Wall clock time and date at job start Wed Apr 1 2020 04:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 120.00172 * 2 1 4 4 H 1.48506 * 109.47391 * 270.00463 * 3 2 1 5 5 H 1.48496 * 109.47222 * 30.00252 * 3 2 1 6 6 H 1.48503 * 109.47370 * 150.00590 * 3 2 1 7 7 C 1.38812 * 119.99971 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99902 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99960 * 359.97438 * 7 2 1 10 10 C 1.46491 * 120.00088 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47558 * 175.02252 * 10 9 7 12 12 N 1.46505 * 109.54023 * 305.58590 * 11 10 9 13 13 C 1.34775 * 119.99838 * 304.08811 * 12 11 10 14 14 O 1.21281 * 119.99831 * 354.69574 * 13 12 11 15 15 C 1.50702 * 119.99750 * 174.70103 * 13 12 11 16 16 C 1.53003 * 109.46706 * 179.97438 * 15 13 12 17 17 C 1.53006 * 109.46826 * 179.97438 * 16 15 13 18 18 C 1.50700 * 109.46815 * 179.97438 * 17 16 15 19 19 C 1.38235 * 119.61480 * 125.02401 * 18 17 16 20 20 C 1.38632 * 119.15718 * 179.74422 * 19 18 17 21 21 C 1.38673 * 118.41896 * 0.47411 * 20 19 18 22 22 C 1.38183 * 119.16471 * 359.49961 * 21 20 19 23 23 N 1.31854 * 119.61830 * 304.99685 * 18 17 16 24 24 C 1.53179 * 109.54288 * 65.75740 * 11 10 9 25 25 C 1.53277 * 109.06530 * 176.85780 * 24 11 10 26 26 O 1.42901 * 109.46012 * 302.44594 * 25 24 11 27 27 C 1.42900 * 114.09860 * 61.15808 * 26 25 24 28 28 C 1.53093 * 109.41539 * 298.84424 * 27 26 25 29 29 H 0.97008 * 120.00069 * 359.97438 * 1 2 3 30 30 H 0.97001 * 119.99745 * 359.97438 * 9 7 2 31 31 H 1.09001 * 109.47248 * 55.01898 * 10 9 7 32 32 H 1.09001 * 109.47314 * 295.02702 * 10 9 7 33 33 H 0.97000 * 119.99753 * 124.08835 * 12 11 10 34 34 H 1.09001 * 109.47389 * 60.00008 * 15 13 12 35 35 H 1.09001 * 109.46842 * 299.99368 * 15 13 12 36 36 H 1.09001 * 109.47101 * 59.99941 * 16 15 13 37 37 H 1.09001 * 109.47043 * 299.99354 * 16 15 13 38 38 H 1.08998 * 109.47473 * 59.99643 * 17 16 15 39 39 H 1.09001 * 109.46844 * 299.99551 * 17 16 15 40 40 H 1.07996 * 120.42044 * 359.94871 * 19 18 17 41 41 H 1.07998 * 120.78806 * 180.22614 * 20 19 18 42 42 H 1.08002 * 120.41569 * 179.78469 * 21 20 19 43 43 H 1.07999 * 119.61541 * 180.25785 * 22 21 20 44 44 H 1.09002 * 109.52026 * 296.84834 * 24 11 10 45 45 H 1.09000 * 109.51965 * 57.02892 * 24 11 10 46 46 H 1.09001 * 109.45722 * 182.45481 * 25 24 11 47 47 H 1.08990 * 109.46919 * 62.44912 * 25 24 11 48 48 H 1.09004 * 109.48513 * 178.86137 * 27 26 25 49 49 H 1.08995 * 109.49147 * 58.83208 * 27 26 25 50 50 H 1.09004 * 109.52439 * 297.70120 * 28 27 26 51 51 H 1.09000 * 109.57719 * 177.54763 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4401 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 6 1.0685 -4.8170 0.1246 12 7 0.2261 -4.6173 1.3065 13 6 0.7930 -4.4543 2.5183 14 8 1.9936 -4.5686 2.6464 15 6 -0.0649 -4.1302 3.7141 16 6 0.8195 -3.9988 4.9557 17 6 -0.0515 -3.6692 6.1697 18 6 0.8196 -3.5404 7.3927 19 6 0.7688 -2.3843 8.1488 20 6 1.5702 -2.2781 9.2750 21 6 2.4038 -3.3394 9.5943 22 6 2.4002 -4.4638 8.7911 23 7 1.6208 -4.5319 7.7294 24 6 0.1883 -4.8772 -1.1276 25 6 -0.7445 -6.0892 -1.0262 26 8 0.0340 -7.2774 -0.8708 27 6 0.8416 -7.2958 0.3080 28 6 1.8379 -6.1344 0.2604 29 1 -0.4851 0.8401 0.0004 30 1 0.3555 -2.3880 0.0002 31 1 2.7498 -3.6769 0.8415 32 1 2.6161 -3.7541 -0.9317 33 1 -0.7396 -4.6024 1.2169 34 1 -0.7904 -4.9291 3.8681 35 1 -0.5900 -3.1909 3.5406 36 1 1.5452 -3.2002 4.8020 37 1 1.3443 -4.9384 5.1290 38 1 -0.7775 -4.4674 6.3235 39 1 -0.5759 -2.7295 5.9961 40 1 0.1107 -1.5755 7.8677 41 1 1.5489 -1.3884 9.8868 42 1 3.0442 -3.2896 10.4625 43 1 3.0434 -5.2962 9.0354 44 1 -0.4033 -3.9646 -1.2011 45 1 0.8186 -4.9759 -2.0114 46 1 -1.3435 -6.1633 -1.9338 47 1 -1.4022 -5.9703 -0.1652 48 1 1.3852 -8.2391 0.3616 49 1 0.2049 -7.1928 1.1867 50 1 2.5015 -6.2585 -0.5954 51 1 2.4260 -6.1199 1.1781 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274014089.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:24 Heat of formation + Delta-G solvation = -46.917135 kcal Electronic energy + Delta-G solvation = -31236.570297 eV Core-core repulsion = 27135.689037 eV Total energy + Delta-G solvation = -4100.881260 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.44797 -40.25861 -38.34571 -35.85555 -34.80580 -33.60623 -32.52296 -31.96064 -31.07631 -30.95722 -30.34585 -27.47999 -26.41083 -23.84856 -23.70213 -23.47582 -23.03014 -21.49895 -21.24551 -20.19180 -18.90160 -17.25498 -17.18846 -16.73176 -16.38221 -15.91405 -15.84436 -15.56332 -15.44235 -15.32436 -14.60582 -14.31845 -14.29059 -13.94132 -13.84398 -13.45489 -13.26821 -13.18225 -13.00872 -12.72243 -12.45350 -12.36116 -12.16060 -11.96497 -11.61989 -11.60477 -11.42596 -11.19512 -11.12737 -10.89220 -10.80917 -10.58028 -10.45408 -10.27250 -10.05039 -9.99965 -9.68550 -9.51925 -9.44882 -9.15965 -9.06038 -8.75947 -8.46664 -6.84289 -5.74185 -2.99867 0.97495 1.14740 3.15919 3.44715 3.50265 3.52344 3.56037 3.69975 3.99308 4.18692 4.54458 4.61800 4.68786 4.83971 4.92235 4.96855 5.05954 5.07310 5.12886 5.15476 5.19408 5.22594 5.32160 5.44123 5.49445 5.52878 5.60703 5.61714 5.71073 5.77762 5.79297 5.79767 5.88127 5.98907 5.99685 6.04105 6.11367 6.15108 6.29911 6.36299 6.36887 6.51315 6.52106 6.59435 6.61961 6.93721 7.13919 7.29970 7.75161 7.89971 7.98249 8.45682 8.75611 9.57322 10.15011 10.51306 11.49053 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007124 B = 0.003484 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3929.222518 B = 8034.574512 C =11102.986120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.015 4.015 3 Si 0.904 3.096 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.283 1.283 7 C -0.228 4.228 8 H 0.068 0.932 9 N -0.724 5.724 10 C 0.142 3.858 11 C 0.175 3.825 12 N -0.717 5.717 13 C 0.526 3.474 14 O -0.533 6.533 15 C -0.141 4.141 16 C -0.091 4.091 17 C -0.072 4.072 18 C 0.138 3.862 19 C -0.171 4.171 20 C -0.075 4.075 21 C -0.185 4.185 22 C 0.101 3.899 23 N -0.479 5.479 24 C -0.155 4.155 25 C 0.062 3.938 26 O -0.387 6.387 27 C 0.067 3.933 28 C -0.163 4.163 29 H 0.253 0.747 30 H 0.381 0.619 31 H 0.050 0.950 32 H 0.018 0.982 33 H 0.394 0.606 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.135 0.865 41 H 0.132 0.868 42 H 0.132 0.868 43 H 0.154 0.846 44 H 0.089 0.911 45 H 0.085 0.915 46 H 0.093 0.907 47 H 0.046 0.954 48 H 0.088 0.912 49 H 0.047 0.953 50 H 0.075 0.925 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.426 -12.058 13.331 18.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.210 4.210 3 Si 0.735 3.265 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.209 1.209 7 C -0.359 4.359 8 H 0.086 0.914 9 N -0.368 5.368 10 C 0.014 3.986 11 C 0.089 3.911 12 N -0.369 5.369 13 C 0.312 3.688 14 O -0.410 6.410 15 C -0.181 4.181 16 C -0.129 4.129 17 C -0.109 4.109 18 C 0.000 4.000 19 C -0.191 4.191 20 C -0.101 4.101 21 C -0.204 4.204 22 C -0.056 4.056 23 N -0.188 5.188 24 C -0.193 4.193 25 C -0.015 4.015 26 O -0.305 6.305 27 C -0.010 4.010 28 C -0.202 4.202 29 H 0.062 0.938 30 H 0.215 0.785 31 H 0.068 0.932 32 H 0.036 0.964 33 H 0.227 0.773 34 H 0.103 0.897 35 H 0.114 0.886 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.153 0.847 41 H 0.150 0.850 42 H 0.150 0.850 43 H 0.171 0.829 44 H 0.108 0.892 45 H 0.103 0.897 46 H 0.111 0.889 47 H 0.065 0.935 48 H 0.106 0.894 49 H 0.065 0.935 50 H 0.094 0.906 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.394 -12.900 12.776 18.313 hybrid contribution -0.263 2.262 0.702 2.383 sum -2.657 -10.638 13.478 17.375 Atomic orbital electron populations 1.69642 1.04972 1.25354 1.58705 1.24645 0.95496 0.97393 1.03502 0.86225 0.78736 0.84045 0.77465 1.21843 1.21887 1.20881 1.19237 0.91025 0.84201 1.41485 0.91443 1.42192 1.05549 0.99684 1.89373 1.21072 0.93589 0.85031 0.98938 1.20526 0.91329 0.95135 0.84085 1.45959 1.09549 1.74496 1.06891 1.20377 0.88777 0.75608 0.84000 1.90623 1.15204 1.49905 1.85233 1.21674 0.99063 1.03691 0.93680 1.21184 0.97249 1.03873 0.90639 1.20624 0.96534 1.03001 0.90789 1.21327 0.93792 0.89359 0.95489 1.22059 1.01362 0.99275 0.96407 1.21587 0.94081 0.98421 0.95985 1.22115 1.01114 0.95313 1.01908 1.22761 0.95596 0.97132 0.90109 1.67492 1.05436 1.29951 1.15938 1.22471 0.99528 0.99318 0.97987 1.22622 0.92789 0.84769 1.01347 1.87889 1.59491 1.39154 1.44006 1.22500 0.92508 0.98628 0.87351 1.22549 0.98978 0.94131 1.04541 0.93761 0.78491 0.93234 0.96412 0.77264 0.89660 0.88579 0.91133 0.90321 0.90007 0.90076 0.84693 0.84973 0.85026 0.82881 0.89231 0.89685 0.88907 0.93547 0.89382 0.93459 0.90626 0.88775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -27.74 13.06 55.49 0.72 -27.01 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 3 Si 0.90 22.77 29.55 -169.99 -5.02 17.75 16 4 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 5 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 6 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.23 -6.49 9.99 -15.06 -0.15 -6.64 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.72 -18.13 5.21 -59.91 -0.31 -18.44 16 10 C 0.14 3.03 4.79 -4.05 -0.02 3.01 16 11 C 0.18 2.87 0.32 -131.64 -0.04 2.83 16 12 N -0.72 -10.93 3.75 -47.44 -0.18 -11.11 16 13 C 0.53 8.77 7.24 -10.99 -0.08 8.69 16 14 O -0.53 -10.74 12.29 5.56 0.07 -10.67 16 15 C -0.14 -1.85 5.70 -27.88 -0.16 -2.01 16 16 C -0.09 -1.26 4.36 -26.73 -0.12 -1.38 16 17 C -0.07 -0.80 5.61 -27.88 -0.16 -0.95 16 18 C 0.14 1.69 6.18 -82.58 -0.51 1.18 16 19 C -0.17 -1.81 9.71 -39.44 -0.38 -2.19 16 20 C -0.07 -0.69 10.18 -39.28 -0.40 -1.09 16 21 C -0.18 -1.66 10.11 -39.44 -0.40 -2.06 16 22 C 0.10 1.07 11.18 -17.55 -0.20 0.88 16 23 N -0.48 -6.26 9.88 -9.47 -0.09 -6.35 16 24 C -0.15 -2.29 4.84 -26.50 -0.13 -2.42 16 25 C 0.06 0.76 6.67 37.30 0.25 1.01 16 26 O -0.39 -5.33 10.77 -35.23 -0.38 -5.71 16 27 C 0.07 0.87 6.68 37.21 0.25 1.11 16 28 C -0.16 -2.44 4.82 -26.60 -0.13 -2.57 16 29 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 30 H 0.38 9.70 6.51 -40.82 -0.27 9.43 16 31 H 0.05 1.18 6.25 -51.93 -0.32 0.86 16 32 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.39 5.09 7.41 -40.82 -0.30 4.79 16 34 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.07 1.18 8.10 -51.93 -0.42 0.76 16 37 H 0.08 1.19 7.90 -51.93 -0.41 0.78 16 38 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.08 0.80 7.87 -51.93 -0.41 0.39 16 40 H 0.14 1.18 7.95 -52.49 -0.42 0.76 16 41 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 42 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 43 H 0.15 1.22 8.06 -52.49 -0.42 0.79 16 44 H 0.09 1.45 7.22 -51.93 -0.37 1.08 16 45 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 46 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.05 0.51 7.01 -51.93 -0.36 0.15 16 48 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 49 H 0.05 0.59 7.75 -51.93 -0.40 0.19 16 50 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 51 H 0.09 1.56 6.26 -51.93 -0.32 1.24 16 LS Contribution 405.40 15.07 6.11 6.11 Total: -1.00 -34.45 405.40 -9.76 -44.22 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: -8.21 Total: 14.36 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: -2.47 Total: -3.14 kcal Atomic # 7 Polarization: -63.05 SS G_CDS: 0.14 Total: -62.91 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: -0.31 Total: -16.38 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.45 -9.76 -44.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274014089.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.700 kcal (2) G-P(sol) polarization free energy of solvation -34.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds