Wall clock time and date at job start Wed Apr 1 2020 04:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00079 * 2 1 4 4 H 1.48497 * 109.47089 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46812 * 299.99719 * 3 2 1 6 6 H 1.48494 * 109.47067 * 59.99525 * 3 2 1 7 7 C 1.37883 * 119.99795 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99565 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00209 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47231 * 180.02562 * 9 7 2 11 11 N 1.46500 * 109.47245 * 179.97438 * 10 9 7 12 12 C 1.34775 * 119.99941 * 180.02562 * 11 10 9 13 13 O 1.21274 * 120.00359 * 0.02562 * 12 11 10 14 14 C 1.50701 * 119.99765 * 180.02562 * 12 11 10 15 15 H 1.08999 * 115.55211 * 61.73502 * 14 12 11 16 16 C 1.53029 * 117.50065 * 207.42128 * 14 12 11 17 17 C 1.52818 * 117.50152 * 276.04801 * 14 12 11 18 18 C 1.53187 * 117.71240 * 144.89999 * 17 14 12 19 19 C 1.53354 * 108.76936 * 158.88834 * 18 17 14 20 20 N 1.46845 * 108.81385 * 51.31001 * 19 18 17 21 21 C 1.34771 * 120.38653 * 123.11983 * 20 19 18 22 22 O 1.21277 * 120.00188 * 179.97438 * 21 20 19 23 23 C 1.50703 * 120.00005 * 359.97153 * 21 20 19 24 24 H 1.09004 * 110.28770 * 317.87935 * 23 21 20 25 25 C 1.54685 * 110.31787 * 80.00244 * 23 21 20 26 26 C 1.54832 * 100.79674 * 142.85683 * 25 23 21 27 27 C 1.51260 * 103.78014 * 336.47157 * 26 25 23 28 28 N 1.27263 * 111.24472 * 15.92330 * 27 26 25 29 29 C 1.46849 * 119.23126 * 303.09573 * 20 19 18 30 30 C 1.53179 * 117.71355 * 0.14188 * 17 14 12 31 31 H 0.97000 * 120.00108 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.46921 * 59.99961 * 9 7 2 33 33 H 1.09003 * 109.47432 * 300.00511 * 9 7 2 34 34 H 1.09001 * 109.46780 * 60.00733 * 10 9 7 35 35 H 1.08996 * 109.47533 * 300.00326 * 10 9 7 36 36 H 0.97004 * 120.00059 * 0.02562 * 11 10 9 37 37 H 1.09004 * 117.50198 * 214.95381 * 16 14 12 38 38 H 1.09004 * 117.50550 * 0.02562 * 16 14 12 39 39 H 1.08996 * 109.58891 * 278.67867 * 18 17 14 40 40 H 1.09003 * 109.58573 * 39.11065 * 18 17 14 41 41 H 1.08994 * 109.58282 * 291.51213 * 19 18 17 42 42 H 1.08997 * 109.58146 * 171.10461 * 19 18 17 43 43 H 1.08998 * 111.15253 * 260.74058 * 25 23 21 44 44 H 1.08993 * 111.15679 * 24.93287 * 25 23 21 45 45 H 1.08999 * 110.56242 * 95.04169 * 26 25 23 46 46 H 1.08997 * 110.56190 * 217.89470 * 26 25 23 47 47 H 1.08005 * 124.37575 * 195.95298 * 27 26 25 48 48 H 1.08999 * 109.58138 * 297.11136 * 29 20 19 49 49 H 1.08997 * 109.58298 * 176.70543 * 29 20 19 50 50 H 1.09002 * 109.58871 * 320.89331 * 30 17 14 51 51 H 1.08998 * 109.59065 * 81.18323 * 30 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8903 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 7 1.5128 -4.9308 0.0045 12 6 2.1867 -6.0980 0.0062 13 8 3.3994 -6.0981 0.0067 14 6 1.4331 -7.4031 0.0074 15 1 0.7951 -7.5784 -0.8588 16 6 2.1229 -8.6168 0.6342 17 6 0.9560 -7.9412 1.3558 18 6 -0.3831 -8.6843 1.3928 19 6 -0.4223 -9.5685 2.6452 20 7 -0.0778 -8.7493 3.8142 21 6 -0.9266 -8.6586 4.8571 22 8 -0.6347 -7.9804 5.8192 23 6 -2.2383 -9.3998 4.8277 24 1 -2.6973 -9.3170 3.8425 25 6 -2.0236 -10.8865 5.1970 26 6 -3.3043 -11.1689 6.0200 27 6 -3.7262 -9.8016 6.5104 28 7 -3.1422 -8.8775 5.8588 29 6 1.2026 -8.0304 3.8339 30 6 1.2747 -7.1150 2.6056 31 1 -0.4850 0.8400 -0.0004 32 1 0.6241 -2.5575 -0.8880 33 1 0.6246 -2.5564 0.8919 34 1 2.8718 -3.6036 0.8928 35 1 2.8720 -3.6052 -0.8872 36 1 0.5427 -4.9309 0.0044 37 1 1.9383 -9.5906 0.1807 38 1 3.1216 -8.4712 1.0461 39 1 -1.2000 -7.9637 1.4284 40 1 -0.4804 -9.3065 0.5031 41 1 0.2984 -10.3796 2.5424 42 1 -1.4236 -9.9805 2.7702 43 1 -1.9835 -11.5116 4.3050 44 1 -1.1282 -11.0154 5.8050 45 1 -4.0778 -11.6041 5.3873 46 1 -3.0819 -11.8255 6.8611 47 1 -4.4315 -9.6316 7.3105 48 1 2.0240 -8.7464 3.8046 49 1 1.2707 -7.4303 4.7412 50 1 2.2774 -6.6959 2.5208 51 1 0.5486 -6.3082 2.7054 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271516570.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:51 Heat of formation + Delta-G solvation = -56.741037 kcal Electronic energy + Delta-G solvation = -30544.039951 eV Core-core repulsion = 26442.732695 eV Total energy + Delta-G solvation = -4101.307256 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.89042 -41.11927 -39.67728 -38.71206 -36.72798 -36.28365 -34.83955 -32.80305 -31.79131 -31.40580 -30.89700 -29.71670 -27.23030 -25.19948 -24.86386 -24.52411 -22.96662 -22.76138 -21.67619 -21.11511 -20.27131 -19.32011 -18.68969 -18.47648 -17.91829 -17.10792 -16.94107 -16.71617 -16.61539 -16.46500 -15.92474 -15.76314 -15.68929 -15.14812 -15.01509 -14.74899 -14.54672 -14.34926 -14.22844 -14.09367 -13.81885 -13.39354 -13.27512 -13.12768 -13.02106 -12.99345 -12.75200 -12.72802 -12.57416 -12.50278 -12.30994 -12.22107 -11.82233 -11.70339 -11.50337 -11.28506 -11.17522 -11.02475 -10.73575 -10.65778 -10.59376 -10.36636 -10.05995 -9.68279 -8.28817 -6.39773 1.24634 1.37155 1.38002 1.48414 1.51383 1.55959 1.98203 2.19533 2.40573 2.69290 3.05698 3.29492 3.37723 3.51273 3.55425 3.65337 3.74347 3.82800 3.93489 4.00418 4.03408 4.07343 4.22799 4.33631 4.40942 4.41105 4.46537 4.50167 4.55002 4.59367 4.65942 4.72315 4.78181 4.85928 4.88469 4.92300 4.94498 5.02165 5.07370 5.10219 5.17869 5.24849 5.29894 5.39912 5.44813 5.50778 5.51402 5.73502 6.10932 6.31711 6.60158 6.73588 6.74145 7.10570 7.25678 7.29787 8.83328 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011967 B = 0.002235 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.182944 B =12523.525467 C =14129.750086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.006 3.994 3 Si 0.967 3.033 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.277 1.277 7 C -0.547 4.547 8 H 0.058 0.942 9 C 0.025 3.975 10 C 0.141 3.859 11 N -0.714 5.714 12 C 0.533 3.467 13 O -0.593 6.593 14 C -0.187 4.187 15 H 0.158 0.842 16 C -0.121 4.121 17 C -0.093 4.093 18 C -0.094 4.094 19 C 0.104 3.896 20 N -0.605 5.605 21 C 0.517 3.483 22 O -0.585 6.585 23 C 0.024 3.976 24 H 0.132 0.868 25 C -0.135 4.135 26 C -0.144 4.144 27 C 0.141 3.859 28 N -0.541 5.541 29 C 0.123 3.877 30 C -0.098 4.098 31 H 0.266 0.734 32 H 0.010 0.990 33 H 0.003 0.997 34 H 0.040 0.960 35 H 0.047 0.953 36 H 0.408 0.592 37 H 0.144 0.856 38 H 0.082 0.918 39 H 0.067 0.933 40 H 0.120 0.880 41 H 0.101 0.899 42 H 0.113 0.887 43 H 0.125 0.875 44 H 0.063 0.937 45 H 0.121 0.879 46 H 0.106 0.894 47 H 0.198 0.802 48 H 0.089 0.911 49 H 0.062 0.938 50 H 0.054 0.946 51 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.537 -33.418 6.182 35.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.193 4.193 3 Si 0.791 3.209 4 H -0.190 1.190 5 H -0.199 1.199 6 H -0.203 1.203 7 C -0.586 4.586 8 H 0.076 0.924 9 C -0.013 4.013 10 C 0.017 3.983 11 N -0.364 5.364 12 C 0.321 3.679 13 O -0.474 6.474 14 C -0.208 4.208 15 H 0.176 0.824 16 C -0.158 4.158 17 C -0.094 4.094 18 C -0.132 4.132 19 C -0.017 4.017 20 N -0.337 5.337 21 C 0.306 3.694 22 O -0.464 6.464 23 C -0.089 4.089 24 H 0.149 0.851 25 C -0.174 4.174 26 C -0.183 4.183 27 C -0.071 4.071 28 N -0.249 5.249 29 C 0.000 4.000 30 C -0.137 4.137 31 H 0.075 0.925 32 H 0.028 0.972 33 H 0.022 0.978 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.244 0.756 37 H 0.161 0.839 38 H 0.101 0.899 39 H 0.086 0.914 40 H 0.138 0.862 41 H 0.120 0.880 42 H 0.131 0.869 43 H 0.143 0.857 44 H 0.082 0.918 45 H 0.139 0.861 46 H 0.124 0.876 47 H 0.215 0.785 48 H 0.107 0.893 49 H 0.081 0.919 50 H 0.073 0.927 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.498 -31.882 6.504 33.630 hybrid contribution 0.365 1.246 -0.041 1.299 sum -8.133 -30.636 6.463 32.349 Atomic orbital electron populations 1.70068 1.07574 1.28009 1.50946 1.25910 0.95840 1.03226 0.94345 0.85371 0.78927 0.78617 0.77997 1.18951 1.19894 1.20271 1.21489 0.93544 0.91944 1.51604 0.92369 1.19110 0.94161 0.91883 0.96137 1.21189 0.95006 0.82550 0.99523 1.46158 1.10969 1.05613 1.73676 1.20461 0.87280 0.85697 0.74473 1.90646 1.16059 1.88387 1.52309 1.22431 1.05725 0.91950 1.00670 0.82443 1.23214 0.96211 0.96038 1.00350 1.21499 0.97746 1.00724 0.89397 1.21666 0.93053 0.98743 0.99707 1.22160 1.03866 0.93106 0.82546 1.48135 1.18525 1.48574 1.18512 1.20941 0.85949 0.80598 0.81920 1.90678 1.77143 1.42730 1.35876 1.23020 0.91172 0.94701 1.00009 0.85098 1.23127 0.99191 0.92313 1.02780 1.22636 0.97127 0.97088 1.01470 1.27415 0.93776 0.91386 0.94563 1.72831 1.08734 1.36361 1.06927 1.21383 0.85737 0.95332 0.97501 1.21447 1.00823 0.97295 0.94097 0.92484 0.97206 0.97844 0.94115 0.93475 0.75635 0.83855 0.89903 0.91380 0.86198 0.88049 0.86938 0.85664 0.91776 0.86110 0.87554 0.78494 0.89256 0.91909 0.92712 0.93096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.85 13.29 21.45 0.28 -55.57 16 2 C 0.01 0.32 5.46 84.66 0.46 0.78 16 3 Si 0.97 44.95 29.54 68.60 2.03 46.98 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 6 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 7 C -0.55 -31.67 9.11 25.60 0.23 -31.44 16 8 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 9 C 0.02 1.29 5.09 29.85 0.15 1.44 16 10 C 0.14 6.38 5.61 86.38 0.48 6.86 16 11 N -0.71 -25.87 5.56 -463.08 -2.57 -28.45 16 12 C 0.53 17.96 6.09 87.66 0.53 18.49 16 13 O -0.59 -25.00 16.61 -3.01 -0.05 -25.05 16 14 C -0.19 -3.97 5.90 -11.59 -0.07 -4.03 16 15 H 0.16 2.41 8.14 -2.39 -0.02 2.39 16 16 C -0.12 -2.00 9.46 30.58 0.29 -1.71 16 17 C -0.09 -1.62 1.94 -52.14 -0.10 -1.72 16 18 C -0.09 -0.93 5.83 30.78 0.18 -0.75 16 19 C 0.10 0.88 6.19 86.43 0.54 1.41 16 20 N -0.60 -11.41 2.92 -818.70 -2.39 -13.80 16 21 C 0.52 12.82 6.90 87.66 0.60 13.42 16 22 O -0.59 -21.39 15.93 -3.02 -0.05 -21.43 16 23 C 0.02 0.39 2.97 44.78 0.13 0.52 16 24 H 0.13 1.55 6.76 -2.38 -0.02 1.54 16 25 C -0.14 -1.08 6.38 31.79 0.20 -0.88 16 26 C -0.14 -0.66 6.90 30.65 0.21 -0.45 16 27 C 0.14 1.61 12.06 88.95 1.07 2.68 16 28 N -0.54 -11.56 10.60 -317.96 -3.37 -14.93 16 29 C 0.12 2.83 6.44 86.43 0.56 3.39 16 30 C -0.10 -2.45 5.24 30.77 0.16 -2.29 16 31 H 0.27 15.02 8.31 -92.71 -0.77 14.24 16 32 H 0.01 0.52 8.14 -2.39 -0.02 0.51 16 33 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 34 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.41 13.05 8.47 -92.71 -0.79 12.26 16 37 H 0.14 1.22 8.14 -2.38 -0.02 1.20 16 38 H 0.08 1.80 7.93 -2.39 -0.02 1.78 16 39 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.12 0.40 8.10 -2.39 -0.02 0.38 16 41 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 42 H 0.11 0.37 5.00 -2.39 -0.01 0.36 16 43 H 0.13 0.11 7.76 -2.39 -0.02 0.09 16 44 H 0.06 0.75 7.90 -2.39 -0.02 0.73 16 45 H 0.12 0.00 8.14 -2.39 -0.02 -0.02 16 46 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 47 H 0.20 1.06 8.06 -2.91 -0.02 1.03 16 48 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 49 H 0.06 1.85 6.96 -2.39 -0.02 1.83 16 50 H 0.05 1.64 7.36 -2.39 -0.02 1.62 16 51 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -88.77 411.39 -0.33 -89.10 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: 0.15 Total: 17.43 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: 5.64 Total: 5.72 kcal Atomic # 7 Polarization: -104.70 SS G_CDS: -8.05 Total: -112.75 kcal Atomic # 8 Polarization: -46.38 SS G_CDS: -0.10 Total: -46.48 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -88.77 -0.33 -89.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271516570.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.363 kcal (2) G-P(sol) polarization free energy of solvation -88.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds