3072 -5.8180 23 6 11.2310 -1.6285 -4.8286 24 1 12.0302 -2.2522 -4.4281 25 6 11.0786 -0.3420 -3.9833 26 6 11.9514 0.6446 -4.7969 27 6 11.9657 0.0506 -6.1879 28 7 11.5760 -1.1609 -6.1759 29 6 10.4722 -3.2874 -2.6464 30 6 9.6845 -2.8732 -1.3917 31 1 -0.4849 0.8400 0.0004 32 1 3.8752 -0.6805 0.8888 33 1 3.8744 -0.6801 -0.8912 34 1 3.6578 -3.1506 -0.8908 35 1 3.6585 -3.1503 0.8892 36 1 5.9715 -1.7966 -0.0025 37 1 7.7477 -5.8005 -1.0425 38 1 9.3092 -5.3353 -0.1779 39 1 7.1626 -2.4928 -2.7052 40 1 6.6318 -4.1841 -2.5171 41 1 7.7705 -3.6817 -4.7386 42 1 8.5337 -4.9913 -3.8009 43 1 11.4763 -0.4823 -2.9782 44 1 10.0398 -0.0134 -3.9508 45 1 11.4989 1.6361 -4.8085 46 1 12.9613 0.6884 -4.3889 47 1 12.2669 0.5856 -7.0764 48 1 10.8108 -4.3185 -2.5448 49 1 11.3318 -2.6295 -2.7742 50 1 9.4689 -1.8054 -1.4285 51 1 10.2723 -3.0989 -0.5019 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271516568.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:45 Heat of formation + Delta-G solvation = -54.149382 kcal Electronic energy + Delta-G solvation = -30824.006664 eV Core-core repulsion = 26722.811791 eV Total energy + Delta-G solvation = -4101.194873 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.89317 -41.12106 -39.66698 -38.71820 -36.75916 -36.29035 -34.80958 -32.79837 -32.13346 -31.39157 -30.97078 -29.71649 -27.36817 -25.16354 -24.74327 -24.48138 -22.96180 -22.60871 -21.72832 -21.08878 -20.23936 -19.21400 -19.03105 -18.63462 -17.97793 -17.13791 -16.80825 -16.72529 -16.49723 -16.27134 -16.11519 -15.77019 -15.76649 -15.23210 -14.90555 -14.81786 -14.65430 -14.51088 -14.17641 -14.14905 -13.82866 -13.41059 -13.36704 -13.12682 -13.08011 -13.04266 -12.78402 -12.68550 -12.49740 -12.28890 -12.21448 -12.19515 -11.79578 -11.75771 -11.56337 -11.28041 -11.20458 -11.01425 -10.82683 -10.74887 -10.60023 -10.37651 -10.08407 -9.67938 -8.33690 -6.41360 1.23885 1.35544 1.38322 1.48385 1.49542 1.56987 1.96506 2.20621 2.33443 2.69083 3.01232 3.29583 3.37594 3.52258 3.56804 3.65850 3.76035 3.82473 3.92684 4.00981 4.03257 4.08290 4.23349 4.31325 4.34001 4.36234 4.43231 4.50495 4.55917 4.59450 4.65375 4.69159 4.73078 4.86855 4.88829 4.92907 4.96214 5.01959 5.08326 5.10098 5.11599 5.18744 5.31292 5.35093 5.39349 5.39839 5.51228 5.61121 6.18185 6.31953 6.59144 6.67702 6.71956 7.10746 7.23118 7.28153 8.83288 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009694 B = 0.002671 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2887.704417 B =10479.733536 C =12347.455730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.004 3.996 3 Si 0.959 3.041 4 H -0.268 1.268 5 H -0.284 1.284 6 H -0.234 1.234 7 C -0.541 4.541 8 H 0.027 0.973 9 C -0.010 4.010 10 C 0.145 3.855 11 N -0.712 5.712 12 C 0.532 3.468 13 O -0.594 6.594 14 C -0.181 4.181 15 H 0.163 0.837 16 C -0.130 4.130 17 C -0.091 4.091 18 C -0.097 4.097 19 C 0.122 3.878 20 N -0.604 5.604 21 C 0.517 3.483 22 O -0.585 6.585 23 C 0.026 3.974 24 H 0.137 0.863 25 C -0.138 4.138 26 C -0.146 4.146 27 C 0.142 3.858 28 N -0.537 5.537 29 C 0.102 3.898 30 C -0.090 4.090 31 H 0.268 0.732 32 H 0.039 0.961 33 H 0.031 0.969 34 H 0.037 0.963 35 H 0.043 0.957 36 H 0.413 0.587 37 H 0.078 0.922 38 H 0.141 0.859 39 H 0.060 0.940 40 H 0.052 0.948 41 H 0.063 0.937 42 H 0.082 0.918 43 H 0.125 0.875 44 H 0.057 0.943 45 H 0.101 0.899 46 H 0.123 0.877 47 H 0.199 0.801 48 H 0.092 0.908 49 H 0.114 0.886 50 H 0.080 0.920 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 37.869 0.829 -3.379 38.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.193 4.193 3 Si 0.781 3.219 4 H -0.193 1.193 5 H -0.210 1.210 6 H -0.157 1.157 7 C -0.580 4.580 8 H 0.045 0.955 9 C -0.048 4.048 10 C 0.021 3.979 11 N -0.363 5.363 12 C 0.320 3.680 13 O -0.476 6.476 14 C -0.202 4.202 15 H 0.180 0.820 16 C -0.167 4.167 17 C -0.091 4.091 18 C -0.136 4.136 19 C -0.001 4.001 20 N -0.337 5.337 21 C 0.306 3.694 22 O -0.464 6.464 23 C -0.087 4.087 24 H 0.154 0.846 25 C -0.177 4.177 26 C -0.185 4.185 27 C -0.071 4.071 28 N -0.244 5.244 29 C -0.019 4.019 30 C -0.127 4.127 31 H 0.077 0.923 32 H 0.057 0.943 33 H 0.050 0.950 34 H 0.056 0.944 35 H 0.062 0.938 36 H 0.249 0.751 37 H 0.097 0.903 38 H 0.159 0.841 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.100 0.900 43 H 0.144 0.856 44 H 0.076 0.924 45 H 0.119 0.881 46 H 0.141 0.859 47 H 0.216 0.784 48 H 0.110 0.890 49 H 0.132 0.868 50 H 0.098 0.902 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 36.670 -0.682 -4.405 36.940 hybrid contribution -1.308 1.076 0.394 1.738 sum 35.362 0.394 -4.011 35.591 Atomic orbital electron populations 1.70077 1.08600 1.28491 1.51846 1.26103 0.95716 1.03921 0.93592 0.85535 0.79794 0.77300 0.79241 1.19299 1.20957 1.15724 1.21260 0.91637 0.93348 1.51738 0.95469 1.19622 0.94402 0.92840 0.97914 1.20994 0.78955 0.98365 0.99610 1.46054 1.07031 1.09253 1.73931 1.20498 0.90252 0.82809 0.74427 1.90675 1.71591 1.33196 1.52090 1.22418 0.88702 1.08382 1.00688 0.81992 1.23194 1.02275 0.90321 1.00910 1.21504 0.97606 1.00677 0.89342 1.21453 0.96898 1.01430 0.93782 1.21373 0.84804 0.96160 0.97769 1.48126 1.21341 1.45442 1.18807 1.20945 0.88016 0.78771 0.81651 1.90683 1.54903 1.65309 1.35522 1.23004 0.95061 0.99033 0.91570 0.84600 1.23135 1.01126 0.92359 1.01079 1.22638 1.02596 1.00767 0.92486 1.27391 0.88754 0.91035 0.99882 1.72812 1.13043 1.16740 1.21826 1.22251 0.92461 1.04275 0.82919 1.21732 0.92092 0.99747 0.99160 0.92270 0.94286 0.95042 0.94431 0.93832 0.75114 0.90329 0.84116 0.92165 0.92950 0.91872 0.89974 0.85638 0.92367 0.88053 0.85917 0.78412 0.89004 0.86794 0.90170 0.86335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.02 13.96 21.45 0.30 -59.72 16 2 C 0.00 0.22 5.47 84.66 0.46 0.69 16 3 Si 0.96 42.73 27.47 68.60 1.88 44.62 16 4 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 6 H -0.23 -9.17 6.54 99.48 0.65 -8.52 16 7 C -0.54 -31.50 9.66 25.60 0.25 -31.25 16 8 H 0.03 1.77 7.99 -2.91 -0.02 1.75 16 9 C -0.01 -0.45 4.16 29.85 0.12 -0.33 16 10 C 0.14 6.06 5.61 86.38 0.48 6.55 16 11 N -0.71 -22.41 5.56 -463.06 -2.57 -24.98 16 12 C 0.53 16.38 6.09 87.66 0.53 16.92 16 13 O -0.59 -24.29 16.61 -3.04 -0.05 -24.34 16 14 C -0.18 -3.30 5.90 -11.59 -0.07 -3.37 16 15 H 0.16 1.88 8.14 -2.39 -0.02 1.86 16 16 C -0.13 -1.98 9.45 30.55 0.29 -1.69 16 17 C -0.09 -1.33 1.94 -52.17 -0.10 -1.43 16 18 C -0.10 -2.15 5.23 30.77 0.16 -1.99 16 19 C 0.12 2.64 6.44 86.43 0.56 3.19 16 20 N -0.60 -10.45 2.91 -817.78 -2.38 -12.84 16 21 C 0.52 11.99 6.90 87.66 0.60 12.60 16 22 O -0.59 -20.50 15.93 -3.03 -0.05 -20.55 16 23 C 0.03 0.38 2.96 44.78 0.13 0.52 16 24 H 0.14 1.22 6.88 -2.39 -0.02 1.21 16 25 C -0.14 -1.17 6.35 31.79 0.20 -0.97 16 26 C -0.15 -0.72 6.90 30.65 0.21 -0.51 16 27 C 0.14 1.49 12.06 88.95 1.07 2.57 16 28 N -0.54 -10.39 10.60 -317.96 -3.37 -13.76 16 29 C 0.10 0.70 6.23 86.60 0.54 1.24 16 30 C -0.09 -0.57 5.85 30.93 0.18 -0.39 16 31 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 32 H 0.04 1.64 7.20 -2.39 -0.02 1.63 16 33 H 0.03 1.34 7.57 -2.39 -0.02 1.32 16 34 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.41 10.21 8.47 -92.71 -0.79 9.43 16 37 H 0.08 1.68 7.93 -2.39 -0.02 1.66 16 38 H 0.14 1.10 8.14 -2.38 -0.02 1.08 16 39 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 40 H 0.05 1.46 7.36 -2.39 -0.02 1.44 16 41 H 0.06 1.78 6.96 -2.38 -0.02 1.76 16 42 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.13 0.17 7.58 -2.39 -0.02 0.15 16 44 H 0.06 0.80 7.90 -2.39 -0.02 0.79 16 45 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 46 H 0.12 -0.02 8.14 -2.38 -0.02 -0.04 16 47 H 0.20 0.87 8.06 -2.91 -0.02 0.85 16 48 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 49 H 0.11 0.18 4.85 -2.39 -0.01 0.17 16 50 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 51 H 0.12 0.03 8.10 -2.39 -0.02 0.01 16 Total: -1.00 -91.92 407.58 -0.51 -92.43 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: 0.09 Total: 16.80 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: 5.63 Total: 2.34 kcal Atomic # 7 Polarization: -103.27 SS G_CDS: -8.03 Total: -111.29 kcal Atomic # 8 Polarization: -44.79 SS G_CDS: -0.10 Total: -44.89 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 1.88 Total: 44.62 kcal Total: -91.92 -0.51 -92.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271516568.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.278 kcal (2) G-P(sol) polarization free energy of solvation -91.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds