Wall clock time and date at job start Wed Apr 1 2020 04:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 N 1.46496 * 109.46995 * 179.97438 * 10 9 7 12 12 C 1.46778 * 124.34788 * 89.99882 * 11 10 9 13 13 C 1.54369 * 105.46222 * 196.81255 * 12 11 10 14 14 C 1.54456 * 101.90894 * 334.80034 * 13 12 11 15 15 C 1.34441 * 124.34820 * 269.69810 * 11 10 9 16 16 O 1.21280 * 124.94420 * 359.62915 * 15 11 10 17 17 C 1.54287 * 108.48819 * 220.37825 * 13 12 11 18 18 O 1.40377 * 108.79111 * 158.05578 * 17 13 12 19 19 C 1.44179 * 117.15930 * 92.92629 * 18 17 13 20 20 C 1.53845 * 112.86962 * 317.90099 * 19 18 17 21 21 N 1.44337 * 112.22759 * 318.41777 * 20 19 18 22 22 C 1.46904 * 111.00068 * 215.85912 * 21 20 19 23 23 C 1.50701 * 109.46833 * 46.94436 * 22 21 20 24 24 C 1.34851 * 125.88661 * 95.00248 * 23 22 21 25 25 C 1.40897 * 107.41467 * 179.97438 * 24 23 22 26 26 C 1.34850 * 107.41795 * 0.02562 * 25 24 23 27 27 N 1.36340 * 125.89101 * 274.69008 * 23 22 21 28 28 H 0.97001 * 125.63583 * 0.02562 * 27 23 22 29 29 C 1.46524 * 112.73979 * 95.91659 * 13 12 11 30 30 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46909 * 299.99046 * 9 7 2 32 32 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 33 33 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 34 34 H 1.09001 * 109.46801 * 59.99558 * 10 9 7 35 35 H 1.08996 * 110.25053 * 315.81451 * 12 11 10 36 36 H 1.09003 * 110.24758 * 77.72867 * 12 11 10 37 37 H 1.09000 * 110.48713 * 143.29905 * 14 13 12 38 38 H 1.09004 * 110.48806 * 265.93556 * 14 13 12 39 39 H 1.08996 * 109.58580 * 277.84951 * 17 13 12 40 40 H 1.09000 * 109.58206 * 38.27190 * 17 13 12 41 41 H 1.09001 * 108.80092 * 197.03705 * 19 18 17 42 42 H 1.08995 * 108.80479 * 78.77943 * 19 18 17 43 43 H 1.09004 * 108.93380 * 197.70619 * 20 19 18 44 44 H 1.09001 * 108.85871 * 79.07676 * 20 19 18 45 45 H 1.08988 * 109.46916 * 166.94618 * 22 21 20 46 46 H 1.09003 * 109.46632 * 286.94685 * 22 21 20 47 47 H 1.07992 * 126.29365 * 359.97438 * 24 23 22 48 48 H 1.08001 * 126.28943 * 180.02562 * 25 24 23 49 49 H 1.08001 * 125.89317 * 180.02562 * 26 25 24 50 50 H 1.08997 * 108.92421 * 304.04691 * 29 13 12 51 51 H 1.09002 * 108.92286 * 62.69926 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 7 1.5129 -4.9308 0.0012 12 6 1.0984 -5.6483 -1.2103 13 6 0.0219 -6.6524 -0.7459 14 6 0.3931 -6.8532 0.7399 15 6 1.1391 -5.5903 1.1114 16 8 1.3647 -5.2248 2.2456 17 6 0.2418 -7.9852 -1.4914 18 8 -0.3582 -9.0193 -0.7557 19 6 -1.7145 -9.3690 -1.0976 20 6 -2.6016 -8.1393 -1.3576 21 7 -2.3611 -7.0814 -0.4056 22 6 -3.6065 -6.3743 -0.0784 23 6 -4.6927 -7.3780 0.2112 24 6 -5.0459 -7.8306 1.4314 25 6 -6.0980 -8.7504 1.2518 26 6 -6.3473 -8.8252 -0.0714 27 7 -5.4918 -7.9805 -0.7147 28 1 -5.4558 -7.8346 -1.6730 29 6 -1.3409 -6.1452 -0.9256 30 1 -0.4850 -0.8401 -0.0004 31 1 0.6242 -2.5567 0.8904 32 1 0.6248 -2.5571 -0.8896 33 1 2.8720 -3.6043 -0.8895 34 1 2.8721 -3.6042 0.8905 35 1 0.6772 -4.9522 -1.9356 36 1 1.9470 -6.1770 -1.6446 37 1 -0.5060 -6.9612 1.3466 38 1 1.0402 -7.7226 0.8573 39 1 -0.2122 -7.9297 -2.4807 40 1 1.3103 -8.1779 -1.5877 41 1 -2.1453 -9.9462 -0.2795 42 1 -1.7021 -9.9891 -1.9939 43 1 -3.6479 -8.4387 -1.2967 44 1 -2.3993 -7.7647 -2.3610 45 1 -3.4484 -5.7468 0.7985 46 1 -3.9030 -5.7514 -0.9223 47 1 -4.6036 -7.5413 2.3732 48 1 -6.6106 -9.2953 2.0306 49 1 -7.0986 -9.4434 -0.5402 50 1 -1.4357 -5.1934 -0.4029 51 1 -1.5207 -5.9836 -1.9885 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272925597.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:34 Heat of formation + Delta-G solvation = -34.638751 kcal Electronic energy + Delta-G solvation = -31993.301183 eV Core-core repulsion = 27892.952354 eV Total energy + Delta-G solvation = -4100.348829 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.45422 -41.93086 -40.00353 -37.60044 -37.41780 -36.31569 -34.56707 -31.99727 -31.74544 -31.45987 -29.65493 -29.21596 -27.36855 -27.04558 -25.97052 -24.83428 -23.60827 -22.16617 -21.54467 -20.98817 -20.80160 -20.51231 -19.05379 -18.41147 -17.82128 -17.51420 -17.42437 -17.08322 -16.48678 -15.97285 -15.88470 -15.66040 -15.44887 -15.26223 -15.02663 -14.82475 -14.78637 -14.63540 -14.38705 -14.34007 -14.17670 -13.91804 -13.63802 -13.36727 -13.10984 -12.91522 -12.79997 -12.71870 -12.47387 -12.39767 -12.29349 -12.11666 -12.07284 -11.95088 -11.89981 -11.50254 -10.98970 -10.72881 -10.59515 -10.36294 -9.74220 -9.67228 -9.44198 -8.96262 -8.75348 -6.46449 1.22457 1.50408 1.55761 1.59915 1.78875 2.03085 2.09346 2.37016 2.54824 2.63048 3.10975 3.11741 3.31275 3.51182 3.63919 3.72926 3.84548 3.94042 3.99520 4.14487 4.19394 4.28412 4.32640 4.40347 4.43673 4.48349 4.51176 4.59597 4.60434 4.62644 4.64623 4.68005 4.70376 4.73664 4.83231 4.84418 5.00207 5.02336 5.09908 5.17469 5.22928 5.32441 5.43242 5.54488 5.83548 5.92640 6.01432 6.07604 6.10276 6.18032 6.21671 6.47800 6.51305 6.73355 7.15796 7.37043 8.65153 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012302 B = 0.002843 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.577031 B = 9846.601709 C =11138.161450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.038 4.038 3 Si 1.120 2.880 4 H -0.283 1.283 5 H -0.260 1.260 6 H -0.273 1.273 7 C -0.620 4.620 8 H 0.058 0.942 9 C 0.011 3.989 10 C 0.148 3.852 11 N -0.617 5.617 12 C 0.111 3.889 13 C -0.086 4.086 14 C -0.104 4.104 15 C 0.495 3.505 16 O -0.596 6.596 17 C 0.089 3.911 18 O -0.388 6.388 19 C 0.075 3.925 20 C 0.007 3.993 21 N -0.527 5.527 22 C 0.128 3.872 23 C 0.008 3.992 24 C -0.197 4.197 25 C -0.225 4.225 26 C 0.004 3.996 27 N -0.551 5.551 28 H 0.424 0.576 29 C 0.074 3.926 30 H 0.252 0.748 31 H -0.034 1.034 32 H -0.001 1.001 33 H 0.094 0.906 34 H 0.050 0.950 35 H 0.081 0.919 36 H 0.110 0.890 37 H 0.096 0.904 38 H 0.116 0.884 39 H 0.074 0.926 40 H 0.109 0.891 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.095 0.905 44 H 0.053 0.947 45 H 0.078 0.922 46 H 0.049 0.951 47 H 0.121 0.879 48 H 0.142 0.858 49 H 0.198 0.802 50 H 0.045 0.955 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.917 -24.074 -11.161 28.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.235 4.235 3 Si 0.940 3.060 4 H -0.209 1.209 5 H -0.184 1.184 6 H -0.199 1.199 7 C -0.658 4.658 8 H 0.076 0.924 9 C -0.027 4.027 10 C 0.026 3.974 11 N -0.349 5.349 12 C -0.012 4.012 13 C -0.087 4.087 14 C -0.144 4.144 15 C 0.285 3.715 16 O -0.478 6.478 17 C 0.011 3.989 18 O -0.306 6.306 19 C -0.002 4.002 20 C -0.122 4.122 21 N -0.251 5.251 22 C 0.001 3.999 23 C -0.104 4.104 24 C -0.223 4.223 25 C -0.250 4.250 26 C -0.128 4.128 27 N -0.149 5.149 28 H 0.263 0.737 29 C -0.053 4.053 30 H 0.061 0.939 31 H -0.016 1.016 32 H 0.018 0.982 33 H 0.112 0.888 34 H 0.068 0.932 35 H 0.099 0.901 36 H 0.128 0.872 37 H 0.114 0.886 38 H 0.134 0.866 39 H 0.092 0.908 40 H 0.126 0.874 41 H 0.098 0.902 42 H 0.092 0.908 43 H 0.112 0.888 44 H 0.071 0.929 45 H 0.096 0.904 46 H 0.067 0.933 47 H 0.139 0.861 48 H 0.160 0.840 49 H 0.215 0.785 50 H 0.064 0.936 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.679 -22.475 -10.201 26.511 hybrid contribution -0.532 -0.576 -0.505 0.933 sum -10.210 -23.051 -10.706 27.390 Atomic orbital electron populations 1.70923 1.08051 1.29625 1.48525 1.27530 0.96555 1.07025 0.92409 0.82918 0.74129 0.70712 0.78236 1.20884 1.18427 1.19854 1.22377 0.94984 0.92902 1.55559 0.92375 1.19351 0.95188 0.94502 0.93641 1.21214 0.93636 0.80758 1.01775 1.48613 1.56049 1.22169 1.08046 1.22388 0.98008 0.94207 0.86586 1.21014 0.94191 0.97923 0.95600 1.22055 1.00993 0.94169 0.97147 1.21979 0.78652 0.86954 0.83936 1.90651 1.59916 1.73535 1.23694 1.22503 0.99394 0.83448 0.93509 1.87446 1.27544 1.53225 1.62352 1.23050 0.80958 0.94894 1.01275 1.22829 1.02281 0.93206 0.93844 1.61286 1.08065 1.11406 1.44344 1.20566 0.85482 0.92768 1.01117 1.19850 0.98218 1.02769 0.89531 1.20888 1.01733 1.02954 0.96687 1.21166 1.02355 1.04753 0.96701 1.22340 0.98724 0.98955 0.92738 1.42185 1.28672 1.34792 1.09265 0.73683 1.20910 0.90966 0.94432 0.99034 0.93866 1.01554 0.98234 0.88799 0.93151 0.90090 0.87208 0.88567 0.86561 0.90785 0.87361 0.90174 0.90832 0.88753 0.92896 0.90356 0.93271 0.86065 0.83974 0.78510 0.93618 0.91742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.47 13.65 21.45 0.29 -59.18 16 2 C -0.04 -2.24 5.46 84.65 0.46 -1.78 16 3 Si 1.12 50.91 29.90 68.60 2.05 52.97 16 4 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 5 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.62 -36.25 9.11 25.60 0.23 -36.02 16 8 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 9 C 0.01 0.61 4.61 29.85 0.14 0.74 16 10 C 0.15 6.46 5.88 86.38 0.51 6.96 16 11 N -0.62 -22.50 2.93 -818.09 -2.40 -24.90 16 12 C 0.11 2.67 6.47 86.79 0.56 3.23 16 13 C -0.09 -1.85 0.62 -52.79 -0.03 -1.89 16 14 C -0.10 -2.99 5.30 30.54 0.16 -2.83 16 15 C 0.49 19.77 8.03 87.90 0.71 20.47 16 16 O -0.60 -30.44 17.59 -3.03 -0.05 -30.49 16 17 C 0.09 1.35 5.13 72.42 0.37 1.72 16 18 O -0.39 -7.16 9.32 -143.87 -1.34 -8.50 16 19 C 0.07 1.09 7.02 72.27 0.51 1.60 16 20 C 0.01 0.10 4.90 87.07 0.43 0.53 16 21 N -0.53 -10.65 3.98 -915.23 -3.64 -14.28 16 22 C 0.13 2.69 5.64 85.56 0.48 3.17 16 23 C 0.01 0.16 5.38 41.08 0.22 0.38 16 24 C -0.20 -4.38 10.77 22.14 0.24 -4.14 16 25 C -0.23 -4.03 10.86 22.14 0.24 -3.79 16 26 C 0.00 0.05 11.94 83.21 0.99 1.04 16 27 N -0.55 -7.05 4.60 -182.76 -0.84 -7.89 16 28 H 0.42 3.06 8.46 -92.71 -0.78 2.27 16 29 C 0.07 1.64 3.73 84.11 0.31 1.95 16 30 H 0.25 16.40 7.22 -92.71 -0.67 15.73 16 31 H -0.03 -2.13 8.01 -2.39 -0.02 -2.15 16 32 H 0.00 -0.03 8.01 -2.39 -0.02 -0.05 16 33 H 0.09 3.56 8.14 -2.39 -0.02 3.54 16 34 H 0.05 2.41 7.92 -2.39 -0.02 2.39 16 35 H 0.08 1.94 7.92 -2.39 -0.02 1.92 16 36 H 0.11 1.91 7.38 -2.39 -0.02 1.89 16 37 H 0.10 3.06 7.50 -2.39 -0.02 3.05 16 38 H 0.12 3.02 7.53 -2.38 -0.02 3.01 16 39 H 0.07 0.80 7.16 -2.39 -0.02 0.78 16 40 H 0.11 1.32 7.53 -2.39 -0.02 1.31 16 41 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.09 1.19 4.02 -2.38 -0.01 1.18 16 44 H 0.05 0.61 6.72 -2.39 -0.02 0.60 16 45 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 46 H 0.05 0.93 8.08 -2.39 -0.02 0.91 16 47 H 0.12 2.93 8.06 -2.91 -0.02 2.91 16 48 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 49 H 0.20 1.01 8.06 -2.91 -0.02 0.98 16 50 H 0.05 1.35 7.86 -2.39 -0.02 1.33 16 51 H 0.06 1.17 7.40 -2.39 -0.02 1.15 16 Total: -1.00 -82.76 397.30 0.85 -81.90 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: 0.25 Total: 19.02 kcal Atomic # 6 Polarization: -15.18 SS G_CDS: 6.53 Total: -8.65 kcal Atomic # 7 Polarization: -99.66 SS G_CDS: -6.59 Total: -106.25 kcal Atomic # 8 Polarization: -37.60 SS G_CDS: -1.39 Total: -38.99 kcal Atomic # 14 Polarization: 50.91 SS G_CDS: 2.05 Total: 52.97 kcal Total: -82.76 0.85 -81.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272925597.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.266 kcal (2) G-P(sol) polarization free energy of solvation -82.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds