Wall clock time and date at job start Wed Apr 1 2020 04:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 120.00172 * 2 1 4 4 H 1.48506 * 109.47391 * 270.00463 * 3 2 1 5 5 H 1.48496 * 109.47222 * 30.00252 * 3 2 1 6 6 H 1.48503 * 109.47370 * 150.00590 * 3 2 1 7 7 C 1.38812 * 119.99971 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99902 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99960 * 359.97438 * 7 2 1 10 10 C 1.46491 * 120.00088 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47558 * 175.02252 * 10 9 7 12 12 N 1.46505 * 109.54023 * 305.58590 * 11 10 9 13 13 C 1.34775 * 119.99838 * 304.08811 * 12 11 10 14 14 O 1.21281 * 119.99831 * 354.69574 * 13 12 11 15 15 C 1.50702 * 119.99750 * 174.70103 * 13 12 11 16 16 C 1.53003 * 109.46706 * 179.97438 * 15 13 12 17 17 C 1.53006 * 109.46826 * 179.97438 * 16 15 13 18 18 C 1.50700 * 109.46815 * 179.97438 * 17 16 15 19 19 C 1.38235 * 119.61480 * 125.02401 * 18 17 16 20 20 C 1.38632 * 119.15718 * 179.74422 * 19 18 17 21 21 C 1.38673 * 118.41896 * 0.47411 * 20 19 18 22 22 C 1.38183 * 119.16471 * 359.49961 * 21 20 19 23 23 N 1.31854 * 119.61830 * 304.99685 * 18 17 16 24 24 C 1.53179 * 109.54288 * 65.75740 * 11 10 9 25 25 C 1.53277 * 109.06530 * 176.85780 * 24 11 10 26 26 O 1.42901 * 109.46012 * 302.44594 * 25 24 11 27 27 C 1.42900 * 114.09860 * 61.15808 * 26 25 24 28 28 C 1.53093 * 109.41539 * 298.84424 * 27 26 25 29 29 H 0.97008 * 120.00069 * 359.97438 * 1 2 3 30 30 H 0.97001 * 119.99745 * 359.97438 * 9 7 2 31 31 H 1.09001 * 109.47248 * 55.01898 * 10 9 7 32 32 H 1.09001 * 109.47314 * 295.02702 * 10 9 7 33 33 H 0.97000 * 119.99753 * 124.08835 * 12 11 10 34 34 H 1.09001 * 109.47389 * 60.00008 * 15 13 12 35 35 H 1.09001 * 109.46842 * 299.99368 * 15 13 12 36 36 H 1.09001 * 109.47101 * 59.99941 * 16 15 13 37 37 H 1.09001 * 109.47043 * 299.99354 * 16 15 13 38 38 H 1.08998 * 109.47473 * 59.99643 * 17 16 15 39 39 H 1.09001 * 109.46844 * 299.99551 * 17 16 15 40 40 H 1.07996 * 120.42044 * 359.94871 * 19 18 17 41 41 H 1.07998 * 120.78806 * 180.22614 * 20 19 18 42 42 H 1.08002 * 120.41569 * 179.78469 * 21 20 19 43 43 H 1.07999 * 119.61541 * 180.25785 * 22 21 20 44 44 H 1.09002 * 109.52026 * 296.84834 * 24 11 10 45 45 H 1.09000 * 109.51965 * 57.02892 * 24 11 10 46 46 H 1.09001 * 109.45722 * 182.45481 * 25 24 11 47 47 H 1.08990 * 109.46919 * 62.44912 * 25 24 11 48 48 H 1.09004 * 109.48513 * 178.86137 * 27 26 25 49 49 H 1.08995 * 109.49147 * 58.83208 * 27 26 25 50 50 H 1.09004 * 109.52439 * 297.70120 * 28 27 26 51 51 H 1.09000 * 109.57719 * 177.54763 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4401 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 6 1.0685 -4.8170 0.1246 12 7 0.2261 -4.6173 1.3065 13 6 0.7930 -4.4543 2.5183 14 8 1.9936 -4.5686 2.6464 15 6 -0.0649 -4.1302 3.7141 16 6 0.8195 -3.9988 4.9557 17 6 -0.0515 -3.6692 6.1697 18 6 0.8196 -3.5404 7.3927 19 6 0.7688 -2.3843 8.1488 20 6 1.5702 -2.2781 9.2750 21 6 2.4038 -3.3394 9.5943 22 6 2.4002 -4.4638 8.7911 23 7 1.6208 -4.5319 7.7294 24 6 0.1883 -4.8772 -1.1276 25 6 -0.7445 -6.0892 -1.0262 26 8 0.0340 -7.2774 -0.8708 27 6 0.8416 -7.2958 0.3080 28 6 1.8379 -6.1344 0.2604 29 1 -0.4851 0.8401 0.0004 30 1 0.3555 -2.3880 0.0002 31 1 2.7498 -3.6769 0.8415 32 1 2.6161 -3.7541 -0.9317 33 1 -0.7396 -4.6024 1.2169 34 1 -0.7904 -4.9291 3.8681 35 1 -0.5900 -3.1909 3.5406 36 1 1.5452 -3.2002 4.8020 37 1 1.3443 -4.9384 5.1290 38 1 -0.7775 -4.4674 6.3235 39 1 -0.5759 -2.7295 5.9961 40 1 0.1107 -1.5755 7.8677 41 1 1.5489 -1.3884 9.8868 42 1 3.0442 -3.2896 10.4625 43 1 3.0434 -5.2962 9.0354 44 1 -0.4033 -3.9646 -1.2011 45 1 0.8186 -4.9759 -2.0114 46 1 -1.3435 -6.1633 -1.9338 47 1 -1.4022 -5.9703 -0.1652 48 1 1.3852 -8.2391 0.3616 49 1 0.2049 -7.1928 1.1867 50 1 2.5015 -6.2585 -0.5954 51 1 2.4260 -6.1199 1.1781 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274014089.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:23 Heat of formation + Delta-G solvation = -69.955655 kcal Electronic energy + Delta-G solvation = -31237.569322 eV Core-core repulsion = 27135.689037 eV Total energy + Delta-G solvation = -4101.880285 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.71421 -41.07707 -39.56454 -37.29395 -35.90379 -35.41633 -33.41853 -33.22501 -32.47116 -32.05402 -31.86094 -28.51677 -28.01993 -25.44759 -24.79132 -24.51080 -24.08090 -23.02776 -22.22771 -21.37135 -20.28053 -19.26310 -18.33655 -17.61759 -17.28478 -17.06641 -16.99267 -16.83732 -16.57232 -16.33555 -16.26413 -15.68128 -15.39012 -15.25659 -15.09859 -14.86837 -14.74618 -14.25525 -14.08701 -13.98758 -13.85968 -13.63721 -13.29407 -13.07591 -12.97462 -12.84552 -12.79729 -12.71845 -12.53630 -12.30326 -12.18949 -12.12960 -11.96565 -11.67735 -11.63344 -11.35134 -11.01220 -10.78502 -10.63221 -10.42479 -10.28989 -9.85978 -9.83144 -8.95619 -7.96356 -5.22073 0.19927 0.39305 1.43497 1.43951 1.52655 1.83385 2.32703 2.53906 2.88014 2.97218 3.36278 3.41326 3.58570 3.73353 3.78828 3.88457 3.90288 4.01951 4.04200 4.12562 4.20235 4.25230 4.27464 4.28724 4.31082 4.46250 4.54445 4.65409 4.67798 4.73911 4.76053 4.80804 4.81233 4.85117 4.87147 4.87254 4.96829 5.09977 5.12163 5.16001 5.17433 5.23074 5.29423 5.34081 5.41679 5.45732 5.71909 5.84109 6.25766 6.26570 6.72979 7.10203 7.34394 7.46648 8.07056 8.37894 9.26220 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007124 B = 0.003484 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3929.222518 B = 8034.574512 C =11102.986120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.062 4.062 3 Si 0.964 3.036 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.282 1.282 7 C -0.246 4.246 8 H 0.057 0.943 9 N -0.725 5.725 10 C 0.144 3.856 11 C 0.181 3.819 12 N -0.708 5.708 13 C 0.515 3.485 14 O -0.574 6.574 15 C -0.132 4.132 16 C -0.080 4.080 17 C -0.064 4.064 18 C 0.110 3.890 19 C -0.183 4.183 20 C -0.079 4.079 21 C -0.180 4.180 22 C 0.082 3.918 23 N -0.513 5.513 24 C -0.148 4.148 25 C 0.066 3.934 26 O -0.393 6.393 27 C 0.073 3.927 28 C -0.157 4.157 29 H 0.252 0.748 30 H 0.379 0.621 31 H 0.020 0.980 32 H 0.012 0.988 33 H 0.408 0.592 34 H 0.126 0.874 35 H 0.099 0.901 36 H 0.030 0.970 37 H 0.060 0.940 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.150 0.850 41 H 0.161 0.839 42 H 0.162 0.838 43 H 0.172 0.828 44 H 0.075 0.925 45 H 0.078 0.922 46 H 0.114 0.886 47 H 0.065 0.935 48 H 0.107 0.893 49 H 0.055 0.945 50 H 0.074 0.926 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.813 -12.371 14.261 19.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.609 5.609 2 C -0.255 4.255 3 Si 0.793 3.207 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.207 1.207 7 C -0.378 4.378 8 H 0.075 0.925 9 N -0.368 5.368 10 C 0.017 3.983 11 C 0.094 3.906 12 N -0.360 5.360 13 C 0.303 3.697 14 O -0.454 6.454 15 C -0.172 4.172 16 C -0.118 4.118 17 C -0.102 4.102 18 C -0.027 4.027 19 C -0.202 4.202 20 C -0.105 4.105 21 C -0.200 4.200 22 C -0.075 4.075 23 N -0.223 5.223 24 C -0.186 4.186 25 C -0.011 4.011 26 O -0.311 6.311 27 C -0.003 4.003 28 C -0.196 4.196 29 H 0.061 0.939 30 H 0.213 0.787 31 H 0.038 0.962 32 H 0.029 0.971 33 H 0.244 0.756 34 H 0.144 0.856 35 H 0.117 0.883 36 H 0.049 0.951 37 H 0.079 0.921 38 H 0.117 0.883 39 H 0.112 0.888 40 H 0.168 0.832 41 H 0.179 0.821 42 H 0.180 0.820 43 H 0.189 0.811 44 H 0.094 0.906 45 H 0.097 0.903 46 H 0.132 0.868 47 H 0.083 0.917 48 H 0.125 0.875 49 H 0.074 0.926 50 H 0.093 0.907 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.803 -13.233 13.695 19.420 hybrid contribution 0.271 2.367 0.439 2.423 sum -3.533 -10.866 14.134 18.175 Atomic orbital electron populations 1.69755 1.05924 1.25925 1.59279 1.25323 0.96413 1.00146 1.03596 0.85292 0.77580 0.80298 0.77489 1.21243 1.21514 1.20733 1.19474 0.90927 0.85823 1.41557 0.92455 1.42195 1.05422 1.00066 1.89126 1.21077 0.94363 0.85720 0.97175 1.20357 0.91019 0.93666 0.85511 1.45881 1.10184 1.73796 1.06173 1.21092 0.88700 0.74774 0.85132 1.90613 1.17180 1.51680 1.85916 1.21689 0.98868 1.05140 0.91503 1.21003 0.97002 1.01377 0.92435 1.20585 0.96187 1.04215 0.89192 1.21545 0.94587 0.90168 0.96375 1.22322 1.01971 0.99098 0.96837 1.22008 0.93330 0.99466 0.95717 1.22475 1.00856 0.94423 1.02237 1.23210 0.95725 0.98611 0.89979 1.67449 1.06541 1.30986 1.17311 1.22395 0.99418 1.00243 0.96568 1.22711 0.92130 0.82908 1.03327 1.87897 1.59578 1.39437 1.44235 1.22506 0.92081 0.98213 0.87526 1.22467 0.99316 0.94302 1.03496 0.93891 0.78744 0.96156 0.97055 0.75611 0.85621 0.88308 0.95114 0.92125 0.88348 0.88770 0.83236 0.82149 0.81992 0.81113 0.90628 0.90338 0.86781 0.91662 0.87545 0.92643 0.90737 0.90692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.83 13.06 21.65 0.28 -56.55 16 2 C -0.06 -3.57 5.50 84.86 0.47 -3.10 16 3 Si 0.96 47.07 29.55 68.60 2.03 49.09 16 4 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 5 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 6 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 7 C -0.25 -14.30 9.99 84.03 0.84 -13.46 16 8 H 0.06 3.38 7.83 -2.91 -0.02 3.36 16 9 N -0.72 -37.27 5.21 -343.47 -1.79 -39.06 16 10 C 0.14 6.41 4.79 86.38 0.41 6.82 16 11 C 0.18 5.98 0.32 3.72 0.00 5.98 16 12 N -0.71 -21.32 3.75 -422.39 -1.59 -22.90 16 13 C 0.51 17.42 7.24 87.66 0.63 18.06 16 14 O -0.57 -24.33 12.29 -3.03 -0.04 -24.36 16 15 C -0.13 -3.40 5.70 29.85 0.17 -3.23 16 16 C -0.08 -2.27 4.36 30.60 0.13 -2.14 16 17 C -0.06 -1.40 5.61 29.85 0.17 -1.24 16 18 C 0.11 2.70 6.18 42.55 0.26 2.97 16 19 C -0.18 -3.72 9.71 22.36 0.22 -3.50 16 20 C -0.08 -1.33 10.18 22.47 0.23 -1.10 16 21 C -0.18 -2.96 10.11 22.36 0.23 -2.73 16 22 C 0.08 1.70 11.18 84.67 0.95 2.64 16 23 N -0.51 -13.62 9.88 -183.88 -1.82 -15.44 16 24 C -0.15 -4.27 4.84 30.75 0.15 -4.12 16 25 C 0.07 1.46 6.67 72.07 0.48 1.94 16 26 O -0.39 -9.80 10.77 -148.98 -1.60 -11.41 16 27 C 0.07 1.76 6.68 72.01 0.48 2.24 16 28 C -0.16 -4.69 4.82 30.68 0.15 -4.54 16 29 H 0.25 14.48 8.31 -92.70 -0.77 13.70 16 30 H 0.38 19.60 6.51 -92.71 -0.60 19.00 16 31 H 0.02 1.03 6.25 -2.39 -0.01 1.02 16 32 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.41 9.91 7.41 -92.71 -0.69 9.22 16 34 H 0.13 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 36 H 0.03 1.09 8.10 -2.39 -0.02 1.07 16 37 H 0.06 1.93 7.90 -2.39 -0.02 1.91 16 38 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.09 1.77 7.87 -2.39 -0.02 1.75 16 40 H 0.15 2.44 7.95 -2.91 -0.02 2.41 16 41 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 42 H 0.16 1.56 8.06 -2.91 -0.02 1.54 16 43 H 0.17 2.64 8.06 -2.91 -0.02 2.62 16 44 H 0.08 2.42 7.22 -2.39 -0.02 2.40 16 45 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 46 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 47 H 0.07 1.23 7.01 -2.39 -0.02 1.21 16 48 H 0.11 2.19 8.14 -2.38 -0.02 2.17 16 49 H 0.06 1.26 7.75 -2.39 -0.02 1.24 16 50 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 51 H 0.07 2.57 6.26 -2.39 -0.01 2.56 16 Total: -1.00 -76.75 405.40 1.09 -75.66 By element: Atomic # 1 Polarization: 43.83 SS G_CDS: -0.35 Total: 43.48 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: 5.97 Total: 1.48 kcal Atomic # 7 Polarization: -129.04 SS G_CDS: -4.91 Total: -133.94 kcal Atomic # 8 Polarization: -34.13 SS G_CDS: -1.64 Total: -35.77 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.03 Total: 49.09 kcal Total: -76.75 1.09 -75.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274014089.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.705 kcal (2) G-P(sol) polarization free energy of solvation -76.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds